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Items: 31

1.

Measuring Tumor Mutational Burden (TMB) in Plasma from mCRPC Patients Using Two Commercial NGS Assays.

Qiu P, Poehlein CH, Marton MJ, Laterza OF, Levitan D.

Sci Rep. 2019 Jan 14;9(1):114. doi: 10.1038/s41598-018-37128-y.

2.
3.

Data Interoperability of Whole Exome Sequencing (WES) Based Mutational Burden Estimates from Different Laboratories.

Qiu P, Pang L, Arreaza G, Maguire M, Chang KC, Marton MJ, Levitan D.

Int J Mol Sci. 2016 Apr 29;17(5). pii: E651. doi: 10.3390/ijms17050651.

4.

Analytical Validation of AmpliChip p53 Research Test for Archival Human Ovarian FFPE Sections.

Marton MJ, McNamara AR, Nikoloff DM, Nakao A, Cheng J.

PLoS One. 2015 Jun 30;10(6):e0131497. doi: 10.1371/journal.pone.0131497. eCollection 2015.

5.

HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma.

Qiu P, Stevens R, Wei B, Lahser F, Howe AY, Klappenbach JA, Marton MJ.

PLoS One. 2015 Apr 1;10(4):e0122082. doi: 10.1371/journal.pone.0122082. eCollection 2015.

6.

Past, current and future approaches to querying MAPK pathway activation: status and clinical implications.

Chang KC, Marton MJ.

Per Med. 2014 Nov;11(8):745-760. doi: 10.2217/pme.14.52.

7.

Navigating the rapids: the development of regulated next-generation sequencing-based clinical trial assays and companion diagnostics.

Pant S, Weiner R, Marton MJ.

Front Oncol. 2014 Apr 17;4:78. doi: 10.3389/fonc.2014.00078. eCollection 2014. Review.

8.

Gene expression analysis in serial liver fine needle aspirates.

Lejnine S, Marton MJ, Wang IM, Howell BJ, Webber AL, Maxwell JW, Shire N, Malkov V, Lunceford J, Zeremski M, Sun A, Ruddy M, Talal AH.

J Viral Hepat. 2015 Jan;22(1):64-76. doi: 10.1111/jvh.12213. Epub 2014 Jan 29.

9.

Practical guidance for implementing predictive biomarkers into early phase clinical studies.

Marton MJ, Weiner R.

Biomed Res Int. 2013;2013:891391. doi: 10.1155/2013/891391. Epub 2013 Oct 22. Review.

10.

Development and validation of a clinical trial patient stratification assay that interrogates 27 mutation sites in MAPK pathway genes.

Chang KC, Galuska S, Weiner R, Marton MJ.

PLoS One. 2013 Aug 21;8(8):e72239. doi: 10.1371/journal.pone.0072239. eCollection 2013.

11.

High-throughput simultaneous analysis of RNA, protein, and lipid biomarkers in heterogeneous tissue samples.

Reiser V, Smith RC, Xue J, Kurtz MM, Liu R, Legrand C, He X, Yu X, Wong P, Hinchcliffe JS, Tanen MR, Lazar G, Zieba R, Ichetovkin M, Chen Z, O'Neill EA, Tanaka WK, Marton MJ, Liao J, Morris M, Hailman E, Tokiwa GY, Plump AS.

Clin Chem. 2011 Nov;57(11):1545-55. doi: 10.1373/clinchem.2010.157743. Epub 2011 Sep 13.

12.

cDNA targets improve whole blood gene expression profiling and enhance detection of pharmocodynamic biomarkers: a quantitative platform analysis.

Parrish ML, Wright C, Rivers Y, Argilla D, Collins H, Leeson B, Loboda A, Nebozhyn M, Marton MJ, Lejnine S.

J Transl Med. 2010 Sep 25;8:87. doi: 10.1186/1479-5876-8-87.

13.

Refined anatomical isolation of functional sleep circuits exhibits distinctive regional and circadian gene transcriptional profiles.

Winrow CJ, Tanis KQ, Rigby AM, Taylor RR, Serikawa K, McWhorter M, Tokiwa GY, Marton MJ, Stone DJ, Koblan KS, Renger JJ.

Brain Res. 2009 May 19;1271:1-17. doi: 10.1016/j.brainres.2009.02.083. Epub 2009 Mar 17.

PMID:
19302983
14.

Effects of atmospheric ozone on microarray data quality.

Fare TL, Coffey EM, Dai H, He YD, Kessler DA, Kilian KA, Koch JE, LeProust E, Marton MJ, Meyer MR, Stoughton RB, Tokiwa GY, Wang Y.

Anal Chem. 2003 Sep 1;75(17):4672-5.

PMID:
14632079
15.

Functional interactions between yeast translation eukaryotic elongation factor (eEF) 1A and eEF3.

Anand M, Chakraburtty K, Marton MJ, Hinnebusch AG, Kinzy TG.

J Biol Chem. 2003 Feb 28;278(9):6985-91. Epub 2002 Dec 18.

16.

A gene-expression signature as a predictor of survival in breast cancer.

van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, Parrish M, Atsma D, Witteveen A, Glas A, Delahaye L, van der Velde T, Bartelink H, Rodenhuis S, Rutgers ET, Friend SH, Bernards R.

N Engl J Med. 2002 Dec 19;347(25):1999-2009.

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Gene expression profiling predicts clinical outcome of breast cancer.

van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH.

Nature. 2002 Jan 31;415(6871):530-6.

PMID:
11823860
19.

Role of scaffolds in MAP kinase pathway specificity revealed by custom design of pathway-dedicated signaling proteins.

Harris K, Lamson RE, Nelson B, Hughes TR, Marton MJ, Roberts CJ, Boone C, Pryciak PM.

Curr Biol. 2001 Nov 27;11(23):1815-24.

20.

Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast.

Natarajan K, Meyer MR, Jackson BM, Slade D, Roberts C, Hinnebusch AG, Marton MJ.

Mol Cell Biol. 2001 Jul;21(13):4347-68.

21.

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.

Hughes TR, Mao M, Jones AR, Burchard J, Marton MJ, Shannon KW, Lefkowitz SM, Ziman M, Schelter JM, Meyer MR, Kobayashi S, Davis C, Dai H, He YD, Stephaniants SB, Cavet G, Walker WL, West A, Coffey E, Shoemaker DD, Stoughton R, Blanchard AP, Friend SH, Linsley PS.

Nat Biotechnol. 2001 Apr;19(4):342-7.

PMID:
11283592
22.

Experimental annotation of the human genome using microarray technology.

Shoemaker DD, Schadt EE, Armour CD, He YD, Garrett-Engele P, McDonagh PD, Loerch PM, Leonardson A, Lum PY, Cavet G, Wu LF, Altschuler SJ, Edwards S, King J, Tsang JS, Schimmack G, Schelter JM, Koch J, Ziman M, Marton MJ, Li B, Cundiff P, Ward T, Castle J, Krolewski M, Meyer MR, Mao M, Burchard J, Kidd MJ, Dai H, Phillips JW, Linsley PS, Stoughton R, Scherer S, Boguski MS.

Nature. 2001 Feb 15;409(6822):922-7.

PMID:
11237012
23.

Functional discovery via a compendium of expression profiles.

Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, Armour CD, Bennett HA, Coffey E, Dai H, He YD, Kidd MJ, King AM, Meyer MR, Slade D, Lum PY, Stepaniants SB, Shoemaker DD, Gachotte D, Chakraburtty K, Simon J, Bard M, Friend SH.

Cell. 2000 Jul 7;102(1):109-26.

24.

Widespread aneuploidy revealed by DNA microarray expression profiling.

Hughes TR, Roberts CJ, Dai H, Jones AR, Meyer MR, Slade D, Burchard J, Dow S, Ward TR, Kidd MJ, Friend SH, Marton MJ.

Nat Genet. 2000 Jul;25(3):333-7.

PMID:
10888885
25.

Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles.

Roberts CJ, Nelson B, Marton MJ, Stoughton R, Meyer MR, Bennett HA, He YD, Dai H, Walker WL, Hughes TR, Tyers M, Boone C, Friend SH.

Science. 2000 Feb 4;287(5454):873-80.

26.

Drug target validation and identification of secondary drug target effects using DNA microarrays.

Marton MJ, DeRisi JL, Bennett HA, Iyer VR, Meyer MR, Roberts CJ, Stoughton R, Burchard J, Slade D, Dai H, Bassett DE Jr, Hartwell LH, Brown PO, Friend SH.

Nat Med. 1998 Nov;4(11):1293-301.

PMID:
9809554
27.

Interaction between the retinoid X receptor and transcription factor IIB is ligand-dependent in vivo.

Leong GM, Wang KS, Marton MJ, Blanco JC, Wang IM, Rolfes RJ, Ozato K, Segars JH.

J Biol Chem. 1998 Jan 23;273(4):2296-305.

28.

Evidence that GCN1 and GCN20, translational regulators of GCN4, function on elongating ribosomes in activation of eIF2alpha kinase GCN2.

Marton MJ, Vazquez de Aldana CR, Qiu H, Chakraburtty K, Hinnebusch AG.

Mol Cell Biol. 1997 Aug;17(8):4474-89.

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