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Items: 21

1.

Molecular basis of dengue virus serotype 2 morphological switch from 29°C to 37°C.

Lim XN, Shan C, Marzinek JK, Dong H, Ng TS, Ooi JSG, Fibriansah G, Wang J, Verma CS, Bond PJ, Shi PY, Lok SM.

PLoS Pathog. 2019 Sep 19;15(9):e1007996. doi: 10.1371/journal.ppat.1007996. eCollection 2019 Sep.

2.

The structural basis for membrane assembly of immunoreceptor signalling complexes.

Dube N, Marzinek JK, Glen RC, Bond PJ.

J Mol Model. 2019 Aug 27;25(9):277. doi: 10.1007/s00894-019-4165-6.

PMID:
31456056
3.

Multiscale modeling of innate immune receptors: Endotoxin recognition and regulation by host defense peptides.

Holdbrook DA, Huber RG, Marzinek JK, Stubbusch A, Schmidtchen A, Bond PJ.

Pharmacol Res. 2019 Sep;147:104372. doi: 10.1016/j.phrs.2019.104372. Epub 2019 Jul 24. Review.

PMID:
31351116
4.

A T164S mutation in the dengue virus NS1 protein is associated with greater disease severity in mice.

Chan KWK, Watanabe S, Jin JY, Pompon J, Teng D, Alonso S, Vijaykrishna D, Halstead SB, Marzinek JK, Bond PJ, Burla B, Torta F, Wenk MR, Ooi EE, Vasudevan SG.

Sci Transl Med. 2019 Jun 26;11(498). pii: eaat7726. doi: 10.1126/scitranslmed.aat7726.

PMID:
31243154
5.

Multiscale Modeling and Simulation Approaches to Lipid-Protein Interactions.

Huber RG, Carpenter TS, Dube N, Holdbrook DA, Ingólfsson HI, Irvine WA, Marzinek JK, Samsudin F, Allison JR, Khalid S, Bond PJ.

Methods Mol Biol. 2019;2003:1-30. doi: 10.1007/978-1-4939-9512-7_1.

PMID:
31218611
6.

Insights into water accessible pathways and the inactivation mechanism of proton translocation by the membrane-embedded domain of V-type ATPases.

Krah A, Marzinek JK, Bond PJ.

Biochim Biophys Acta Biomembr. 2019 May 1;1861(5):1004-1010. doi: 10.1016/j.bbamem.2019.02.010. Epub 2019 Mar 1.

PMID:
30831075
7.

The disordered plant dehydrin Lti30 protects the membrane during water-related stress by cross-linking lipids.

Gupta A, Marzinek JK, Jefferies D, Bond PJ, Harryson P, Wohland T.

J Biol Chem. 2019 Apr 19;294(16):6468-6482. doi: 10.1074/jbc.RA118.007163. Epub 2019 Feb 28.

PMID:
30819802
8.

Infectivity of Dengue Virus Serotypes 1 and 2 Is Correlated with E-Protein Intrinsic Dynamics but Not to Envelope Conformations.

Sharma KK, Lim XX, Tantirimudalige SN, Gupta A, Marzinek JK, Holdbrook D, Lim XYE, Bond PJ, Anand GS, Wohland T.

Structure. 2019 Apr 2;27(4):618-630.e4. doi: 10.1016/j.str.2018.12.006. Epub 2019 Jan 24.

PMID:
30686666
9.

Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody.

Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe JE Jr, Bond PJ, Lok SM.

Structure. 2019 Feb 5;27(2):253-267.e8. doi: 10.1016/j.str.2018.10.009. Epub 2018 Nov 21.

PMID:
30471923
10.

Single-molecule studies of flavivirus envelope dynamics: Experiment and computation.

Sharma KK, Marzinek JK, Tantirimudalige SN, Bond PJ, Wohland T.

Prog Biophys Mol Biol. 2019 May;143:38-51. doi: 10.1016/j.pbiomolbio.2018.09.001. Epub 2018 Sep 14. Review.

PMID:
30223001
11.

A Funneled Conformational Landscape Governs Flavivirus Fusion Peptide Interaction with Lipid Membranes.

Marzinek JK, Bag N, Huber RG, Holdbrook DA, Wohland T, Verma CS, Bond PJ.

J Chem Theory Comput. 2018 Jul 10;14(7):3920-3932. doi: 10.1021/acs.jctc.8b00438. Epub 2018 Jun 20.

PMID:
29874075
12.

The architecture of the OmpC-MlaA complex sheds light on the maintenance of outer membrane lipid asymmetry in Escherichia coli.

Yeow J, Tan KW, Holdbrook DA, Chong ZS, Marzinek JK, Bond PJ, Chng SS.

J Biol Chem. 2018 Jul 20;293(29):11325-11340. doi: 10.1074/jbc.RA118.002441. Epub 2018 May 30.

13.

Partial Intrinsic Disorder Governs the Dengue Capsid Protein Conformational Ensemble.

Boon PLS, Saw WG, Lim XX, Raghuvamsi PV, Huber RG, Marzinek JK, Holdbrook DA, Anand GS, Grüber G, Bond PJ.

ACS Chem Biol. 2018 Jun 15;13(6):1621-1630. doi: 10.1021/acschembio.8b00231. Epub 2018 Jun 5.

PMID:
29792674
14.

A Thermodynamic Funnel Drives Bacterial Lipopolysaccharide Transfer in the TLR4 Pathway.

Huber RG, Berglund NA, Kargas V, Marzinek JK, Holdbrook DA, Khalid S, Piggot TJ, Schmidtchen A, Bond PJ.

Structure. 2018 Aug 7;26(8):1151-1161.e4. doi: 10.1016/j.str.2018.04.007. Epub 2018 May 17.

15.

A polar SxxS motif drives assembly of the transmembrane domains of Toll-like receptor 4.

Kargas V, Marzinek JK, Holdbrook DA, Yin H, Ford RC, Bond PJ.

Biochim Biophys Acta Biomembr. 2017 Oct;1859(10):2086-2095. doi: 10.1016/j.bbamem.2017.07.010. Epub 2017 Jul 22.

16.

Multiscale molecular dynamics simulation approaches to the structure and dynamics of viruses.

Huber RG, Marzinek JK, Holdbrook DA, Bond PJ.

Prog Biophys Mol Biol. 2017 Sep;128:121-132. doi: 10.1016/j.pbiomolbio.2016.09.010. Epub 2016 Oct 17. Review.

PMID:
27765545
17.

South-east Asian Zika virus strain linked to cluster of cases in Singapore, August 2016.

Maurer-Stroh S, Mak TM, Ng YK, Phuah SP, Huber RG, Marzinek JK, Holdbrook DA, Lee RT, Cui L, Lin RT.

Euro Surveill. 2016 Sep 22;21(38). doi: 10.2807/1560-7917.ES.2016.21.38.30347.

18.

Pushing the Envelope: Dengue Viral Membrane Coaxed into Shape by Molecular Simulations.

Marzinek JK, Holdbrook DA, Huber RG, Verma C, Bond PJ.

Structure. 2016 Aug 2;24(8):1410-1420. doi: 10.1016/j.str.2016.05.014. Epub 2016 Jul 7.

19.

Characterizing the Conformational Landscape of Flavivirus Fusion Peptides via Simulation and Experiment.

Marzinek JK, Lakshminarayanan R, Goh E, Huber RG, Panzade S, Verma C, Bond PJ.

Sci Rep. 2016 Jan 20;6:19160. doi: 10.1038/srep19160.

20.

Free energy predictions of ligand binding to an α-helix using steered molecular dynamics and umbrella sampling simulations.

Marzinek JK, Bond PJ, Lian G, Zhao Y, Han L, Noro MG, Pistikopoulos EN, Mantalaris A.

J Chem Inf Model. 2014 Jul 28;54(7):2093-104. doi: 10.1021/ci500164q. Epub 2014 Jul 17.

PMID:
25003283
21.

A study on Fe(2+) - α-helical-rich keratin complex formation using isothermal titration calorimetry and molecular dynamics simulation.

Zhao Y, Marzinek JK, Bond PJ, Chen L, Li Q, Mantalaris A, Pistikopoulos EN, Noro MG, Han L, Lian G.

J Pharm Sci. 2014 Apr;103(4):1224-32. doi: 10.1002/jps.23895. Epub 2014 Feb 11.

PMID:
24515268

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