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Items: 1 to 50 of 118

1.

Conserved aging-related signatures of senescence and inflammation in different tissues and species.

Barth E, Srivastava A, Stojiljkovic M, Frahm C, Axer H, Witte OW, Marz M.

Aging (Albany NY). 2019 Oct 12;11. doi: 10.18632/aging.102345. [Epub ahead of print]

2.

Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines.

Morales-Prieto DM, Barth E, Murrieta-Coxca JM, Favaro RR, Gutiérrez-Samudio RN, Chaiwangyen W, Ospina-Prieto S, Gruhn B, Schleußner E, Marz M, Markert UR.

Placenta. 2019 Sep 12;88:20-27. doi: 10.1016/j.placenta.2019.09.005. [Epub ahead of print]

PMID:
31586768
3.

Virus- and Interferon Alpha-Induced Transcriptomes of Cells from the Microbat Myotis daubentonii.

Hölzer M, Schoen A, Wulle J, Müller MA, Drosten C, Marz M, Weber F.

iScience. 2019 Sep 27;19:647-661. doi: 10.1016/j.isci.2019.08.016. Epub 2019 Aug 10.

4.

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis.

Viehweger A, Krautwurst S, Lamkiewicz K, Madhugiri R, Ziebuhr J, Hölzer M, Marz M.

Genome Res. 2019 Sep;29(9):1545-1554. doi: 10.1101/gr.247064.118. Epub 2019 Aug 22.

PMID:
31439691
5.

Exploring the introduction of entrustment rating scales in an existing objective structured clinical examination.

Holzhausen Y, Maaz A, März M, Sehy V, Peters H.

BMC Med Educ. 2019 Aug 22;19(1):319. doi: 10.1186/s12909-019-1736-2.

6.

Preparation of Graphene-Supported Microwell Liquid Cells for In Situ Transmission Electron Microscopy.

Hutzler A, Fritsch B, Jank MPM, Branscheid R, Spiecker E, März M.

J Vis Exp. 2019 Jul 15;(149). doi: 10.3791/59751.

PMID:
31355798
7.

A CRISPR Activation Screen Identifies Genes That Protect against Zika Virus Infection.

Dukhovny A, Lamkiewicz K, Chen Q, Fricke M, Jabrane-Ferrat N, Marz M, Jung JU, Sklan EH.

J Virol. 2019 Jul 30;93(16). pii: e00211-19. doi: 10.1128/JVI.00211-19. Print 2019 Aug 15.

PMID:
31142663
8.

Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters.

Kallies R, Hölzer M, Brizola Toscan R, Nunes da Rocha U, Anders J, Marz M, Chatzinotas A.

Viruses. 2019 May 28;11(6). pii: E484. doi: 10.3390/v11060484.

9.

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis.

Peter S, Hölzer M, Lamkiewicz K, di Fenizio PS, Al Hwaeer H, Marz M, Schuster S, Dittrich P, Ibrahim B.

Viruses. 2019 May 16;11(5). pii: E449. doi: 10.3390/v11050449.

10.

De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.

Hölzer M, Marz M.

Gigascience. 2019 May 1;8(5). pii: giz039. doi: 10.1093/gigascience/giz039.

11.

The Third Annual Meeting of the European Virus Bioinformatics Center.

Hufsky F, Ibrahim B, Modha S, Clokie MRJ, Deinhardt-Emmer S, Dutilh BE, Lycett S, Simmonds P, Thiel V, Abroi A, Adriaenssens EM, Escalera-Zamudio M, Kelly JN, Lamkiewicz K, Lu L, Susat J, Sicheritz T, Robertson DL, Marz M.

Viruses. 2019 May 5;11(5). pii: E420. doi: 10.3390/v11050420.

12.

Erratum for Wegner et al., "Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon".

Wegner CE, Gaspar M, Geesink P, Herrmann M, Marz M, Küsel K.

Appl Environ Microbiol. 2019 Apr 18;85(9). pii: e00502-19. doi: 10.1128/AEM.00502-19. Print 2019 May 1. No abstract available.

13.

Optimized cultivation of porcine choroid plexus epithelial cells, a blood-cerebrospinal fluid barrier model, for studying granulocyte transmigration.

Lauer AN, März M, Meyer S, Meurer M, de Buhr N, Borkowski J, Weiß C, Schroten H, Schwerk C.

Lab Invest. 2019 Jul;99(8):1245-1255. doi: 10.1038/s41374-019-0250-9. Epub 2019 Apr 17.

PMID:
30996296
14.

Regulation of WNT5A and WNT11 during MSC in vitro chondrogenesis: WNT inhibition lowers BMP and hedgehog activity, and reduces hypertrophy.

Diederichs S, Tonnier V, März M, Dreher SI, Geisbüsch A, Richter W.

Cell Mol Life Sci. 2019 Oct;76(19):3875-3889. doi: 10.1007/s00018-019-03099-0. Epub 2019 Apr 12.

PMID:
30980110
15.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling.

Gerresheim GK, Bathke J, Michel AM, Andreev DE, Shalamova LA, Rossbach O, Hu P, Glebe D, Fricke M, Marz M, Goesmann A, Kiniry SJ, Baranov PV, Shatsky IN, Niepmann M.

Int J Mol Sci. 2019 Mar 15;20(6). pii: E1321. doi: 10.3390/ijms20061321.

16.

Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon.

Wegner CE, Gaspar M, Geesink P, Herrmann M, Marz M, Küsel K.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02346-18. doi: 10.1128/AEM.02346-18. Print 2019 Mar 1. Erratum in: Appl Environ Microbiol. 2019 Apr 18;85(9):.

17.

Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation.

Chen Z, Amro EM, Becker F, Hölzer M, Rasa SMM, Njeru SN, Han B, Di Sanzo S, Chen Y, Tang D, Tao S, Haenold R, Groth M, Romanov VS, Kirkpatrick JM, Kraus JM, Kestler HA, Marz M, Ori A, Neri F, Morita Y, Rudolph KL.

J Exp Med. 2019 Jan 7;216(1):152-175. doi: 10.1084/jem.20181505. Epub 2018 Dec 7.

18.

Shearlet-based compressed sensing for fast 3D cardiac MR imaging using iterative reweighting.

Ma J, März M, Funk S, Schulz-Menger J, Kutyniok G, Schaeffter T, Kolbitsch C.

Phys Med Biol. 2018 Nov 22;63(23):235004. doi: 10.1088/1361-6560/aaea04.

PMID:
30465546
19.

SilentMutations (SIM): A tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs.

Desirò D, Hölzer M, Ibrahim B, Marz M.

Virus Res. 2019 Jan 15;260:135-141. doi: 10.1016/j.virusres.2018.11.005. Epub 2018 Nov 12.

PMID:
30439394
20.

Epitaxial growth of C60 on highly oriented pyrolytic graphite surfaces studied at low temperatures.

Seydel E, Hoffmann-Vogel R, Marz M.

Nanotechnology. 2019 Jan 11;30(2):025703. doi: 10.1088/1361-6528/aae7ed. Epub 2018 Nov 1.

PMID:
30382026
21.

Azodicarboxylate-free esterification with triphenylphosphine mediated by flavin and visible light: method development and stereoselectivity control.

März M, Kohout M, Neveselý T, Chudoba J, Prukała D, Niziński S, Sikorski M, Burdziński G, Cibulka R.

Org Biomol Chem. 2018 Sep 19;16(36):6809-6817. doi: 10.1039/c8ob01822g.

PMID:
30203820
22.

Global importance of RNA secondary structures in protein-coding sequences.

Fricke M, Gerst R, Ibrahim B, Niepmann M, Marz M.

Bioinformatics. 2019 Feb 15;35(4):579-583. doi: 10.1093/bioinformatics/bty678.

PMID:
30101307
23.

Pediatric acute lymphoblastic leukemia-Conquering the CNS across the choroid plexus.

März M, Meyer S, Erb U, Georgikou C, Horstmann MA, Hetjens S, Weiß C, Fallier-Becker P, Vandenhaute E, Ishikawa H, Schroten H, Dürken M, Karremann M.

Leuk Res. 2018 Aug;71:47-54. doi: 10.1016/j.leukres.2018.07.001. Epub 2018 Jul 8.

PMID:
30005184
24.

Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.

Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, Zwart MP, Schönhuth A, Dutilh BE, Marz M.

Viruses. 2018 May 14;10(5). pii: E256. doi: 10.3390/v10050256.

25.

A new era of virus bioinformatics.

Ibrahim B, McMahon DP, Hufsky F, Beer M, Deng L, Mercier PL, Palmarini M, Thiel V, Marz M.

Virus Res. 2018 Jun 2;251:86-90. doi: 10.1016/j.virusres.2018.05.009. Epub 2018 May 8. Review.

PMID:
29751021
26.

Virologists-Heroes need weapons.

Hufsky F, Ibrahim B, Beer M, Deng L, Mercier PL, McMahon DP, Palmarini M, Thiel V, Marz M.

PLoS Pathog. 2018 Feb 8;14(2):e1006771. doi: 10.1371/journal.ppat.1006771. eCollection 2018 Feb. No abstract available.

27.

Multiple Roots of Fruiting Body Formation in Amoebozoa.

Hillmann F, Forbes G, Novohradská S, Ferling I, Riege K, Groth M, Westermann M, Marz M, Spaller T, Winckler T, Schaap P, Glöckner G.

Genome Biol Evol. 2018 Feb 1;10(2):591-606. doi: 10.1093/gbe/evy011.

28.

Effects of allelic variations in the human myxovirus resistance protein A on its antiviral activity.

Graf L, Dick A, Sendker F, Barth E, Marz M, Daumke O, Kochs G.

J Biol Chem. 2018 Mar 2;293(9):3056-3072. doi: 10.1074/jbc.M117.812784. Epub 2018 Jan 12.

29.

Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions.

Madhugiri R, Karl N, Petersen D, Lamkiewicz K, Fricke M, Wend U, Scheuer R, Marz M, Ziebuhr J.

Virology. 2018 Apr;517:44-55. doi: 10.1016/j.virol.2017.11.025. Epub 2017 Dec 6.

30.

Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".

Hölzer M, Marz M.

Adv Virus Res. 2017;99:233-257. doi: 10.1016/bs.aivir.2017.08.004. Epub 2017 Sep 28.

PMID:
29029728
31.

A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri.

Baumgart M, Barth E, Savino A, Groth M, Koch P, Petzold A, Arisi I, Platzer M, Marz M, Cellerino A.

BMC Genomics. 2017 Sep 5;18(1):693. doi: 10.1186/s12864-017-3951-8.

32.

Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany.

Möbius P, Nordsiek G, Hölzer M, Jarek M, Marz M, Köhler H.

Genome Announc. 2017 Aug 24;5(34). pii: e00870-17. doi: 10.1128/genomeA.00870-17.

33.

Near-equilibrium measurement of quantum size effects using Kelvin probe force microscopy.

Späth T, Popp M, Pérez León C, Marz M, Hoffmann-Vogel R.

Nanoscale. 2017 Jun 14;9(23):7868-7874. doi: 10.1039/c7nr01874f.

PMID:
28555693
34.

Evolution and Antiviral Specificities of Interferon-Induced Mx Proteins of Bats against Ebola, Influenza, and Other RNA Viruses.

Fuchs J, Hölzer M, Schilling M, Patzina C, Schoen A, Hoenen T, Zimmer G, Marz M, Weber F, Müller MA, Kochs G.

J Virol. 2017 Jul 12;91(15). pii: e00361-17. doi: 10.1128/JVI.00361-17. Print 2017 Aug 1.

35.

Mutational landscape reflects the biological continuum of plasma cell dyscrasias.

Rossi A, Voigtlaender M, Janjetovic S, Thiele B, Alawi M, März M, Brandt A, Hansen T, Radloff J, Schön G, Hegenbart U, Schönland S, Langer C, Bokemeyer C, Binder M.

Blood Cancer J. 2017 Feb 24;7(2):e537. doi: 10.1038/bcj.2017.19.

36.

Monitoring multiple myeloma by next-generation sequencing of V(D)J rearrangements from circulating myeloma cells and cell-free myeloma DNA.

Oberle A, Brandt A, Voigtlaender M, Thiele B, Radloff J, Schulenkorf A, Alawi M, Akyüz N, März M, Ford CT, Krohn-Grimberghe A, Binder M.

Haematologica. 2017 Jun;102(6):1105-1111. doi: 10.3324/haematol.2016.161414. Epub 2017 Feb 9.

37.

Photocatalytic esterification under Mitsunobu reaction conditions mediated by flavin and visible light.

März M, Chudoba J, Kohout M, Cibulka R.

Org Biomol Chem. 2017 Mar 1;15(9):1970-1975. doi: 10.1039/c6ob02770a.

PMID:
28182181
38.

Integrins are required for tissue organization and restriction of neurogenesis in regenerating planarians.

Seebeck F, März M, Meyer AW, Reuter H, Vogg MC, Stehling M, Mildner K, Zeuschner D, Rabert F, Bartscherer K.

Development. 2017 Mar 1;144(5):795-807. doi: 10.1242/dev.139774. Epub 2017 Jan 30.

39.

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.

Riege K, Hölzer M, Klassert TE, Barth E, Bräuer J, Collatz M, Hufsky F, Mostajo N, Stock M, Vogel B, Slevogt H, Marz M.

Sci Rep. 2017 Jan 17;7:40598. doi: 10.1038/srep40598.

40.

Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection.

Klassert TE, Bräuer J, Hölzer M, Stock M, Riege K, Zubiría-Barrera C, Müller MM, Rummler S, Skerka C, Marz M, Slevogt H.

Sci Rep. 2017 Jan 17;7:40599. doi: 10.1038/srep40599.

41.

Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2017 Jan 11;7:39421. doi: 10.1038/srep39421. No abstract available.

42.

Shame in Medical Education: A Randomized Study of the Acquisition of Intimate Examination Skills and Its Effect on Subsequent Performance.

Hautz WE, Schröder T, Dannenberg KA, März M, Hölzer H, Ahlers O, Thomas A.

Teach Learn Med. 2017 Apr-Jun;29(2):196-206. doi: 10.1080/10401334.2016.1254636. Epub 2017 Jan 4.

PMID:
28051893
43.

Structure and local charging of electromigrated Au nanocontacts.

Arnold D, Marz M, Schneider S, Hoffmann-Vogel R.

Nanotechnology. 2017 Feb 3;28(5):055206. doi: 10.1088/1361-6528/28/5/055206. Epub 2016 Dec 29.

PMID:
28032610
44.

Correction: Gene Expansion Shapes Genome Architecture in the Human Pathogen Lichtheimia corymbifera: An Evolutionary Genomics Analysis in the Ancient Terrestrial Mucorales (Mucoromycotina).

Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K.

PLoS Genet. 2016 Dec 5;12(12):e1006491. doi: 10.1371/journal.pgen.1006491. eCollection 2016 Dec.

45.

Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer.

Starke R, Müller M, Gaspar M, Marz M, Küsel K, Totsche KU, von Bergen M, Jehmlich N.

J Proteomics. 2017 Jan 30;152:153-160. doi: 10.1016/j.jprot.2016.11.003. Epub 2016 Nov 10.

PMID:
27838466
46.

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.

Hölzer M, Krähling V, Amman F, Barth E, Bernhart SH, Carmelo VA, Collatz M, Doose G, Eggenhofer F, Ewald J, Fallmann J, Feldhahn LM, Fricke M, Gebauer J, Gruber AJ, Hufsky F, Indrischek H, Kanton S, Linde J, Mostajo N, Ochsenreiter R, Riege K, Rivarola-Duarte L, Sahyoun AH, Saunders SJ, Seemann SE, Tanzer A, Vogel B, Wehner S, Wolfinger MT, Backofen R, Gorodkin J, Grosse I, Hofacker I, Hoffmann S, Kaleta C, Stadler PF, Becker S, Marz M.

Sci Rep. 2016 Oct 7;6:34589. doi: 10.1038/srep34589. Erratum in: Sci Rep. 2017 Jan 11;7:39421.

47.

Coronavirus cis-Acting RNA Elements.

Madhugiri R, Fricke M, Marz M, Ziebuhr J.

Adv Virus Res. 2016;96:127-163. doi: 10.1016/bs.aivir.2016.08.007. Epub 2016 Sep 6. Review.

PMID:
27712622
48.

Finding approximate gene clusters with Gecko 3.

Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S.

Nucleic Acids Res. 2016 Nov 16;44(20):9600-9610. Epub 2016 Sep 26.

49.

microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3' untranslated region: function in replication and influence of RNA secondary structure.

Gerresheim GK, Dünnes N, Nieder-Röhrmann A, Shalamova LA, Fricke M, Hofacker I, Höner Zu Siederdissen C, Marz M, Niepmann M.

Cell Mol Life Sci. 2017 Feb;74(4):747-760. doi: 10.1007/s00018-016-2377-9. Epub 2016 Sep 27.

PMID:
27677491
50.

Corrigendum: Conserved RNA secondary structures and long-range interactions in hepatitis C viruses.

Fricke M, Dünnes N, Zayas M, Bartenschlager R, Niepmann M, Marz M.

RNA. 2016 Oct;22(10):1640.1. doi: 10.1261/rna.058123.116. No abstract available.

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