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Items: 1 to 50 of 90

1.

Predicting tumor cell line response to drug pairs with deep learning.

Xia F, Shukla M, Brettin T, Garcia-Cardona C, Cohn J, Allen JE, Maslov S, Holbeck SL, Doroshow JH, Evrard YA, Stahlberg EA, Stevens RL.

BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):486. doi: 10.1186/s12859-018-2509-3.

2.

Onset of natural selection in populations of autocatalytic heteropolymers.

Tkachenko AV, Maslov S.

J Chem Phys. 2018 Oct 7;149(13):134901. doi: 10.1063/1.5048488.

PMID:
30292218
3.

Multiple stable states in microbial communities explained by the stable marriage problem.

Goyal A, Dubinkina V, Maslov S.

ISME J. 2018 Dec;12(12):2823-2834. doi: 10.1038/s41396-018-0222-x. Epub 2018 Jul 19.

PMID:
30022156
4.

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D.

Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. No abstract available.

5.

Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems.

Goyal A, Maslov S.

Phys Rev Lett. 2018 Apr 13;120(15):158102. doi: 10.1103/PhysRevLett.120.158102.

PMID:
29756882
6.

Severe population collapses and species extinctions in multihost epidemic dynamics.

Maslov S, Sneppen K.

Phys Rev E. 2017 Aug;96(2-1):022412. doi: 10.1103/PhysRevE.96.022412. Epub 2017 Aug 22.

PMID:
28950542
7.

Recombination-Driven Genome Evolution and Stability of Bacterial Species.

Dixit PD, Pang TY, Maslov S.

Genetics. 2017 Sep;207(1):281-295. doi: 10.1534/genetics.117.300061. Epub 2017 Jul 27.

8.

Family-specific scaling laws in bacterial genomes.

De Lazzari E, Grilli J, Maslov S, Cosentino Lagomarsino M.

Nucleic Acids Res. 2017 Jul 27;45(13):7615-7622. doi: 10.1093/nar/gkx510.

9.

Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems.

Maslov S, Sneppen K.

Sci Rep. 2017 Jan 4;7:39642. doi: 10.1038/srep39642.

10.

Pan- and core- network analysis of co-expression genes in a model plant.

He F, Maslov S.

Sci Rep. 2016 Dec 16;6:38956. doi: 10.1038/srep38956.

11.

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks.

Wang D, He F, Maslov S, Gerstein M.

PLoS Comput Biol. 2016 Oct 19;12(10):e1005146. doi: 10.1371/journal.pcbi.1005146. eCollection 2016 Oct.

12.

Large-Scale Public Transcriptomic Data Mining Reveals a Tight Connection between the Transport of Nitrogen and Other Transport Processes in Arabidopsis.

He F, Karve AA, Maslov S, Babst BA.

Front Plant Sci. 2016 Aug 11;7:1207. doi: 10.3389/fpls.2016.01207. eCollection 2016.

13.

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

He F, Yoo S, Wang D, Kumari S, Gerstein M, Ware D, Maslov S.

Plant J. 2016 Jun;86(6):472-80. doi: 10.1111/tpj.13175.

14.

[The forensic chemical investigation of acetylsalicylic acid].

Shormanov VK, Chupak VV, Pobedonstseva MN, Maslov SV, Kibets NA, Tikhopoeva NN.

Sud Med Ekspert. 2015 Nov-Dec;58(6):37-43. doi: 10.17116/sudmed201558637-43. Russian.

PMID:
26856059
15.

Diversity Waves in Collapse-Driven Population Dynamics.

Maslov S, Sneppen K.

PLoS Comput Biol. 2015 Sep 14;11(9):e1004440. doi: 10.1371/journal.pcbi.1004440. eCollection 2015 Sep.

16.

Spontaneous emergence of autocatalytic information-coding polymers.

Tkachenko AV, Maslov S.

J Chem Phys. 2015 Jul 28;143(4):045102. doi: 10.1063/1.4922545.

PMID:
26233165
17.

Recombinant transfer in the basic genome of Escherichia coli.

Dixit PD, Pang TY, Studier FW, Maslov S.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):9070-5. doi: 10.1073/pnas.1510839112. Epub 2015 Jul 7.

18.

Well-temperate phage: optimal bet-hedging against local environmental collapses.

Maslov S, Sneppen K.

Sci Rep. 2015 Jun 2;5:10523. doi: 10.1038/srep10523.

19.

Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638.

Taghavi S, Wu X, Ouyang L, Zhang YB, Stadler A, McCorkle S, Zhu W, Maslov S, van der Lelie D.

PLoS One. 2015 Jan 21;10(1):e0115455. doi: 10.1371/journal.pone.0115455. eCollection 2015.

20.

[Determination of carbofuran in the biological material for the purpose of forensic medical examination].

Shormanov VK, Kovalenko EA, Duritsyn EP, Maslov SV, Galushkin SG, Pronichenko EI.

Sud Med Ekspert. 2013 Jul-Aug;56(4):30-4. Russian.

PMID:
24428054
21.

Evolutionary capacitance and control of protein stability in protein-protein interaction networks.

Dixit PD, Maslov S.

PLoS Comput Biol. 2013 Apr;9(4):e1003023. doi: 10.1371/journal.pcbi.1003023. Epub 2013 Apr 4.

22.

Universal distribution of component frequencies in biological and technological systems.

Pang TY, Maslov S.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6235-9. doi: 10.1073/pnas.1217795110. Epub 2013 Mar 25.

23.

[The detection of beta-cypermethrin during forensic chemical expertise of biological materials].

Shormanov VK, Chigareva EN, Maslov SV, Pronichenko EI, Goniev SV.

Sud Med Ekspert. 2011 Sep-Oct;54(5):37-40. Russian.

PMID:
22117478
24.

Joint scaling laws in functional and evolutionary categories in prokaryotic genomes.

Grilli J, Bassetti B, Maslov S, Cosentino Lagomarsino M.

Nucleic Acids Res. 2012 Jan;40(2):530-40. doi: 10.1093/nar/gkr711. Epub 2011 Sep 21.

25.

A toolbox model of evolution of metabolic pathways on networks of arbitrary topology.

Pang TY, Maslov S.

PLoS Comput Biol. 2011 May;7(5):e1001137. doi: 10.1371/journal.pcbi.1001137. Epub 2011 May 19.

26.

[Detection of bancol for the purpose of forensic chemical expertise].

Shormanov VK, Baranov IuN, Duritsyn EP, Maslov SV, Pronichenko EI, Ganiev SV.

Sud Med Ekspert. 2010 Nov-Dec;53(6):39-41. Russian.

PMID:
21404533
27.

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions.

Heo M, Maslov S, Shakhnovich E.

Proc Natl Acad Sci U S A. 2011 Mar 8;108(10):4258-63. doi: 10.1073/pnas.1009392108. Epub 2011 Feb 22.

28.

Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes.

Studier FW, Daegelen P, Lenski RE, Maslov S, Kim JF.

J Mol Biol. 2009 Dec 11;394(4):653-80. doi: 10.1016/j.jmb.2009.09.021. Epub 2009 Sep 15.

PMID:
19765592
29.

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

Maslov S, Krishna S, Pang TY, Sneppen K.

Proc Natl Acad Sci U S A. 2009 Jun 16;106(24):9743-8. doi: 10.1073/pnas.0903206106. Epub 2009 May 29.

30.

Fluctuations in mass-action equilibrium of protein binding networks.

Yan KK, Walker D, Maslov S.

Phys Rev Lett. 2008 Dec 31;101(26):268102.

PMID:
19437675
31.

[Choice of a method of temporary drainage of the upper urinary tract in plastic reconstruction surgery on the vesicoureteral segment in children].

Pavlov AIu, Salikhar ShI, Poliakov NV, Maslov SA.

Urologiia. 2008 Nov-Dec;(6):66-70. Russian.

PMID:
19248601
32.

Promise and pitfalls of extending Google's PageRank algorithm to citation networks.

Maslov S, Redner S.

J Neurosci. 2008 Oct 29;28(44):11103-5. doi: 10.1523/JNEUROSCI.0002-08.2008. Review. No abstract available.

33.

Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks.

Ispolatov I, Maslov S.

BMC Bioinformatics. 2008 Oct 8;9:424. doi: 10.1186/1471-2105-9-424.

34.

Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size.

Zhang J, Maslov S, Shakhnovich EI.

Mol Syst Biol. 2008;4:210. doi: 10.1038/msb.2008.48. Epub 2008 Aug 5.

35.

Spreading out of perturbations in reversible reaction networks.

Maslov S, Sneppen K, Ispolatov I.

New J Phys. 2007 Aug 17;9:273.

36.
37.

[Transurethral ureteropyeloscopy with lithotripsy and lithoextraction in children].

Martov AG, Lisenok AA, Pavlov AIu, Maslov SA, Ergakov DV, Serebrianyń≠ SA.

Urologiia. 2007 May-Jun;(3):71-5. Russian.

PMID:
17724831
38.

Propagation of large concentration changes in reversible protein-binding networks.

Maslov S, Ispolatov I.

Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13655-60. Epub 2007 Aug 15.

39.

[Endoscopic treatment of bilateral vesicoureteral reflux in children].

Pavlov AIu, Martov AG, Maslov SA, Lisenok AA, Poliakov NV.

Urologiia. 2007 Mar-Apr;(2):63-8. Russian.

PMID:
17578201
40.

UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model.

Krishna S, Maslov S, Sneppen K.

PLoS Comput Biol. 2007 Mar 16;3(3):e41. Epub 2007 Jan 16.

41.

Prediction of protein-protein interactions on the basis of evolutionary conservation of protein functions.

Kotelnikova E, Kalinin A, Yuryev A, Maslov S.

Evol Bioinform Online. 2007 Aug 8;3:197-206.

42.

Automatic pathway building in biological association networks.

Yuryev A, Mulyukov Z, Kotelnikova E, Maslov S, Egorov S, Nikitin A, Daraselia N, Mazo I.

BMC Bioinformatics. 2006 Mar 24;7:171.

43.

[Roentgenoendoscopic therapy of ureteral injuries after obstetric-gynecological surgery].

Martov AG, Maslov SA, Saliukov RV, Lisenok AA.

Urologiia. 2006 Jan-Feb;(1):11-5. Russian.

PMID:
16550815
44.

Computational architecture of the yeast regulatory network.

Maslov S, Sneppen K.

Phys Biol. 2005 Nov 9;2(4):S94-100.

PMID:
16280626
45.

[Forensic chemical detection of furadan].

Shormanov VK, Ivanov VP, Korolev VA, Maslov SV, Zhukov DA, Olimpiev IB, Oleń≠nik SM.

Sud Med Ekspert. 2005 May-Jun;48(3):27-31. Russian.

PMID:
16078546
46.

Binding properties and evolution of homodimers in protein-protein interaction networks.

Ispolatov I, Yuryev A, Mazo I, Maslov S.

Nucleic Acids Res. 2005 Jun 27;33(11):3629-35. Print 2005.

47.

[Echocardiography--prognosis of the course of infectious endocarditis and long-term survival in this disease].

Maslov SV, Lobanov MIu, Kovalev IuR.

Ter Arkh. 2004;76(12):44-8. Russian.

PMID:
15724925
48.

Detection of topological patterns in protein networks.

Maslov S, Sneppen K.

Genet Eng (N Y). 2004;26:33-47. Review. No abstract available.

PMID:
15387292
49.

Hierarchy measures in complex networks.

Trusina A, Maslov S, Minnhagen P, Sneppen K.

Phys Rev Lett. 2004 Apr 30;92(17):178702. Epub 2004 Apr 29.

PMID:
15169201
50.

[Survival of patients with infectious endocarditis in various treatment methods].

Khubulava GG, Maslov SV, Ktsoeva TV, Kovalev IuR.

Klin Med (Mosk). 2004;82(3):58-62. Russian.

PMID:
15114778

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