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Items: 1 to 50 of 104

1.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.

Gerresheim GK, Bathke J, Michel AM, Andreev DE, Shalamova LA, Rossbach O, Hu P, Glebe D, Fricke M, Marz M, Goesmann A, Kiniry SJ, Baranov PV, Shatsky IN, Niepmann M.

Int J Mol Sci. 2019 Mar 15;20(6). pii: E1321. doi: 10.3390/ijms20061321.

2.

Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon.

Wegner CE, Gaspar M, Geesink P, Herrmann M, Marz M, Küsel K.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02346-18. doi: 10.1128/AEM.02346-18. Print 2019 Mar 1.

PMID:
30578263
3.

Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation.

Chen Z, Amro EM, Becker F, Hölzer M, Rasa SMM, Njeru SN, Han B, Di Sanzo S, Chen Y, Tang D, Tao S, Haenold R, Groth M, Romanov VS, Kirkpatrick JM, Kraus JM, Kestler HA, Marz M, Ori A, Neri F, Morita Y, Rudolph KL.

J Exp Med. 2019 Jan 7;216(1):152-175. doi: 10.1084/jem.20181505. Epub 2018 Dec 7.

4.

Shearlet-based compressed sensing for fast 3D cardiac MR imaging using iterative reweighting.

Ma J, März M, Funk S, Schulz-Menger J, Kutyniok G, Schaeffter T, Kolbitsch C.

Phys Med Biol. 2018 Nov 22;63(23):235004. doi: 10.1088/1361-6560/aaea04.

PMID:
30465546
5.

SilentMutations (SIM): A tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs.

Desirò D, Hölzer M, Ibrahim B, Marz M.

Virus Res. 2019 Jan 15;260:135-141. doi: 10.1016/j.virusres.2018.11.005. Epub 2018 Nov 12.

PMID:
30439394
6.

Epitaxial growth of C60 on highly oriented pyrolytic graphite surfaces studied at low temperatures.

Seydel E, Hoffmann-Vogel R, Marz M.

Nanotechnology. 2019 Jan 11;30(2):025703. doi: 10.1088/1361-6528/aae7ed. Epub 2018 Nov 1.

PMID:
30382026
7.

Azodicarboxylate-free esterification with triphenylphosphine mediated by flavin and visible light: method development and stereoselectivity control.

März M, Kohout M, Neveselý T, Chudoba J, Prukała D, Niziński S, Sikorski M, Burdziński G, Cibulka R.

Org Biomol Chem. 2018 Sep 19;16(36):6809-6817. doi: 10.1039/c8ob01822g.

PMID:
30203820
8.

Global importance of RNA secondary structures in protein-coding sequences.

Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M.

Bioinformatics. 2019 Feb 15;35(4):579-583. doi: 10.1093/bioinformatics/bty678.

PMID:
30101307
9.

Pediatric acute lymphoblastic leukemia-Conquering the CNS across the choroid plexus.

März M, Meyer S, Erb U, Georgikou C, Horstmann MA, Hetjens S, Weiß C, Fallier-Becker P, Vandenhaute E, Ishikawa H, Schroten H, Dürken M, Karremann M.

Leuk Res. 2018 Aug;71:47-54. doi: 10.1016/j.leukres.2018.07.001. Epub 2018 Jul 8.

PMID:
30005184
10.

Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M.

Viruses. 2018 May 14;10(5). pii: E256. doi: 10.3390/v10050256.

11.

A new era of virus bioinformatics.

Ibrahim B, McMahon DP, Hufsky F, Beer M, Deng L, Mercier PL, Palmarini M, Thiel V, Marz M.

Virus Res. 2018 Jun 2;251:86-90. doi: 10.1016/j.virusres.2018.05.009. Epub 2018 May 8. Review.

PMID:
29751021
12.

Virologists-Heroes need weapons.

Hufsky F, Ibrahim B, Beer M, Deng L, Mercier PL, McMahon DP, Palmarini M, Thiel V, Marz M.

PLoS Pathog. 2018 Feb 8;14(2):e1006771. doi: 10.1371/journal.ppat.1006771. eCollection 2018 Feb. No abstract available.

13.

Multiple Roots of Fruiting Body Formation in Amoebozoa.

Hillmann F, Forbes G, Novohradská S, Ferling I, Riege K, Groth M, Westermann M, Marz M, Spaller T, Winckler T, Schaap P, Glöckner G.

Genome Biol Evol. 2018 Feb 1;10(2):591-606. doi: 10.1093/gbe/evy011.

14.

Effects of allelic variations in the human myxovirus resistance protein A on its antiviral activity.

Graf L, Dick A, Sendker F, Barth E, Marz M, Daumke O, Kochs G.

J Biol Chem. 2018 Mar 2;293(9):3056-3072. doi: 10.1074/jbc.M117.812784. Epub 2018 Jan 12.

15.

Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions.

Madhugiri R, Karl N, Petersen D, Lamkiewicz K, Fricke M, Wend U, Scheuer R, Marz M, Ziebuhr J.

Virology. 2018 Apr;517:44-55. doi: 10.1016/j.virol.2017.11.025. Epub 2017 Dec 6.

PMID:
29223446
16.

Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".

Hölzer M, Marz M.

Adv Virus Res. 2017;99:233-257. doi: 10.1016/bs.aivir.2017.08.004. Epub 2017 Sep 28.

PMID:
29029728
17.

A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri.

Baumgart M, Barth E, Savino A, Groth M, Koch P, Petzold A, Arisi I, Platzer M, Marz M, Cellerino A.

BMC Genomics. 2017 Sep 5;18(1):693. doi: 10.1186/s12864-017-3951-8.

18.

Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany.

Möbius P, Nordsiek G, Hölzer M, Jarek M, Marz M, Köhler H.

Genome Announc. 2017 Aug 24;5(34). pii: e00870-17. doi: 10.1128/genomeA.00870-17.

19.

Near-equilibrium measurement of quantum size effects using Kelvin probe force microscopy.

Späth T, Popp M, Pérez León C, Marz M, Hoffmann-Vogel R.

Nanoscale. 2017 Jun 14;9(23):7868-7874. doi: 10.1039/c7nr01874f.

PMID:
28555693
20.

Evolution and Antiviral Specificities of Interferon-Induced Mx Proteins of Bats against Ebola, Influenza, and Other RNA Viruses.

Fuchs J, Hölzer M, Schilling M, Patzina C, Schoen A, Hoenen T, Zimmer G, Marz M, Weber F, Müller MA, Kochs G.

J Virol. 2017 Jul 12;91(15). pii: e00361-17. doi: 10.1128/JVI.00361-17. Print 2017 Aug 1.

21.

Mutational landscape reflects the biological continuum of plasma cell dyscrasias.

Rossi A, Voigtlaender M, Janjetovic S, Thiele B, Alawi M, März M, Brandt A, Hansen T, Radloff J, Schön G, Hegenbart U, Schönland S, Langer C, Bokemeyer C, Binder M.

Blood Cancer J. 2017 Feb 24;7(2):e537. doi: 10.1038/bcj.2017.19.

22.

Monitoring multiple myeloma by next-generation sequencing of V(D)J rearrangements from circulating myeloma cells and cell-free myeloma DNA.

Oberle A, Brandt A, Voigtlaender M, Thiele B, Radloff J, Schulenkorf A, Alawi M, Akyüz N, März M, Ford CT, Krohn-Grimberghe A, Binder M.

Haematologica. 2017 Jun;102(6):1105-1111. doi: 10.3324/haematol.2016.161414. Epub 2017 Feb 9.

23.

Photocatalytic esterification under Mitsunobu reaction conditions mediated by flavin and visible light.

März M, Chudoba J, Kohout M, Cibulka R.

Org Biomol Chem. 2017 Mar 1;15(9):1970-1975. doi: 10.1039/c6ob02770a.

PMID:
28182181
24.

Integrins are required for tissue organization and restriction of neurogenesis in regenerating planarians.

Seebeck F, März M, Meyer AW, Reuter H, Vogg MC, Stehling M, Mildner K, Zeuschner D, Rabert F, Bartscherer K.

Development. 2017 Mar 1;144(5):795-807. doi: 10.1242/dev.139774. Epub 2017 Jan 30.

25.

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.

Riege K, Hölzer M, Klassert TE, Barth E, Bräuer J, Collatz M, Hufsky F, Mostajo N, Stock M, Vogel B, Slevogt H, Marz M.

Sci Rep. 2017 Jan 17;7:40598. doi: 10.1038/srep40598.

26.

Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection.

Klassert TE, Bräuer J, Hölzer M, Stock M, Riege K, Zubiría-Barrera C, Müller MM, Rummler S, Skerka C, Marz M, Slevogt H.

Sci Rep. 2017 Jan 17;7:40599. doi: 10.1038/srep40599.

27.

Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. No abstract available.

28.

Shame in Medical Education: A Randomized Study of the Acquisition of Intimate Examination Skills and Its Effect on Subsequent Performance.

Hautz WE, Schröder T, Dannenberg KA, März M, Hölzer H, Ahlers O, Thomas A.

Teach Learn Med. 2017 Apr-Jun;29(2):196-206. doi: 10.1080/10401334.2016.1254636. Epub 2017 Jan 4.

PMID:
28051893
29.

Structure and local charging of electromigrated Au nanocontacts.

Arnold D, Marz M, Schneider S, Hoffmann-Vogel R.

Nanotechnology. 2017 Feb 3;28(5):055206. doi: 10.1088/1361-6528/28/5/055206. Epub 2016 Dec 29.

PMID:
28032610
30.

Correction: Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina).

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K.

PLoS Genet. 2016 Dec 5;12(12):e1006491. doi: 10.1371/journal.pgen.1006491. eCollection 2016 Dec.

31.

Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer.

Starke R, Müller M, Gaspar M, Marz M, Küsel K, Totsche KU, von Bergen M, Jehmlich N.

J Proteomics. 2017 Jan 30;152:153-160. doi: 10.1016/j.jprot.2016.11.003. Epub 2016 Nov 10.

PMID:
27838466
32.

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Erratum in: Sci Rep. 2017 Jan 11;7:39421.

33.

Coronavirus cis-Acting RNA Elements.

Madhugiri R, Fricke M, Marz M, Ziebuhr J.

Adv Virus Res. 2016;96:127-163. doi: 10.1016/bs.aivir.2016.08.007. Epub 2016 Sep 6. Review.

PMID:
27712622
34.

Finding approximate gene clusters with Gecko 3.

Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S.

Nucleic Acids Res. 2016 Nov 16;44(20):9600-9610. Epub 2016 Sep 26.

35.

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3' untranslated region: function in replication and influence of RNA secondary structure.

Gerresheim GK, Dünnes N, Nieder-Röhrmann A, Shalamova LA, Fricke M, Hofacker I, Höner Zu Siederdissen C, Marz M, Niepmann M.

Cell Mol Life Sci. 2017 Feb;74(4):747-760. doi: 10.1007/s00018-016-2377-9. Epub 2016 Sep 27.

PMID:
27677491
36.

Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2016 Oct;22(10):1640.1. doi: 10.1261/rna.058123.116. No abstract available.

37.

"Pass, fail" - On Standard Setting Procedures for the Assessment of Practical Skills at Medical Schools in Germany, Austria, and Switzerland.

Bauer D, Huwendiek S, März M.

GMS J Med Educ. 2016 Aug 15;33(4):Doc50. doi: 10.3205/zma001049. eCollection 2016. No abstract available.

38.

Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3.

Hölzer M, Laroucau K, Creasy HH, Ott S, Vorimore F, Bavoil PM, Marz M, Sachse K.

Genome Announc. 2016 Jul 21;4(4). pii: e00708-16. doi: 10.1128/genomeA.00708-16.

39.

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.

Fricke M, Marz M.

Bioinformatics. 2016 Oct 1;32(19):2928-35. doi: 10.1093/bioinformatics/btw323. Epub 2016 Jun 10.

PMID:
27288498
40.

Total body irradiation-an attachment free sweeping beam technique.

Härtl PM, Treutwein M, Hautmann MG, März M, Pohl F, Kölbl O, Dobler B.

Radiat Oncol. 2016 Jun 10;11:81. doi: 10.1186/s13014-016-0658-y.

41.

The Evolution of COP9 Signalosome in Unicellular and Multicellular Organisms.

Barth E, Hübler R, Baniahmad A, Marz M.

Genome Biol Evol. 2016 May 2;8(4):1279-89. doi: 10.1093/gbe/evw073.

42.

Atomic-Scale Imaging of the Surface Dipole Distribution of Stepped Surfaces.

Pérez León C, Drees H, Wippermann SM, Marz M, Hoffmann-Vogel R.

J Phys Chem Lett. 2016 Feb 4;7(3):426-30. doi: 10.1021/acs.jpclett.5b02650. Epub 2016 Jan 15.

PMID:
26758503
43.

The choroid plexus may be an underestimated site of tumor invasion to the brain: an in vitro study using neuroblastoma cell lines.

Vandenhaute E, Stump-Guthier C, Lasierra Losada M, Tenenbaum T, Rudolph H, Ishikawa H, Schwerk C, Schroten H, Dürken M, März M, Karremann M.

Cancer Cell Int. 2015 Oct 24;15:102. doi: 10.1186/s12935-015-0257-2. eCollection 2015.

44.

Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany.

Möbius P, Hölzer M, Felder M, Nordsiek G, Groth M, Köhler H, Reichwald K, Platzer M, Marz M.

Genome Biol Evol. 2015 Sep;7(9):2585-2601. Epub 2015 Sep 17.

45.

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes.

Sahyoun AH, Hölzer M, Jühling F, Höner zu Siederdissen C, Al-Arab M, Tout K, Marz M, Middendorf M, Stadler PF, Bernt M.

Nucleic Acids Res. 2015 Sep 18;43(16):8044-56. doi: 10.1093/nar/gkv746. Epub 2015 Jul 30.

46.

Epidermal growth factor receptor mutation mediates cross-resistance to panitumumab and cetuximab in gastrointestinal cancer.

Braig F, März M, Schieferdecker A, Schulte A, Voigt M, Stein A, Grob T, Alawi M, Indenbirken D, Kriegs M, Engel E, Vanhoefer U, Grundhoff A, Loges S, Riecken K, Fehse B, Bokemeyer C, Binder M.

Oncotarget. 2015 May 20;6(14):12035-47.

47.

Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2015 Jul;21(7):1219-32. doi: 10.1261/rna.049338.114. Epub 2015 May 11. Erratum in: RNA. 2016 Oct;22(10 ):1640.1.

48.

Development and Evaluation of Two Canine Low-Fidelity Simulation Models.

Aulmann M, März M, Burgener IA, Alef M, Otto S, Mülling CK.

J Vet Med Educ. 2015 Summer;42(2):151-60. doi: 10.3138/jvme.1114-114R. Epub 2015 May 7.

PMID:
25862399
49.

MicroRNAs as biomarker of Parkinson disease? Small but mighty.

Marz M, Ferracin M, Klein C.

Neurology. 2015 Feb 17;84(7):636-8. doi: 10.1212/WNL.0000000000001275. Epub 2015 Jan 16. No abstract available.

PMID:
25596504
50.

Defining the transcriptomic landscape of Candida glabrata by RNA-Seq.

Linde J, Duggan S, Weber M, Horn F, Sieber P, Hellwig D, Riege K, Marz M, Martin R, Guthke R, Kurzai O.

Nucleic Acids Res. 2015 Feb 18;43(3):1392-406. doi: 10.1093/nar/gku1357. Epub 2015 Jan 13.

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