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Items: 12

1.

The genomic footprint of sexual conflict.

Sayadi A, Martinez Barrio A, Immonen E, Dainat J, Berger D, Tellgren-Roth C, Nystedt B, Arnqvist G.

Nat Ecol Evol. 2019 Dec;3(12):1725-1730. doi: 10.1038/s41559-019-1041-9. Epub 2019 Nov 18.

PMID:
31740847
2.

RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding.

Humble E, Dasmahapatra KK, Martinez-Barrio A, Gregório I, Forcada J, Polikeit AC, Goldsworthy SD, Goebel ME, Kalinowski J, Wolf JBW, Hoffman JI.

G3 (Bethesda). 2018 Jul 31;8(8):2709-2722. doi: 10.1534/g3.118.200171.

3.

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, Rafati N, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Martin M, Nystedt B, Liu X, Chen W, Liang X, Shi C, Fu Y, Ma K, Zhan X, Feng C, Gustafson U, Rubin CJ, Sällman Almén M, Blass M, Casini M, Folkvord A, Laikre L, Ryman N, Ming-Yuen Lee S, Xu X, Andersson L.

Elife. 2016 May 3;5. pii: e12081. doi: 10.7554/eLife.12081.

4.

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.

Humble E, Martinez-Barrio A, Forcada J, Trathan PN, Thorne MA, Hoffmann M, Wolf JB, Hoffman JI.

Mol Ecol Resour. 2016 Jul;16(4):909-21. doi: 10.1111/1755-0998.12502. Epub 2016 Jan 20.

PMID:
26683564
5.

Amelanism in the corn snake is associated with the insertion of an LTR-retrotransposon in the OCA2 gene.

Saenko SV, Lamichhaney S, Martinez Barrio A, Rafati N, Andersson L, Milinkovitch MC.

Sci Rep. 2015 Nov 24;5:17118. doi: 10.1038/srep17118.

6.

Evolution of Darwin's finches and their beaks revealed by genome sequencing.

Lamichhaney S, Berglund J, Almén MS, Maqbool K, Grabherr M, Martinez-Barrio A, Promerová M, Rubin CJ, Wang C, Zamani N, Grant BR, Grant PR, Webster MT, Andersson L.

Nature. 2015 Feb 19;518(7539):371-5. doi: 10.1038/nature14181. Epub 2015 Feb 11.

PMID:
25686609
7.

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Martinez Barrio A, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L.

Science. 2014 Aug 29;345(6200):1074-1079. doi: 10.1126/science.1253714.

8.

Strong signatures of selection in the domestic pig genome.

Rubin CJ, Megens HJ, Martinez Barrio A, Maqbool K, Sayyab S, Schwochow D, Wang C, Carlborg Ö, Jern P, Jørgensen CB, Archibald AL, Fredholm M, Groenen MA, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19529-36. doi: 10.1073/pnas.1217149109. Epub 2012 Nov 14.

9.

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring.

Lamichhaney S, Martinez Barrio A, Rafati N, Sundström G, Rubin CJ, Gilbert ER, Berglund J, Wetterbom A, Laikre L, Webster MT, Grabherr M, Ryman N, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19345-50. doi: 10.1073/pnas.1216128109. Epub 2012 Nov 7.

10.

The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage.

Wright D, Rubin CJ, Martinez Barrio A, Schütz K, Kerje S, Brändström H, Kindmark A, Jensen P, Andersson L.

Mol Ecol. 2010 Dec;19(23):5140-56. doi: 10.1111/j.1365-294X.2010.04882.x. Epub 2010 Oct 29.

PMID:
21040053
11.

Targeted resequencing and analysis of the Diamond-Blackfan anemia disease locus RPS19.

Martinez Barrio A, Eriksson O, Badhai J, Fröjmark AS, Bongcam-Rudloff E, Dahl N, Schuster J.

PLoS One. 2009 Jul 9;4(7):e6172. doi: 10.1371/journal.pone.0006172.

12.

EVALLER: a web server for in silico assessment of potential protein allergenicity.

Martinez Barrio A, Soeria-Atmadja D, Nistér A, Gustafsson MG, Hammerling U, Bongcam-Rudloff E.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W694-700. Epub 2007 May 30.

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