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Perspectives on the expansion of human precision oncology and genomic approaches to sea turtle fibropapillomatosis.

Duffy DJ, Martindale MQ.

Commun Biol. 2019 Feb 7;2:54. doi: 10.1038/s42003-019-0301-1. eCollection 2019.


"Dorsal-Ventral" Genes Are Part of an Ancient Axial Patterning System: Evidence from Trichoplax adhaerens (Placozoa).

DuBuc TQ, Ryan JF, Martindale MQ.

Mol Biol Evol. 2019 May 1;36(5):966-973. doi: 10.1093/molbev/msz025.


Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers.

Duffy DJ, Schnitzler C, Karpinski L, Thomas R, Whilde J, Eastman C, Yang C, Krstic A, Rollinson D, Zirkelbach B, Yetsko K, Burkhalter B, Martindale MQ.

Commun Biol. 2018 Jun 7;1:63. doi: 10.1038/s42003-018-0059-x. eCollection 2018.


CRISPR knockouts reveal an endogenous role for ancient neuropeptides in regulating developmental timing in a sea anemone.

Nakanishi N, Martindale MQ.

Elife. 2018 Sep 18;7. pii: e39742. doi: 10.7554/eLife.39742.


Integrating Embryonic Development and Evolutionary History to Characterize Tentacle-Specific Cell Types in a Ctenophore.

Babonis LS, DeBiasse MB, Francis WR, Christianson LM, Moss AG, Haddock SHD, Martindale MQ, Ryan JF.

Mol Biol Evol. 2018 Dec 1;35(12):2940-2956. doi: 10.1093/molbev/msy171.


Germ layer-specific regulation of cell polarity and adhesion gives insight into the evolution of mesoderm.

Salinas-Saavedra M, Rock AQ, Martindale MQ.

Elife. 2018 Jul 31;7. pii: e36740. doi: 10.7554/eLife.36740.


Hox and Wnt pattern the primary body axis of an anthozoan cnidarian before gastrulation.

DuBuc TQ, Stephenson TB, Rock AQ, Martindale MQ.

Nat Commun. 2018 May 22;9(1):2007. doi: 10.1038/s41467-018-04184-x.


Reengineering the primary body axis by ectopic cWnt signaling.

Wijesena N, Martindale MQ.

Curr Biol. 2018 Mar 5;28(5):R206-R207. doi: 10.1016/j.cub.2018.01.042.


Food availability drives plastic self-repair response in a basal metazoan- case study on the ctenophore Mnemiopsis leidyi A. Agassiz 1865.

Bading KT, Kaehlert S, Chi X, Jaspers C, Martindale MQ, Javidpour J.

Sci Rep. 2017 Nov 27;7(1):16419. doi: 10.1038/s41598-017-16346-w.


The maternal-zygotic transition and zygotic activation of the Mnemiopsis leidyi genome occurs within the first three cleavage cycles.

Davidson PL, Koch BJ, Schnitzler CE, Henry JQ, Martindale MQ, Baxevanis AD, Browne WE.

Mol Reprod Dev. 2017 Nov;84(11):1218-1229. doi: 10.1002/mrd.22926. Epub 2017 Nov 10.


PaxA, but not PaxC, is required for cnidocyte development in the sea anemone Nematostella vectensis.

Babonis LS, Martindale MQ.

Evodevo. 2017 Sep 4;8:14. doi: 10.1186/s13227-017-0077-7. eCollection 2017.


A bipolar role of the transcription factor ERG for cnidarian germ layer formation and apical domain patterning.

Amiel AR, Johnston H, Chock T, Dahlin P, Iglesias M, Layden M, Röttinger E, Martindale MQ.

Dev Biol. 2017 Oct 15;430(2):346-361. doi: 10.1016/j.ydbio.2017.08.015. Epub 2017 Aug 14.


The developmental basis for the recurrent evolution of deuterostomy and protostomy.

Martín-Durán JM, Passamaneck YJ, Martindale MQ, Hejnol A.

Nat Ecol Evol. 2016 Dec 5;1(1):5. doi: 10.1038/s41559-016-0005.


Cas9-mediated excision of Nematostella brachyury disrupts endoderm development, pharynx formation and oral-aboral patterning.

Servetnick MD, Steinworth B, Babonis LS, Simmons D, Salinas-Saavedra M, Martindale MQ.

Development. 2017 Aug 15;144(16):2951-2960. doi: 10.1242/dev.145839. Epub 2017 Jul 13.


Antagonistic BMP-cWNT signaling in the cnidarian Nematostella vectensis reveals insight into the evolution of mesoderm.

Wijesena N, Simmons DK, Martindale MQ.

Proc Natl Acad Sci U S A. 2017 Jul 11;114(28):E5608-E5615. doi: 10.1073/pnas.1701607114. Epub 2017 Jun 26.


Phylogenetic evidence for the modular evolution of metazoan signalling pathways.

Babonis LS, Martindale MQ.

Philos Trans R Soc Lond B Biol Sci. 2017 Feb 5;372(1713). pii: 20150477. Review.


Precision wildlife medicine: applications of the human-centred precision medicine revolution to species conservation.

Whilde J, Martindale MQ, Duffy DJ.

Glob Chang Biol. 2017 May;23(5):1792-1805. doi: 10.1111/gcb.13548. Epub 2016 Nov 21.


Developmental expression of "germline"- and "sex determination"-related genes in the ctenophore Mnemiopsis leidyi.

Reitzel AM, Pang K, Martindale MQ.

Evodevo. 2016 Aug 2;7:17. doi: 10.1186/s13227-016-0051-9. eCollection 2016.


MAPK signaling is necessary for neurogenesis in Nematostella vectensis.

Layden MJ, Johnston H, Amiel AR, Havrilak J, Steinworth B, Chock T, Röttinger E, Martindale MQ.

BMC Biol. 2016 Aug 1;14:61. doi: 10.1186/s12915-016-0282-1.


The onset of regenerative properties in ctenophores.

Martindale MQ.

Curr Opin Genet Dev. 2016 Oct;40:113-119. doi: 10.1016/j.gde.2016.06.017. Epub 2016 Jul 14. Review.


Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis.

Babonis LS, Martindale MQ, Ryan JF.

BMC Evol Biol. 2016 May 23;16(1):114. doi: 10.1186/s12862-016-0683-3.


The mid-developmental transition and the evolution of animal body plans.

Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I.

Nature. 2016 Mar 31;531(7596):637-641. doi: 10.1038/nature16994. Epub 2016 Feb 17.


Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development.

Botman D, Jansson F, Röttinger E, Martindale MQ, de Jong J, Kaandorp JA.

BMC Syst Biol. 2015 Sep 24;9:63. doi: 10.1186/s12918-015-0209-4.


Nmf9 Encodes a Highly Conserved Protein Important to Neurological Function in Mice and Flies.

Zhang S, Ross KD, Seidner GA, Gorman MR, Poon TH, Wang X, Keithley EM, Lee PN, Martindale MQ, Joiner WJ, Hamilton BA.

PLoS Genet. 2015 Jul 1;11(7):e1005344. doi: 10.1371/journal.pgen.1005344. eCollection 2015 Jul.


Par system components are asymmetrically localized in ectodermal epithelia, but not during early development in the sea anemone Nematostella vectensis.

Salinas-Saavedra M, Stephenson TQ, Dunn CW, Martindale MQ.

Evodevo. 2015 May 9;6:20. doi: 10.1186/s13227-015-0014-6. eCollection 2015.


Nodal signaling is required for mesodermal and ventral but not for dorsal fates in the indirect developing hemichordate, Ptychodera flava.

Röttinger E, DuBuc TQ, Amiel AR, Martindale MQ.

Biol Open. 2015 May 15;4(7):830-42. doi: 10.1242/bio.011809.


Mesodermal gene expression during the embryonic and larval development of the articulate brachiopod Terebratalia transversa.

Passamaneck YJ, Hejnol A, Martindale MQ.

Evodevo. 2015 Apr 11;6:10. doi: 10.1186/s13227-015-0004-8. eCollection 2015.


Non-canonical Notch signaling represents an ancestral mechanism to regulate neural differentiation.

Layden MJ, Martindale MQ.

Evodevo. 2014 Sep 19;5:30. doi: 10.1186/2041-9139-5-30. eCollection 2014.


Ether-à-go-go family voltage-gated K+ channels evolved in an ancestral metazoan and functionally diversified in a cnidarian-bilaterian ancestor.

Li X, Martinson AS, Layden MJ, Diatta FH, Sberna AP, Simmons DK, Martindale MQ, Jegla TJ.

J Exp Biol. 2015 Feb 15;218(Pt 4):526-36. doi: 10.1242/jeb.110080.


Major diversification of voltage-gated K+ channels occurred in ancestral parahoxozoans.

Li X, Liu H, Chu Luo J, Rhodes SA, Trigg LM, van Rossum DB, Anishkin A, Diatta FH, Sassic JK, Simmons DK, Kamel B, Medina M, Martindale MQ, Jegla T.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E1010-9. doi: 10.1073/pnas.1422941112. Epub 2015 Feb 17.


Current directions and future perspectives from the third Nematostella research conference.

Tarrant AM, Gilmore TD, Reitzel AM, Levy O, Technau U, Martindale MQ.

Zoology (Jena). 2015 Apr;118(2):135-40. doi: 10.1016/j.zool.2014.06.005. Epub 2014 Sep 28.


In vivo imaging of Nematostella vectensis embryogenesis and late development using fluorescent probes.

DuBuc TQ, Dattoli AA, Babonis LS, Salinas-Saavedra M, Röttinger E, Martindale MQ, Postma M.

BMC Cell Biol. 2014 Nov 30;15:44. doi: 10.1186/s12860-014-0044-2.


Developmental and light-entrained expression of melatonin and its relationship to the circadian clock in the sea anemone Nematostella vectensis.

Peres R, Reitzel AM, Passamaneck Y, Afeche SC, Cipolla-Neto J, Marques AC, Martindale MQ.

Evodevo. 2014 Aug 14;5:26. doi: 10.1186/2041-9139-5-26. eCollection 2014.


The cell's view of animal body-plan evolution.

Lyons DC, Martindale MQ, Srivastava M.

Integr Comp Biol. 2014 Oct;54(4):658-66. doi: 10.1093/icb/icu108. Epub 2014 Aug 8.


A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut.

Botman D, Röttinger E, Martindale MQ, de Jong J, Kaandorp JA.

PLoS One. 2014 Jul 30;9(7):e103341. doi: 10.1371/journal.pone.0103341. eCollection 2014.


Expression of multiple Sox genes through embryonic development in the ctenophore Mnemiopsis leidyi is spatially restricted to zones of cell proliferation.

Schnitzler CE, Simmons DK, Pang K, Martindale MQ, Baxevanis AD.

Evodevo. 2014 Apr 24;5:15. doi: 10.1186/2041-9139-5-15. eCollection 2014.


Old cell, new trick? Cnidocytes as a model for the evolution of novelty.

Babonis LS, Martindale MQ.

Integr Comp Biol. 2014 Oct;54(4):714-22. doi: 10.1093/icb/icu027. Epub 2014 Apr 25. Review.


Functional evolution of Erg potassium channel gating reveals an ancient origin for IKr.

Martinson AS, van Rossum DB, Diatta FH, Layden MJ, Rhodes SA, Martindale MQ, Jegla T.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5712-7. doi: 10.1073/pnas.1321716111. Epub 2014 Mar 31.


Initiating a regenerative response; cellular and molecular features of wound healing in the cnidarian Nematostella vectensis.

DuBuc TQ, Traylor-Knowles N, Martindale MQ.

BMC Biol. 2014 Mar 26;12:24. doi: 10.1186/1741-7007-12-24.


The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution.

Ryan JF, Pang K, Schnitzler CE, Nguyen AD, Moreland RT, Simmons DK, Koch BJ, Francis WR, Havlak P; NISC Comparative Sequencing Program, Smith SA, Putnam NH, Haddock SH, Dunn CW, Wolfsberg TG, Mullikin JC, Martindale MQ, Baxevanis AD.

Science. 2013 Dec 13;342(6164):1242592. doi: 10.1126/science.1242592.


The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.


Aryl hydrocarbon receptor (AHR) in the cnidarian Nematostella vectensis: comparative expression, protein interactions, and ligand binding.

Reitzel AM, Passamaneck YJ, Karchner SI, Franks DG, Martindale MQ, Tarrant AM, Hahn ME.

Dev Genes Evol. 2014 Feb;224(1):13-24. doi: 10.1007/s00427-013-0458-4. Epub 2013 Nov 29.


Evidence for a phototransduction cascade in an early brachiopod embryo.

Passamaneck YJ, Martindale MQ.

Integr Comp Biol. 2013 Jul;53(1):17-26. doi: 10.1093/icb/ict037. Epub 2013 Apr 29.


Microinjection of mRNA or morpholinos for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis.

Layden MJ, Röttinger E, Wolenski FS, Gilmore TD, Martindale MQ.

Nat Protoc. 2013 May;8(5):924-34. doi: 10.1038/nprot.2013.009. Epub 2013 Apr 11.


Characterizing the spatiotemporal expression of RNAs and proteins in the starlet sea anemone, Nematostella vectensis.

Wolenski FS, Layden MJ, Martindale MQ, Gilmore TD, Finnerty JR.

Nat Protoc. 2013 May;8(5):900-15. doi: 10.1038/nprot.2013.014. Epub 2013 Apr 11.


Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics.

Reitzel AM, Herrera S, Layden MJ, Martindale MQ, Shank TM.

Mol Ecol. 2013 Jun;22(11):2953-70. doi: 10.1111/mec.12228. Epub 2013 Mar 8.


Cephalopod genomics: A plan of strategies and organization.

Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Di Cristo C, Dilkes BP, Edsinger-Gonzales E, Freeman RM Jr, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, Nödl MT, Nyholm SV, Ogura A, Pungor JR, Rosenthal JJ, Schwarz EM, Shigeno S, Strugnell JM, Wollesen T, Zhang G, Ragsdale CW.

Stand Genomic Sci. 2012 Oct 10;7(1):175-88. doi: 10.4056/sigs.3136559. Epub 2012 Sep 26.


Evolution of development: the details are in the entrails.

Martindale MQ.

Curr Biol. 2013 Jan 7;23(1):R25-8. doi: 10.1016/j.cub.2012.11.023.

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