Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 43

1.

Rapid and highly-specific generation of targeted DNA sequencing libraries enabled by linking capture probes with universal primers.

Pel J, Leung A, Choi WWY, Despotovic M, Ung WL, Shibahara G, Gelinas L, Marziali A.

PLoS One. 2018 Dec 5;13(12):e0208283. doi: 10.1371/journal.pone.0208283. eCollection 2018.

2.

Duplex Proximity Sequencing (Pro-Seq): A method to improve DNA sequencing accuracy without the cost of molecular barcoding redundancy.

Pel J, Choi WWY, Leung A, Shibahara G, Gelinas L, Despotovic M, Ung WL, Marziali A.

PLoS One. 2018 Oct 2;13(10):e0204265. doi: 10.1371/journal.pone.0204265. eCollection 2018.

3.

Somatic mutation detection using various targeted detection assays in paired samples of circulating tumor DNA, primary tumor and metastases from patients undergoing resection of colorectal liver metastases.

Beije N, Helmijr JC, Weerts MJA, Beaufort CM, Wiggin M, Marziali A, Verhoef C, Sleijfer S, Jansen MPHM, Martens JWM.

Mol Oncol. 2016 Dec;10(10):1575-1584. doi: 10.1016/j.molonc.2016.10.001.

4.

Circulating tumour DNA analysis demonstrates spatial mutational heterogeneity that coincides with disease relapse in myeloma.

Mithraprabhu S, Khong T, Ramachandran M, Chow A, Klarica D, Mai L, Walsh S, Broemeling D, Marziali A, Wiggin M, Hocking J, Kalff A, Durie B, Spencer A.

Leukemia. 2017 Aug;31(8):1695-1705. doi: 10.1038/leu.2016.366. Epub 2016 Nov 30.

PMID:
27899805
5.

Enumeration and targeted analysis of KRAS, BRAF and PIK3CA mutations in CTCs captured by a label-free platform: Comparison to ctDNA and tissue in metastatic colorectal cancer.

Kidess-Sigal E, Liu HE, Triboulet MM, Che J, Ramani VC, Visser BC, Poultsides GA, Longacre TA, Marziali A, Vysotskaia V, Wiggin M, Heirich K, Hanft V, Keilholz U, Tinhofer I, Norton JA, Lee M, Sollier-Christen E, Jeffrey SS.

Oncotarget. 2016 Dec 20;7(51):85349-85364. doi: 10.18632/oncotarget.13350.

6.

Oral ulcer by Sphingomonas paucimobilis: first report.

Santarelli A, Mascitti M, Galeazzi R, Marziali A, Busco F, Procaccini M.

Int J Oral Maxillofac Surg. 2016 Oct;45(10):1280-2. doi: 10.1016/j.ijom.2016.07.006. Epub 2016 Aug 8.

PMID:
27515851
7.

Electrocardiographic Eligibility for Subcutaneous Implantable Cardioverter Defibrillator: Evaluation during Bicycle Exercise.

Ziacchi M, Corzani A, Diemberger I, Martignani C, Marziali A, Mazzotti A, Massaro G, Rapezzi C, Biffi M, Boriani G.

Heart Lung Circ. 2016 May;25(5):476-83. doi: 10.1016/j.hlc.2015.10.016. Epub 2015 Nov 18.

PMID:
27044657
8.

Mutation profiling of tumor DNA from plasma and tumor tissue of colorectal cancer patients with a novel, high-sensitivity multiplexed mutation detection platform.

Kidess E, Heirich K, Wiggin M, Vysotskaia V, Visser BC, Marziali A, Wiedenmann B, Norton JA, Lee M, Jeffrey SS, Poultsides GA.

Oncotarget. 2015 Feb 10;6(4):2549-61.

9.

Disentangling steric and electrostatic factors in nanoscale transport through confined space.

Buchsbaum SF, Mitchell N, Martin H, Wiggin M, Marziali A, Coveney PV, Siwy Z, Howorka S.

Nano Lett. 2013 Aug 14;13(8):3890-6. doi: 10.1021/nl401968r. Epub 2013 Jul 10.

PMID:
23819625
10.

Nanopore analysis of wild-type and mutant prion protein (PrP(C)): single molecule discrimination and PrP(C) kinetics.

Jetha NN, Semenchenko V, Wishart DS, Cashman NR, Marziali A.

PLoS One. 2013;8(2):e54982. doi: 10.1371/journal.pone.0054982. Epub 2013 Feb 5.

11.

Direct observation of translocation in individual DNA polymerase complexes.

Dahl JM, Mai AH, Cherf GM, Jetha NN, Garalde DR, Marziali A, Akeson M, Wang H, Lieberman KR.

J Biol Chem. 2012 Apr 13;287(16):13407-21. doi: 10.1074/jbc.M111.338418. Epub 2012 Feb 29.

12.

Winnowing DNA for rare sequences: highly specific sequence and methylation based enrichment.

Thompson JD, Shibahara G, Rajan S, Pel J, Marziali A.

PLoS One. 2012;7(2):e31597. doi: 10.1371/journal.pone.0031597. Epub 2012 Feb 15.

13.

Long dwell-time passage of DNA through nanometer-scale pores: kinetics and sequence dependence of motion.

Jetha NN, Feehan C, Wiggin M, Tabard-Cossa V, Marziali A.

Biophys J. 2011 Jun 22;100(12):2974-80. doi: 10.1016/j.bpj.2011.05.007.

14.

Evidence that small proteins translocate through silicon nitride pores in a folded conformation.

Stefureac RI, Trivedi D, Marziali A, Lee JS.

J Phys Condens Matter. 2010 Nov 17;22(45):454133. doi: 10.1088/0953-8984/22/45/454133. Epub 2010 Oct 29.

PMID:
21339619
15.

Efficient genomic DNA extraction from low target concentration bacterial cultures using SCODA DNA extraction technology.

So A, Pel J, Rajan S, Marziali A.

Cold Spring Harb Protoc. 2010 Oct 1;2010(10):pdb.prot5506. doi: 10.1101/pdb.prot5506.

PMID:
20889703
16.

[The CONVERT trial].

Boriani G, Marziali A, Cappato R.

G Ital Cardiol (Rome). 2009 Sep;10(9):561-4; discussion 564-5. Italian. No abstract available.

PMID:
19891247
17.

Single-molecule bonds characterized by solid-state nanopore force spectroscopy.

Tabard-Cossa V, Wiggin M, Trivedi D, Jetha NN, Dwyer JR, Marziali A.

ACS Nano. 2009 Oct 27;3(10):3009-14. doi: 10.1021/nn900713a.

18.

Nonlinear electrophoretic response yields a unique parameter for separation of biomolecules.

Pel J, Broemeling D, Mai L, Poon HL, Tropini G, Warren RL, Holt RA, Marziali A.

Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14796-801. doi: 10.1073/pnas.0907402106. Epub 2009 Aug 17.

19.

Nanopore force spectroscopy on DNA duplexes.

Jetha NN, Wiggin M, Marziali A.

Methods Mol Biol. 2009;544:129-50. doi: 10.1007/978-1-59745-483-4_10.

PMID:
19488698
20.

Forming an alpha-hemolysin nanopore for single-molecule analysis.

Jetha NN, Wiggin M, Marziali A.

Methods Mol Biol. 2009;544:113-27. doi: 10.1007/978-1-59745-483-4_9.

PMID:
19488697
21.

A changing scenario in the clinical use of implantable defibrillators: the need for long-term data on lead performance.

Boriani G, Biffi M, Marziali A, Diemberger I, Martignani C.

Europace. 2009 Jan;11(1):1-3. doi: 10.1093/europace/eun339. No abstract available.

PMID:
19088360
22.

Atrial fibrillation: adverse effects of "pill-in-the-pocket" treatment and propafenone-carvedilol interaction.

Boriani G, Biffi M, Diemberger I, Domenichini G, Marziali A, Martignani C.

Int J Cardiol. 2010 Apr 15;140(2):242-3; author reply 243-4. doi: 10.1016/j.ijcard.2008.11.028. Epub 2008 Dec 5.

PMID:
19062111
23.

The potential and challenges of nanopore sequencing.

Branton D, Deamer DW, Marziali A, Bayley H, Benner SA, Butler T, Di Ventra M, Garaj S, Hibbs A, Huang X, Jovanovich SB, Krstic PS, Lindsay S, Ling XS, Mastrangelo CH, Meller A, Oliver JS, Pershin YV, Ramsey JM, Riehn R, Soni GV, Tabard-Cossa V, Wanunu M, Wiggin M, Schloss JA.

Nat Biotechnol. 2008 Oct;26(10):1146-53. doi: 10.1038/nbt.1495. Review.

24.

Nonexponential kinetics of DNA escape from alpha-hemolysin nanopores.

Wiggin M, Tropini C, Tabard-Cossa V, Jetha NN, Marziali A.

Biophys J. 2008 Dec;95(11):5317-23. doi: 10.1529/biophysj.108.137760. Epub 2008 Sep 5.

25.

An instrument for automated purification of nucleic acids from contaminated forensic samples.

Broemeling DJ, Pel J, Gunn DC, Mai L, Thompson JD, Poon H, Marziali A.

JALA Charlottesv Va. 2008 Feb;13(1):40-48.

26.

An automated nanoliter dispenser for staining individual biopsies in tissue microarrays.

Slobodan J, Gunn D, Thompson J, Guggenheimer K, Brown K, Homenuke M, Belak R, Banerjee D, Broemeling D, Marziali A.

Int J Oncol. 2007 Apr;30(4):857-63.

PMID:
17332924
27.

Multi-nanopore force spectroscopy for DNA analysis.

Tropini C, Marziali A.

Biophys J. 2007 Mar 1;92(5):1632-7. Epub 2006 Dec 8.

28.

Portable dynamic light scattering instrument and method for the measurement of blood platelet suspensions.

Maurer-Spurej E, Brown K, Labrie A, Marziali A, Glatter O.

Phys Med Biol. 2006 Aug 7;51(15):3747-58. Epub 2006 Jul 20.

PMID:
16861778
29.

Electrostatic device for active transfer of submicroliter samples from syringe pipettors.

Jetha NN, Marziali A.

Biotechniques. 2006 Feb;40(2):148, 150, 152 passim. No abstract available.

30.

Simple, robust methods for high-throughput nanoliter-scale DNA sequencing.

Smailus DE, Marziali A, Dextras P, Marra MA, Holt RA.

Genome Res. 2005 Oct;15(10):1447-50. Epub 2005 Sep 16.

31.

Contaminant-induced current decline in capillary array electrophoresis.

Coope RJ, Marziali A.

Electrophoresis. 2005 Jun;26(11):2128-37.

PMID:
15852354
32.

Novel electrophoresis mechanism based on synchronous alternating drag perturbation.

Marziali A, Pel J, Bizzotto D, Whitehead LA.

Electrophoresis. 2005 Jan;26(1):82-90.

PMID:
15624147
33.

A nanosensor for transmembrane capture and identification of single nucleic Acid molecules.

Nakane J, Wiggin M, Marziali A.

Biophys J. 2004 Jul;87(1):615-21. Erratum in: Biophys J. 2004 Nov;87(5):3618.

34.

Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome.

Krzywinski M, Wallis J, Gösele C, Bosdet I, Chiu R, Graves T, Hummel O, Layman D, Mathewson C, Wye N, Zhu B, Albracht D, Asano J, Barber S, Brown-John M, Chan S, Chand S, Cloutier A, Davito J, Fjell C, Gaige T, Ganten D, Girn N, Guggenheimer K, Himmelbauer H, Kreitler T, Leach S, Lee D, Lehrach H, Mayo M, Mead K, Olson T, Pandoh P, Prabhu AL, Shin H, Tänzer S, Thompson J, Tsai M, Walker J, Yang G, Sekhon M, Hillier L, Zimdahl H, Marziali A, Osoegawa K, Zhao S, Siddiqui A, de Jong PJ, Warren W, Mardis E, McPherson JD, Wilson R, Hübner N, Jones S, Marra M, Schein J.

Genome Res. 2004 Apr;14(4):766-79.

35.

Facilitated loading of horizontal gels using a capillary comb loader.

Thompson J, Pugh T, Guggenheimer K, Safarpour A, Christie A, Pel J, Chow S, Marziali A.

Biotechniques. 2003 Apr;34(4):814-8. No abstract available.

36.

Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules.

Vercoutere WA, Winters-Hilt S, DeGuzman VS, Deamer D, Ridino SE, Rodgers JT, Olsen HE, Marziali A, Akeson M.

Nucleic Acids Res. 2003 Feb 15;31(4):1311-8.

37.

Resuspension of DNA sequencing reaction products in agarose increases sequence quality on an automated sequencer.

Vatcher G, Smailus D, Krzywinski M, Guin R, Stott J, Tsai M, Chan S, Pandoh P, Yang G, Asano J, Olson T, Prabhu AL, Coope R, Marziali A, Schein J, Jones S, Marra M.

Biotechniques. 2002 Sep;33(3):532-4, 536, 538-9.

38.

Evaluation of nanopores as candidates for electronic analyte detection.

Nakane J, Akeson M, Marziali A.

Electrophoresis. 2002 Aug;23(16):2592-601.

PMID:
12210162
39.

New DNA sequencing methods.

Marziali A, Akeson M.

Annu Rev Biomed Eng. 2001;3:195-223. Review.

PMID:
11447062
40.

A method for parallel, automated, thermal cycling of submicroliter samples.

Nakane J, Broemeling D, Donaldson R, Marziali A, Willis TD, O'Keefe M, Davis RW.

Genome Res. 2001 Mar;11(3):441-7.

41.

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.

Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW.

Nature. 2000 Dec 14;408(6814):816-20.

PMID:
11130712
42.

An automated sample preparation system for large-scale DNA sequencing.

Marziali A, Willis TD, Federspiel NA, Davis RW.

Genome Res. 1999 May;9(5):457-62.

43.

An arrayable flow-through microcentrifuge for high-throughput instrumentation.

Marziali A, Willis TD, Davis RW.

Proc Natl Acad Sci U S A. 1999 Jan 5;96(1):61-6.

Supplemental Content

Loading ...
Support Center