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Items: 1 to 50 of 117

1.

Erratum: Publisher Correction: A TonB-dependent receptor constitutes the outer membrane transport system for a lignin-derived aromatic compound.

Fujita M, Mori K, Hara H, Hishiyama S, Kamimura N, Masai E.

Commun Biol. 2019 Dec 17;2:476. doi: 10.1038/s42003-019-0724-8. eCollection 2019.

2.

A TonB-dependent receptor constitutes the outer membrane transport system for a lignin-derived aromatic compound.

Fujita M, Mori K, Hara H, Hishiyama S, Kamimura N, Masai E.

Commun Biol. 2019 Nov 22;2:432. doi: 10.1038/s42003-019-0676-z. eCollection 2019. Erratum in: Commun Biol. 2019 Dec 17;2:476.

3.

Regulation of vanillate and syringate catabolism by a MarR-type transcriptional regulator DesR in Sphingobium sp. SYK-6.

Araki T, Umeda S, Kamimura N, Kasai D, Kumano S, Abe T, Kawazu C, Otsuka Y, Nakamura M, Katayama Y, Fukuda M, Masai E.

Sci Rep. 2019 Dec 2;9(1):18036. doi: 10.1038/s41598-019-54490-7.

4.

Discovery of novel enzyme genes involved in the conversion of an arylglycerol-β-aryl ether metabolite and their use in generating a metabolic pathway for lignin valorization.

Higuchi Y, Kato R, Tsubota K, Kamimura N, Westwood NJ, Masai E.

Metab Eng. 2019 Sep;55:258-267. doi: 10.1016/j.ymben.2019.08.002. Epub 2019 Aug 4.

PMID:
31390538
5.

Isolation of a novel platform bacterium for lignin valorization and its application in glucose-free cis,cis-muconate production.

Shinoda E, Takahashi K, Abe N, Kamimura N, Sonoki T, Masai E.

J Ind Microbiol Biotechnol. 2019 Aug;46(8):1071-1080. doi: 10.1007/s10295-019-02190-6. Epub 2019 May 27.

PMID:
31134414
6.

Advances in microbial lignin degradation and its applications.

Kamimura N, Sakamoto S, Mitsuda N, Masai E, Kajita S.

Curr Opin Biotechnol. 2019 Apr;56:179-186. doi: 10.1016/j.copbio.2018.11.011. Epub 2018 Dec 11. Review.

PMID:
30530243
7.

DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5'-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6.

Mori K, Niinuma K, Fujita M, Kamimura N, Masai E.

Appl Environ Microbiol. 2018 Oct 1;84(20). pii: e01314-18. doi: 10.1128/AEM.01314-18. Print 2018 Oct 15.

8.

Utilization of Lignocellulosic Biomass via Novel Sustainable Process.

Shikinaka K, Otsuka Y, Nakamura M, Masai E, Katayama Y.

J Oleo Sci. 2018 Sep 1;67(9):1059-1070. doi: 10.5650/jos.ess18075. Epub 2018 Aug 14. Review.

9.

Identification of the protocatechuate transporter gene in Sphingobium sp. strain SYK-6 and effects of overexpression on production of a value-added metabolite.

Mori K, Kamimura N, Masai E.

Appl Microbiol Biotechnol. 2018 Jun;102(11):4807-4816. doi: 10.1007/s00253-018-8988-3. Epub 2018 Apr 19.

PMID:
29675799
10.

Two novel decarboxylase genes play a key role in the stereospecific catabolism of dehydrodiconiferyl alcohol in Sphingobium sp. strain SYK-6.

Takahashi K, Miyake K, Hishiyama S, Kamimura N, Masai E.

Environ Microbiol. 2018 May;20(5):1739-1750. doi: 10.1111/1462-2920.14099. Epub 2018 Mar 26.

PMID:
29528542
11.

Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid.

Htet AN, Noguchi M, Ninomiya K, Tsuge Y, Kuroda K, Kajita S, Masai E, Katayama Y, Shikinaka K, Otsuka Y, Nakamura M, Honda R, Takahashi K.

J Biosci Bioeng. 2018 Jun;125(6):717-722. doi: 10.1016/j.jbiosc.2017.12.026. Epub 2018 Feb 1.

PMID:
29395960
12.

Bacterial Catabolism of β-Hydroxypropiovanillone and β-Hydroxypropiosyringone Produced in the Reductive Cleavage of Arylglycerol-β-Aryl Ether in Lignin.

Higuchi Y, Aoki S, Takenami H, Kamimura N, Takahashi K, Hishiyama S, Lancefield CS, Ojo OS, Katayama Y, Westwood NJ, Masai E.

Appl Environ Microbiol. 2018 Mar 19;84(7). pii: e02670-17. doi: 10.1128/AEM.02670-17. Print 2018 Apr 1.

13.

Bacterial catabolism of lignin-derived aromatics: New findings in a recent decade: Update on bacterial lignin catabolism.

Kamimura N, Takahashi K, Mori K, Araki T, Fujita M, Higuchi Y, Masai E.

Environ Microbiol Rep. 2017 Dec;9(6):679-705. doi: 10.1111/1758-2229.12597. Review.

PMID:
29052962
14.

Phthalates impact human health: Epidemiological evidences and plausible mechanism of action.

Benjamin S, Masai E, Kamimura N, Takahashi K, Anderson RC, Faisal PA.

J Hazard Mater. 2017 Oct 15;340:360-383. doi: 10.1016/j.jhazmat.2017.06.036. Epub 2017 Jun 19. Review.

PMID:
28800814
15.

The crystal structure of a new O-demethylase from Sphingobium sp. strain SYK-6.

Harada A, Kamimura N, Takeuchi K, Yu HY, Masai E, Senda T.

FEBS J. 2017 Jun;284(12):1855-1867. doi: 10.1111/febs.14085. Epub 2017 May 11.

16.

A bacterial aromatic aldehyde dehydrogenase critical for the efficient catabolism of syringaldehyde.

Kamimura N, Goto T, Takahashi K, Kasai D, Otsuka Y, Nakamura M, Katayama Y, Fukuda M, Masai E.

Sci Rep. 2017 Mar 15;7:44422. doi: 10.1038/srep44422.

17.

Identification of natural rubber degradation gene in Rhizobacter gummiphilus NS21.

Kasai D, Imai S, Asano S, Tabata M, Iijima S, Kamimura N, Masai E, Fukuda M.

Biosci Biotechnol Biochem. 2017 Mar;81(3):614-620. doi: 10.1080/09168451.2016.1263147. Epub 2017 Jan 23.

PMID:
28110615
18.

Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method.

Harada A, Sato Y, Kamimura N, Venugopalan N, Masai E, Senda T.

Acta Crystallogr F Struct Biol Commun. 2016 Dec 1;72(Pt 12):897-902. Epub 2016 Nov 30.

19.

Achromobacter denitrificans SP1 efficiently utilizes 16 phthalate diesters and their downstream products through protocatechuate 3,4-cleavage pathway.

Benjamin S, Kamimura N, Takahashi K, Masai E.

Ecotoxicol Environ Saf. 2016 Dec;134P1:172-178. doi: 10.1016/j.ecoenv.2016.08.028. Epub 2016 Sep 10.

PMID:
27619352
20.

Isolation and characterization of a bacterial strain that degrades cis-dichloroethenein the absence of aromatic inducers.

Yonezuka K, Araki N, Shimodaira J, Ohji S, Hosoyama A, Numata M, Yamazoe A, Kasai D, Masai E, Fujita N, Ezaki T, Fukuda M.

J Gen Appl Microbiol. 2016 Jul 14;62(3):118-25. doi: 10.2323/jgam.2015.12.002. Epub 2016 May 23.

21.

Beta-ketoadipic acid and muconolactone production from a lignin-related aromatic compound through the protocatechuate 3,4-metabolic pathway.

Okamura-Abe Y, Abe T, Nishimura K, Kawata Y, Sato-Izawa K, Otsuka Y, Nakamura M, Kajita S, Masai E, Sonoki T, Katayama Y.

J Biosci Bioeng. 2016 Jun;121(6):652-658. doi: 10.1016/j.jbiosc.2015.11.007. Epub 2015 Dec 23.

PMID:
26723258
22.

Expression and functional analyses of a putative phenylcoumaran benzylic ether reductase in Arabidopsis thaliana.

Nuoendagula, Kamimura N, Mori T, Nakabayashi R, Tsuji Y, Hishiyama S, Saito K, Masai E, Kajita S.

Plant Cell Rep. 2016 Mar;35(3):513-26. doi: 10.1007/s00299-015-1899-1. Epub 2015 Nov 25.

PMID:
26601823
23.

Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil.

Kato S, Chino K, Kamimura N, Masai E, Yumoto I, Kamagata Y.

Sci Rep. 2015 Sep 24;5:14295. doi: 10.1038/srep14295.

24.

Membrane-associated glucose-methanol-choline oxidoreductase family enzymes PhcC and PhcD are essential for enantioselective catabolism of dehydrodiconiferyl alcohol.

Takahashi K, Hirose Y, Kamimura N, Hishiyama S, Hara H, Araki T, Kasai D, Kajita S, Katayama Y, Fukuda M, Masai E.

Appl Environ Microbiol. 2015 Dec;81(23):8022-36. doi: 10.1128/AEM.02391-15. Epub 2015 Sep 11.

25.

γ-Resorcylate catabolic-pathway genes in the soil actinomycete Rhodococcus jostii RHA1.

Kasai D, Araki N, Motoi K, Yoshikawa S, Iino T, Imai S, Masai E, Fukuda M.

Appl Environ Microbiol. 2015 Nov;81(21):7656-65. doi: 10.1128/AEM.02422-15. Epub 2015 Aug 28.

26.

Draft Genome Sequence of Comamonas sp. Strain E6 (NBRC 107749), a Degrader of Phthalate Isomers through the Protocatechuate 4,5-Cleavage Pathway.

Shimodaira J, Kamimura N, Hosoyama A, Yamazoe A, Fujita N, Masai E.

Genome Announc. 2015 Jun 18;3(3). pii: e00643-15. doi: 10.1128/genomeA.00643-15.

27.

A monograph on the remediation of hazardous phthalates.

Benjamin S, Pradeep S, Josh MS, Kumar S, Masai E.

J Hazard Mater. 2015 Nov 15;298:58-72. doi: 10.1016/j.jhazmat.2015.05.004. Epub 2015 May 6. Review.

PMID:
26004054
28.

Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6.

Tsuji Y, Vanholme R, Tobimatsu Y, Ishikawa Y, Foster CE, Kamimura N, Hishiyama S, Hashimoto S, Shino A, Hara H, Sato-Izawa K, Oyarce P, Goeminne G, Morreel K, Kikuchi J, Takano T, Fukuda M, Katayama Y, Boerjan W, Ralph J, Masai E, Kajita S.

Plant Biotechnol J. 2015 Aug;13(6):821-32. doi: 10.1111/pbi.12316. Epub 2015 Jan 8.

29.

[Recent advances in Sphingobium sp. SYK-6 for lignin aromatic compounds degradation--a review].

Zhang X, Peng X, Masai E.

Wei Sheng Wu Xue Bao. 2014 Aug 4;54(8):854-67. Review. Chinese.

PMID:
25345016
30.

Three-Component O-Demethylase System Essential for Catabolism of a Lignin-Derived Biphenyl Compound in Sphingobium sp. Strain SYK-6.

Yoshikata T, Suzuki K, Kamimura N, Namiki M, Hishiyama S, Araki T, Kasai D, Otsuka Y, Nakamura M, Fukuda M, Katayama Y, Masai E.

Appl Environ Microbiol. 2014 Dec;80(23):7142-53. doi: 10.1128/AEM.02236-14. Epub 2014 Sep 12.

31.

Successful expression of a novel bacterial gene for pinoresinol reductase and its effect on lignan biosynthesis in transgenic Arabidopsis thaliana.

Tamura M, Tsuji Y, Kusunose T, Okazawa A, Kamimura N, Mori T, Nakabayashi R, Hishiyama S, Fukuhara Y, Hara H, Sato-Izawa K, Muranaka T, Saito K, Katayama Y, Fukuda M, Masai E, Kajita S.

Appl Microbiol Biotechnol. 2014 Oct;98(19):8165-77. doi: 10.1007/s00253-014-5934-x. Epub 2014 Jul 24.

PMID:
25056291
32.

Characterization of the catabolic pathway for a phenylcoumaran-type lignin-derived biaryl in Sphingobium sp. strain SYK-6.

Takahashi K, Kamimura N, Hishiyama S, Hara H, Kasai D, Katayama Y, Fukuda M, Kajita S, Masai E.

Biodegradation. 2014 Sep;25(5):735-45. doi: 10.1007/s10532-014-9695-0. Epub 2014 Jun 11.

PMID:
24916011
33.

Molecular mechanism of strict substrate specificity of an extradiol dioxygenase, DesB, derived from Sphingobium sp. SYK-6.

Sugimoto K, Senda M, Kasai D, Fukuda M, Masai E, Senda T.

PLoS One. 2014 Mar 21;9(3):e92249. doi: 10.1371/journal.pone.0092249. eCollection 2014.

34.

Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain E6.

Hosaka M, Kamimura N, Toribami S, Mori K, Kasai D, Fukuda M, Masai E.

Appl Environ Microbiol. 2013 Oct;79(19):6148-55. doi: 10.1128/AEM.01600-13. Epub 2013 Aug 2.

35.

Rhizobacter gummiphilus sp. nov., a rubber-degrading bacterium isolated from the soil of a botanical garden in Japan.

Imai S, Yoshida R, Endo Y, Fukunaga Y, Yamazoe A, Kasai D, Masai E, Fukuda M.

J Gen Appl Microbiol. 2013;59(3):199-205.

36.

Gene cluster and regulation system for 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene (DDE) degradation in Janibacter sp. TYM3221.

Nguyen PA, Trinh TH, Fukumitsu Y, Shimodaira J, Miyauchi K, Tokuda M, Kasai D, Masai E, Fukuda M.

J Biosci Bioeng. 2013 Jul;116(1):91-100. doi: 10.1016/j.jbiosc.2013.01.007. Epub 2013 Feb 13.

PMID:
23415487
37.

Characterization of nitrate and nitrite utilization system in Rhodococcus jostii RHA1.

Iino T, Miyauchi K, Kasai D, Masai E, Fukuda M.

J Biosci Bioeng. 2013 Jun;115(6):600-6. doi: 10.1016/j.jbiosc.2012.12.005. Epub 2013 Jan 5.

PMID:
23294576
38.

Discovery of pinoresinol reductase genes in sphingomonads.

Fukuhara Y, Kamimura N, Nakajima M, Hishiyama S, Hara H, Kasai D, Tsuji Y, Narita-Yamada S, Nakamura S, Katano Y, Fujita N, Katayama Y, Fukuda M, Kajita S, Masai E.

Enzyme Microb Technol. 2013 Jan 10;52(1):38-43. doi: 10.1016/j.enzmictec.2012.10.004. Epub 2012 Oct 13.

PMID:
23199737
39.

Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase ω class.

Meux E, Prosper P, Masai E, Mulliert G, Dumarçay S, Morel M, Didierjean C, Gelhaye E, Favier F.

FEBS Lett. 2012 Nov 16;586(22):3944-50. doi: 10.1016/j.febslet.2012.09.036. Epub 2012 Oct 8.

40.

Specific gene responses of Rhodococcus jostii RHA1 during growth in soil.

Iino T, Wang Y, Miyauchi K, Kasai D, Masai E, Fujii T, Ogawa N, Fukuda M.

Appl Environ Microbiol. 2012 Oct;78(19):6954-62. doi: 10.1128/AEM.00164-12. Epub 2012 Jul 27.

41.

Characterization of FerC, a MarR-type transcriptional regulator, involved in transcriptional regulation of the ferulate catabolic operon in Sphingobium sp. strain SYK-6.

Kasai D, Kamimura N, Tani K, Umeda S, Abe T, Fukuda M, Masai E.

FEMS Microbiol Lett. 2012 Jul;332(1):68-75. doi: 10.1111/j.1574-6968.2012.02576.x. Epub 2012 May 8.

42.

Regulation of the isophthalate catabolic operon controlled by IphR in Comamonas sp. strain E6.

Kamimura N, Inakazu K, Kasai D, Fukuda M, Masai E.

FEMS Microbiol Lett. 2012 Apr;329(2):186-92. doi: 10.1111/j.1574-6968.2012.02521.x. Epub 2012 Feb 23.

43.

Complete genome sequence of Sphingobium sp. strain SYK-6, a degrader of lignin-derived biaryls and monoaryls.

Masai E, Kamimura N, Kasai D, Oguchi A, Ankai A, Fukui S, Takahashi M, Yashiro I, Sasaki H, Harada T, Nakamura S, Katano Y, Narita-Yamada S, Nakazawa H, Hara H, Katayama Y, Fukuda M, Yamazaki S, Fujita N.

J Bacteriol. 2012 Jan;194(2):534-5. doi: 10.1128/JB.06254-11.

44.

Characterization of the third glutathione S-transferase gene involved in enantioselective cleavage of the β-aryl ether by Sphingobium sp. strain SYK-6.

Tanamura K, Abe T, Kamimura N, Kasai D, Hishiyama S, Otsuka Y, Nakamura M, Kajita S, Katayama Y, Fukuda M, Masai E.

Biosci Biotechnol Biochem. 2011;75(12):2404-7. Epub 2011 Dec 7.

45.

Characterization of the 1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene (DDE) degradation system in Janibacter sp. TYM3221.

Nguyen AT, Sato Y, Iwasaki T, Miyauchi K, Tokuda M, Kasai D, Masai E, Fukuda M.

Enzyme Microb Technol. 2011 Dec 10;49(6-7):532-9. doi: 10.1016/j.enzmictec.2011.06.017. Epub 2011 Jun 30.

PMID:
22142728
46.

Isolation and characterization of Streptomyces, Actinoplanes, and Methylibium strains that are involved in degradation of natural rubber and synthetic poly(cis-1,4-isoprene).

Imai S, Ichikawa K, Muramatsu Y, Kasai D, Masai E, Fukuda M.

Enzyme Microb Technol. 2011 Dec 10;49(6-7):526-31. doi: 10.1016/j.enzmictec.2011.05.014. Epub 2011 Jun 12.

PMID:
22142727
47.

The 24-bp consensus sequence responsible for regulation of the BphS1T1 two-component system in a hybrid promoter.

Shimodaira J, Furusawa Y, Miyazawa Y, Kasai D, Miyauchi K, Masai E, Fukuda M.

J Biosci Bioeng. 2012 Mar;113(3):279-85. doi: 10.1016/j.jbiosc.2011.10.021. Epub 2011 Dec 1.

PMID:
22133760
48.

Identification and characterization of uptake systems for glucose and fructose in Rhodococcus jostii RHA1.

Araki N, Suzuki T, Miyauchi K, Kasai D, Masai E, Fukuda M.

J Mol Microbiol Biotechnol. 2011;20(3):125-36. doi: 10.1159/000324330. Epub 2011 Apr 2.

PMID:
21464575
49.

Glucose-mediated transcriptional repression of PCB/biphenyl catabolic genes in Rhodococcus jostii RHA1.

Araki N, Niikura Y, Miyauchi K, Kasai D, Masai E, Fukuda M.

J Mol Microbiol Biotechnol. 2011;20(1):53-62. doi: 10.1159/000323509. Epub 2011 Feb 18.

PMID:
21335979
50.

Development of a strain for efficient degradation of polychlorinated biphenyls by patchwork assembly of degradation pathways.

Ohmori T, Morita H, Tanaka M, Miyauchi K, Kasai D, Furukawa K, Miyashita K, Ogawa N, Masai E, Fukuda M.

J Biosci Bioeng. 2011 Apr;111(4):437-42. doi: 10.1016/j.jbiosc.2010.12.002.

PMID:
21310654

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