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Determining degradation intermediates and the pathway of 3' to 5' degradation of histone mRNA using high-throughput sequencing.

Holmquist CE, Marzluff WF.

Methods. 2019 Feb 15;155:104-115. doi: 10.1016/j.ymeth.2018.11.001. Epub 2018 Nov 5. Review.


Role of oligouridylation in normal metabolism and regulated degradation of mammalian histone mRNAs.

Meaux SA, Holmquist CE, Marzluff WF.

Philos Trans R Soc Lond B Biol Sci. 2018 Nov 5;373(1762). pii: 20180170. doi: 10.1098/rstb.2018.0170.


Tissue-Dependent Expression and Translation of Circular RNAs with Recombinant AAV Vectors In Vivo.

Meganck RM, Borchardt EK, Castellanos Rivera RM, Scalabrino ML, Wilusz JE, Marzluff WF, Asokan A.

Mol Ther Nucleic Acids. 2018 Dec 7;13:89-98. doi: 10.1016/j.omtn.2018.08.008. Epub 2018 Aug 18.


Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker.

Skrajna A, Yang XC, Dadlez M, Marzluff WF, Dominski Z.

Nucleic Acids Res. 2018 May 18;46(9):4752-4770. doi: 10.1093/nar/gky133.


The N-terminal domains of FLASH and Lsm11 form a 2:1 heterotrimer for histone pre-mRNA 3'-end processing.

Aik WS, Lin MH, Tan D, Tripathy A, Marzluff WF, Dominski Z, Chou CY, Tong L.

PLoS One. 2017 Oct 11;12(10):e0186034. doi: 10.1371/journal.pone.0186034. eCollection 2017.


Birth and Death of Histone mRNAs.

Marzluff WF, Koreski KP.

Trends Genet. 2017 Oct;33(10):745-759. doi: 10.1016/j.tig.2017.07.014. Epub 2017 Aug 31. Review.


Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP.

Rieder LE, Koreski KP, Boltz KA, Kuzu G, Urban JA, Bowman SK, Zeidman A, Jordan WT 3rd, Tolstorukov MY, Marzluff WF, Duronio RJ, Larschan EN.

Genes Dev. 2017 Jul 15;31(14):1494-1508. doi: 10.1101/gad.300855.117. Epub 2017 Aug 24.


U7 snRNP is recruited to histone pre-mRNA in a FLASH-dependent manner by two separate regions of the stem-loop binding protein.

Skrajna A, Yang XC, Bucholc K, Zhang J, Hall TMT, Dadlez M, Marzluff WF, Dominski Z.

RNA. 2017 Jun;23(6):938-951. doi: 10.1261/rna.060806.117. Epub 2017 Mar 13.


Inducing circular RNA formation using the CRISPR endoribonuclease Csy4.

Borchardt EK, Meganck RM, Vincent HA, Ball CB, Ramos SBV, Moorman NJ, Marzluff WF, Asokan A.

RNA. 2017 May;23(5):619-627. doi: 10.1261/rna.056838.116. Epub 2017 Feb 21.


Coordinating cell cycle-regulated histone gene expression through assembly and function of the Histone Locus Body.

Duronio RJ, Marzluff WF.

RNA Biol. 2017 Jun 3;14(6):726-738. doi: 10.1080/15476286.2016.1265198. Epub 2017 Jan 6. Review.


A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues.

Lyons SM, Cunningham CH, Welch JD, Groh B, Guo AY, Wei B, Whitfield ML, Xiong Y, Marzluff WF.

Nucleic Acids Res. 2016 Nov 2;44(19):9190-9205. Epub 2016 Jul 8.


TUT7 catalyzes the uridylation of the 3' end for rapid degradation of histone mRNA.

Lackey PE, Welch JD, Marzluff WF.

RNA. 2016 Nov;22(11):1673-1688. Epub 2016 Sep 8.


DDB1 and CUL4 associated factor 11 (DCAF11) mediates degradation of Stem-loop binding protein at the end of S phase.

Djakbarova U, Marzluff WF, Köseoğlu MM.

Cell Cycle. 2016 Aug 2;15(15):1986-96. doi: 10.1080/15384101.2016.1191708. Epub 2016 Jun 2.


Concentrating pre-mRNA processing factors in the histone locus body facilitates efficient histone mRNA biogenesis.

Tatomer DC, Terzo E, Curry KP, Salzler H, Sabath I, Zapotoczny G, McKay DJ, Dominski Z, Marzluff WF, Duronio RJ.

J Cell Biol. 2016 Jun 6;213(5):557-70. doi: 10.1083/jcb.201504043. Epub 2016 May 30.


Synthetic mRNA with Superior Properties that Mimics the Intracellular Fates of Natural Histone mRNA.

Su W, Slevin MK, Marzluff WF, Rhoads RE.

Methods Mol Biol. 2016;1428:93-114. doi: 10.1007/978-1-4939-3625-0_6.


Mapping the Interaction Network of Key Proteins Involved in Histone mRNA Generation: A Hydrogen/Deuterium Exchange Study.

Skrajna A, Yang XC, Tarnowski K, Fituch K, Marzluff WF, Dominski Z, Dadlez M.

J Mol Biol. 2016 Mar 27;428(6):1180-1196. doi: 10.1016/j.jmb.2016.01.031. Epub 2016 Feb 6.


A multiprotein occupancy map of the mRNP on the 3' end of histone mRNAs.

Brooks L 3rd, Lyons SM, Mahoney JM, Welch JD, Liu Z, Marzluff WF, Whitfield ML.

RNA. 2015 Nov;21(11):1943-65. doi: 10.1261/rna.053389.115. Epub 2015 Sep 16.


Controlling mRNA stability and translation with the CRISPR endoribonuclease Csy4.

Borchardt EK, Vandoros LA, Huang M, Lackey PE, Marzluff WF, Asokan A.

RNA. 2015 Nov;21(11):1921-30. doi: 10.1261/rna.051227.115. Epub 2015 Sep 9.


EnD-Seq and AppEnD: sequencing 3' ends to identify nontemplated tails and degradation intermediates.

Welch JD, Slevin MK, Tatomer DC, Duronio RJ, Prins JF, Marzluff WF.

RNA. 2015 Jul;21(7):1375-89. doi: 10.1261/rna.048785.114. Epub 2015 May 26.


Twenty years of RNA: reflections on post-transcriptional regulation.

Marzluff WB.

RNA. 2015 Apr;21(4):687-9. doi: 10.1261/rna.050997.115. No abstract available.


Distinct self-interaction domains promote Multi Sex Combs accumulation in and formation of the Drosophila histone locus body.

Terzo EA, Lyons SM, Poulton JS, Temple BR, Marzluff WF, Duronio RJ.

Mol Biol Cell. 2015 Apr 15;26(8):1559-74. doi: 10.1091/mbc.E14-10-1445. Epub 2015 Feb 18. Erratum in: Mol Biol Cell. 2015 Jul 1;26(13):2574.


Drosophila Symplekin localizes dynamically to the histone locus body and tricellular junctions.

Tatomer DC, Rizzardi LF, Curry KP, Witkowski AM, Marzluff WF, Duronio RJ.

Nucleus. 2014;5(6):613-25. doi: 10.4161/19491034.2014.990860.


A conserved interaction that is essential for the biogenesis of histone locus bodies.

Yang XC, Sabath I, Kunduru L, van Wijnen AJ, Marzluff WF, Dominski Z.

J Biol Chem. 2014 Dec 5;289(49):33767-82. doi: 10.1074/jbc.M114.616466. Epub 2014 Oct 22.


Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.

Zhang J, Tan D, DeRose EF, Perera L, Dominski Z, Marzluff WF, Tong L, Hall TM.

Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):E2937-46. doi: 10.1073/pnas.1406381111. Epub 2014 Jul 7.


Genome stress response in early development.

Marzluff WF, Duronio RJ.

Dev Cell. 2014 May 27;29(4):375-6. doi: 10.1016/j.devcel.2014.05.010.


Deep sequencing shows multiple oligouridylations are required for 3' to 5' degradation of histone mRNAs on polyribosomes.

Slevin MK, Meaux S, Welch JD, Bigler R, Miliani de Marval PL, Su W, Rhoads RE, Prins JF, Marzluff WF.

Mol Cell. 2014 Mar 20;53(6):1020-30. doi: 10.1016/j.molcel.2014.02.027.


The C-terminal extension of Lsm4 interacts directly with the 3' end of the histone mRNP and is required for efficient histone mRNA degradation.

Lyons SM, Ricciardi AS, Guo AY, Kambach C, Marzluff WF.

RNA. 2014 Jan;20(1):88-102. doi: 10.1261/rna.042531.113. Epub 2013 Nov 19.


3'-End processing of histone pre-mRNAs in Drosophila: U7 snRNP is associated with FLASH and polyadenylation factors.

Sabath I, Skrajna A, Yang XC, Dadlez M, Marzluff WF, Dominski Z.

RNA. 2013 Dec;19(12):1726-44. doi: 10.1261/rna.040360.113. Epub 2013 Oct 21.


Translation regulation and proteasome mediated degradation cooperate to keep stem-loop binding protein low in G1-phase.

Djakbarova U, Marzluff WF, Köseoğlu MM.

J Cell Biochem. 2014 Mar;115(3):523-30. doi: 10.1002/jcb.24686.


Structural and biochemical studies of SLIP1-SLBP identify DBP5 and eIF3g as SLIP1-binding proteins.

von Moeller H, Lerner R, Ricciardi A, Basquin C, Marzluff WF, Conti E.

Nucleic Acids Res. 2013 Sep;41(16):7960-71. doi: 10.1093/nar/gkt558. Epub 2013 Jun 26.


A sequence in the Drosophila H3-H4 Promoter triggers histone locus body assembly and biosynthesis of replication-coupled histone mRNAs.

Salzler HR, Tatomer DC, Malek PY, McDaniel SL, Orlando AN, Marzluff WF, Duronio RJ.

Dev Cell. 2013 Mar 25;24(6):623-34. doi: 10.1016/j.devcel.2013.02.014.


Cell cycle-regulated protein abundance changes in synchronously proliferating HeLa cells include regulation of pre-mRNA splicing proteins.

Lane KR, Yu Y, Lackey PE, Chen X, Marzluff WF, Cook JG.

PLoS One. 2013;8(3):e58456. doi: 10.1371/journal.pone.0058456. Epub 2013 Mar 8.


Structure of histone mRNA stem-loop, human stem-loop binding protein, and 3'hExo ternary complex.

Tan D, Marzluff WF, Dominski Z, Tong L.

Science. 2013 Jan 18;339(6117):318-21. doi: 10.1126/science.1228705.


Circular RNAs are abundant, conserved, and associated with ALU repeats.

Jeck WR, Sorrentino JA, Wang K, Slevin MK, Burd CE, Liu J, Marzluff WF, Sharpless NE.

RNA. 2013 Feb;19(2):141-57. doi: 10.1261/rna.035667.112. Epub 2012 Dec 18. Erratum in: RNA. 2013 Mar;19(3):426.


Rare codons regulate KRas oncogenesis.

Lampson BL, Pershing NL, Prinz JA, Lacsina JR, Marzluff WF, Nicchitta CV, MacAlpine DM, Counter CM.

Curr Biol. 2013 Jan 7;23(1):70-5. doi: 10.1016/j.cub.2012.11.031. Epub 2012 Dec 13.


mRNAs containing the histone 3' stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3' end.

Su W, Slepenkov SV, Slevin MK, Lyons SM, Ziemniak M, Kowalska J, Darzynkiewicz E, Jemielity J, Marzluff WF, Rhoads RE.

RNA. 2013 Jan;19(1):1-16. doi: 10.1261/rna.034470.112. Epub 2012 Nov 27.


Histones: sequestered by Jabba in fatty storehouse.

Marzluff WF, Tatomer DC.

Curr Biol. 2012 Nov 20;22(22):R951-3. doi: 10.1016/j.cub.2012.10.004.


Novel 3' ends that support translation.

Marzluff WF.

Genes Dev. 2012 Nov 15;26(22):2457-60. doi: 10.1101/gad.207233.112.


Systematic reconstruction of RNA functional motifs with high-throughput microfluidics.

Martin L, Meier M, Lyons SM, Sit RV, Marzluff WF, Quake SR, Chang HY.

Nat Methods. 2012 Dec;9(12):1192-4. doi: 10.1038/nmeth.2225. Epub 2012 Nov 11.


An RNAi screen identifies additional members of the Drosophila Integrator complex and a requirement for cyclin C/Cdk8 in snRNA 3'-end formation.

Chen J, Ezzeddine N, Waltenspiel B, Albrecht TR, Warren WD, Marzluff WF, Wagner EJ.

RNA. 2012 Dec;18(12):2148-56. doi: 10.1261/rna.035725.112. Epub 2012 Oct 24.


A complex containing the CPSF73 endonuclease and other polyadenylation factors associates with U7 snRNP and is recruited to histone pre-mRNA for 3'-end processing.

Yang XC, Sabath I, Dębski J, Kaus-Drobek M, Dadlez M, Marzluff WF, Dominski Z.

Mol Cell Biol. 2013 Jan;33(1):28-37. doi: 10.1128/MCB.00653-12. Epub 2012 Oct 15.


The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination.

Krishnan N, Lam TT, Fritz A, Rempinski D, O'Loughlin K, Minderman H, Berezney R, Marzluff WF, Thapar R.

Mol Cell Biol. 2012 Nov;32(21):4306-22. doi: 10.1128/MCB.00382-12. Epub 2012 Aug 20.


A unified phylogeny-based nomenclature for histone variants.

Talbert PB, Ahmad K, Almouzni G, Ausió J, Berger F, Bhalla PL, Bonner WM, Cande WZ, Chadwick BP, Chan SW, Cross GA, Cui L, Dimitrov SI, Doenecke D, Eirin-López JM, Gorovsky MA, Hake SB, Hamkalo BA, Holec S, Jacobsen SE, Kamieniarz K, Khochbin S, Ladurner AG, Landsman D, Latham JA, Loppin B, Malik HS, Marzluff WF, Pehrson JR, Postberg J, Schneider R, Singh MB, Smith MM, Thompson E, Torres-Padilla ME, Tremethick DJ, Turner BM, Waterborg JH, Wollmann H, Yelagandula R, Zhu B, Henikoff S.

Epigenetics Chromatin. 2012 Jun 21;5:7. doi: 10.1186/1756-8935-5-7.


Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization.

Zhang M, Lam TT, Tonelli M, Marzluff WF, Thapar R.

Biochemistry. 2012 Apr 17;51(15):3215-31. doi: 10.1021/bi2018255. Epub 2012 Apr 3.


Coordinate inactivation of zinc finger transcription factors at mitosis.

Marzluff WF.

Cell Cycle. 2011 Dec 1;10(23):3994. doi: 10.4161/cc.10.23.18235. Epub 2011 Dec 1. No abstract available.


Drosophila histone locus bodies form by hierarchical recruitment of components.

White AE, Burch BD, Yang XC, Gasdaska PY, Dominski Z, Marzluff WF, Duronio RJ.

J Cell Biol. 2011 May 16;193(4):677-94. doi: 10.1083/jcb.201012077.


Interaction between FLASH and Lsm11 is essential for histone pre-mRNA processing in vivo in Drosophila.

Burch BD, Godfrey AC, Gasdaska PY, Salzler HR, Duronio RJ, Marzluff WF, Dominski Z.

RNA. 2011 Jun;17(6):1132-47. doi: 10.1261/rna.2566811. Epub 2011 Apr 27.


FLASH is required for the endonucleolytic cleavage of histone pre-mRNAs but is dispensable for the 5' exonucleolytic degradation of the downstream cleavage product.

Yang XC, Xu B, Sabath I, Kunduru L, Burch BD, Marzluff WF, Dominski Z.

Mol Cell Biol. 2011 Apr;31(7):1492-502. doi: 10.1128/MCB.00979-10. Epub 2011 Jan 18.


Mutation of the 5'-untranslated region stem-loop structure inhibits α1(I) collagen expression in vivo.

Parsons CJ, Stefanovic B, Seki E, Aoyama T, Latour AM, Marzluff WF, Rippe RA, Brenner DA.

J Biol Chem. 2011 Mar 11;286(10):8609-19. doi: 10.1074/jbc.M110.189118. Epub 2010 Dec 30.


More than one way to make a tail.

Marzluff WF.

EMBO J. 2010 Dec 15;29(24):4066-7. doi: 10.1038/emboj.2010.306. No abstract available. Erratum in: EMBO J. 2011 Feb 2;30(3):628.

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