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Items: 24

1.

Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor.

Boussardon C, Martin-Magniette ML, Godin B, Benamar A, Vittrant B, Citerne S, Mary-Huard T, Macherel D, Rajjou L, Budar F.

Front Plant Sci. 2019 Feb 5;10:32. doi: 10.3389/fpls.2019.00032. eCollection 2019.

2.

Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel.

Rio S, Mary-Huard T, Moreau L, Charcosset A.

Theor Appl Genet. 2019 Jan;132(1):81-96. doi: 10.1007/s00122-018-3196-1. Epub 2018 Oct 4.

PMID:
30288553
3.

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

Darracq A, Vitte C, Nicolas S, Duarte J, Pichon JP, Mary-Huard T, Chevalier C, Bérard A, Le Paslier MC, Rogowsky P, Charcosset A, Joets J.

BMC Genomics. 2018 Feb 5;19(1):119. doi: 10.1186/s12864-018-4490-7.

4.

SegCorr a statistical procedure for the detection of genomic regions of correlated expression.

Delatola EI, Lebarbier E, Mary-Huard T, Radvanyi F, Robin S, Wong J.

BMC Bioinformatics. 2017 Jul 11;18(1):333. doi: 10.1186/s12859-017-1742-5.

5.

Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

Brandenburg JT, Mary-Huard T, Rigaill G, Hearne SJ, Corti H, Joets J, Vitte C, Charcosset A, Nicolas SD, Tenaillon MI.

PLoS Genet. 2017 Mar 16;13(3):e1006666. doi: 10.1371/journal.pgen.1006666. eCollection 2017 Mar.

6.

Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs.

Laporte F, Charcosset A, Mary-Huard T.

Biometrics. 2017 Sep;73(3):885-894. doi: 10.1111/biom.12634. Epub 2017 Jan 12.

PMID:
28084017
7.

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents.

Larièpe A, Moreau L, Laborde J, Bauland C, Mezmouk S, Décousset L, Mary-Huard T, Fiévet JB, Gallais A, Dubreuil P, Charcosset A.

Theor Appl Genet. 2017 Feb;130(2):403-417. doi: 10.1007/s00122-016-2822-z. Epub 2016 Dec 2.

PMID:
27913832
8.

Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field.

Roux F, Mary-Huard T, Barillot E, Wenes E, Botran L, Durand S, Villoutreix R, Martin-Magniette ML, Camilleri C, Budar F.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3687-92. doi: 10.1073/pnas.1520687113. Epub 2016 Mar 15.

9.

Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures.

Friggens NC, Duvaux-Ponter C, Etienne MP, Mary-Huard T, Schmidely P.

J Dairy Sci. 2016 Apr;99(4):2704-2718. doi: 10.3168/jds.2015-10162. Epub 2016 Jan 29.

10.

High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age.

Desclée de Maredsous C, Oozeer R, Barbillon P, Mary-Huard T, Delteil C, Blachier F, Tomé D, van der Beek EM, Davila AM.

J Nutr. 2016 Jan;146(1):21-9. doi: 10.3945/jn.115.216465. Epub 2015 Dec 16.

PMID:
26674762
11.

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.

Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1010-7. doi: 10.1093/nar/gku1155. Epub 2014 Nov 11.

12.

Two-dimensional segmentation for analyzing Hi-C data.

Lévy-Leduc C, Delattre M, Mary-Huard T, Robin S.

Bioinformatics. 2014 Sep 1;30(17):i386-92. doi: 10.1093/bioinformatics/btu443.

13.

Recovering power in association mapping panels with variable levels of linkage disequilibrium.

Rincent R, Moreau L, Monod H, Kuhn E, Melchinger AE, Malvar RA, Moreno-Gonzalez J, Nicolas S, Madur D, Combes V, Dumas F, Altmann T, Brunel D, Ouzunova M, Flament P, Dubreuil P, Charcosset A, Mary-Huard T.

Genetics. 2014 May;197(1):375-87. doi: 10.1534/genetics.113.159731. Epub 2014 Feb 14.

14.

Variation of gene expression associated with colonisation of an anthropized environment: comparison between African and European populations of Drosophila simulans.

Wurmser F, Mary-Huard T, Daudin JJ, Joly D, Montchamp-Moreau C.

PLoS One. 2013 Nov 18;8(11):e79750. doi: 10.1371/journal.pone.0079750. eCollection 2013.

15.

MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.

Bérard C, Seifert M, Mary-Huard T, Martin-Magniette ML.

BMC Bioinformatics. 2013 Sep 9;14:271. doi: 10.1186/1471-2105-14-271.

16.

Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse.

Leroy G, Mary-Huard T, Verrier E, Danvy S, Charvolin E, Danchin-Burge C.

Genet Sel Evol. 2013 Jan 2;45:1. doi: 10.1186/1297-9686-45-1.

17.

ExactDAS: an exact test procedure for the detection of differential alternative splicing in microarray experiments.

Mary-Huard T, Jaffrezic F, Robin S.

Stat Appl Genet Mol Biol. 2012 Nov 6;11(5). pii: /j/sagmb.2012.11.issue-5/1544-6115.1814/1544-6115.1814.xml. doi: 10.1515/1544-6115.1814.

PMID:
23152425
18.

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.

19.

Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids.

Wurmser F, Ogereau D, Mary-Huard T, Loriod B, Joly D, Montchamp-Moreau C.

Genetica. 2011 Apr;139(4):465-77. doi: 10.1007/s10709-011-9566-0. Epub 2011 Mar 19.

PMID:
21424276
20.

Tailored aggregation for classification.

Mary-Huard T, Robin S.

IEEE Trans Pattern Anal Mach Intell. 2009 Nov;31(11):2098-105. doi: 10.1109/TPAMI.2009.55.

PMID:
19762936
21.

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis.

Martin-Magniette ML, Mary-Huard T, Bérard C, Robin S.

Bioinformatics. 2008 Aug 15;24(16):i181-6. doi: 10.1093/bioinformatics/btn280.

PMID:
18689822
22.

Statistical methodology for the analysis of dye-switch microarray experiments.

Mary-Huard T, Aubert J, Mansouri-Attia N, Sandra O, Daudin JJ.

BMC Bioinformatics. 2008 Feb 13;9:98. doi: 10.1186/1471-2105-9-98.

23.

Biases induced by pooling samples in microarray experiments.

Mary-Huard T, Daudin JJ, Baccini M, Biggeri A, Bar-Hen A.

Bioinformatics. 2007 Jul 1;23(13):i313-8.

PMID:
17646312
24.

Spotting effect in microarray experiments.

Mary-Huard T, Daudin JJ, Robin S, Bitton F, Cabannes E, Hilson P.

BMC Bioinformatics. 2004 May 19;5:63.

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