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Items: 17

1.

A genome wide dosage suppressor network reveals genomic robustness.

Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, Adami C, Galas DJ, Raval A, Phizicky EM, Ray A.

Nucleic Acids Res. 2017 Jan 9;45(1):255-270. doi: 10.1093/nar/gkw1148. Epub 2016 Nov 29.

2.

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.

Burdick DB, Cavnor CC, Handcock J, Killcoyne S, Lin J, Marzolf B, Ramsey SA, Rovira H, Bressler R, Shmulevich I, Boyle J.

BMC Bioinformatics. 2010 Jul 14;11:377. doi: 10.1186/1471-2105-11-377.

3.

The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases.

Gehlenborg N, Hwang D, Lee IY, Yoo H, Baxter D, Petritis B, Pitstick R, Marzolf B, Dearmond SJ, Carlson GA, Hood L.

Database (Oxford). 2009;2009:bap011. Epub 2009 Sep 17.

4.

Gene expression relationship between prostate cancer cells of Gleason 3, 4 and normal epithelial cells as revealed by cell type-specific transcriptomes.

Pascal LE, Vêncio RZ, Page LS, Liebeskind ES, Shadle CP, Troisch P, Marzolf B, True LD, Hood LE, Liu AY.

BMC Cancer. 2009 Dec 18;9:452. doi: 10.1186/1471-2407-9-452.

5.

Prevalence of transcription promoters within archaeal operons and coding sequences.

Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, Baliga NS.

Mol Syst Biol. 2009;5:285. doi: 10.1038/msb.2009.42. Epub 2009 Jun 16.

6.

Circulating microRNAs, potential biomarkers for drug-induced liver injury.

Wang K, Zhang S, Marzolf B, Troisch P, Brightman A, Hu Z, Hood LE, Galas DJ.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4402-7. doi: 10.1073/pnas.0813371106. Epub 2009 Feb 25.

7.

Memory T cell RNA rearrangement programmed by heterogeneous nuclear ribonucleoprotein hnRNPLL.

Wu Z, Jia X, de la Cruz L, Su XC, Marzolf B, Troisch P, Zak D, Hamilton A, Whittle B, Yu D, Sheahan D, Bertram E, Aderem A, Otting G, Goodnow CC, Hoyne GF.

Immunity. 2008 Dec 19;29(6):863-75. doi: 10.1016/j.immuni.2008.11.004.

8.

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans.

Querec TD, Akondy RS, Lee EK, Cao W, Nakaya HI, Teuwen D, Pirani A, Gernert K, Deng J, Marzolf B, Kennedy K, Wu H, Bennouna S, Oluoch H, Miller J, Vencio RZ, Mulligan M, Aderem A, Ahmed R, Pulendran B.

Nat Immunol. 2009 Jan;10(1):116-125. doi: 10.1038/ni.1688. Epub 2008 Nov 23.

9.

The Innate Immune Database (IIDB).

Korb M, Rust AG, Thorsson V, Battail C, Li B, Hwang D, Kennedy KA, Roach JC, Rosenberger CM, Gilchrist M, Zak D, Johnson C, Marzolf B, Aderem A, Shmulevich I, Bolouri H.

BMC Immunol. 2008 Mar 5;9:7. doi: 10.1186/1471-2172-9-7.

10.

Transcriptional responses to fatty acid are coordinated by combinatorial control.

Smith JJ, Ramsey SA, Marelli M, Marzolf B, Hwang D, Saleem RA, Rachubinski RA, Aitchison JD.

Mol Syst Biol. 2007;3:115. Epub 2007 Jun 5.

11.

Prediction of phenotype and gene expression for combinations of mutations.

Carter GW, Prinz S, Neou C, Shelby JP, Marzolf B, Thorsson V, Galitski T.

Mol Syst Biol. 2007;3:96. Epub 2007 Mar 27.

12.

SLIMarray: lightweight software for microarray facility management.

Marzolf B, Troisch P.

Source Code Biol Med. 2006 Oct 26;1:5.

13.

SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.

Marzolf B, Deutsch EW, Moss P, Campbell D, Johnson MH, Galitski T.

BMC Bioinformatics. 2006 Jun 6;7:286.

14.

Identification of new flagellar genes of Salmonella enterica serovar Typhimurium.

Frye J, Karlinsey JE, Felise HR, Marzolf B, Dowidar N, McClelland M, Hughes KT.

J Bacteriol. 2006 Mar;188(6):2233-43.

15.

Gene expression profiles in prostate cancer: association with patient subgroups and tumour differentiation.

Halvorsen OJ, Oyan AM, Bø TH, Olsen S, Rostad K, Haukaas SA, Bakke AM, Marzolf B, Dimitrov K, Stordrange L, Lin B, Jonassen I, Hood L, Akslen LA, Kalland KH.

Int J Oncol. 2005 Feb;26(2):329-36.

PMID:
15645116
16.

Validation of microarray image analysis accuracy.

Marzolf B, Johnson MH.

Biotechniques. 2004 Feb;36(2):304-8. No abstract available.

17.

Analysis of acute myelogenous leukemia: preparation of samples for genomic and proteomic analyses.

Gjertsen BT, Øyan AM, Marzolf B, Hovland R, Gausdal G, Døskeland SO, Dimitrov K, Golden A, Kalland KH, Hood L, Bruserud Ø.

J Hematother Stem Cell Res. 2002 Jun;11(3):469-81. Review.

PMID:
12183832

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