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Items: 46


Transcriptome dynamics of the Myxococcus xanthus multicellular developmental program.

Muñoz-Dorado J, Moraleda-Muñoz A, Marcos-Torres FJ, Contreras-Moreno FJ, Martin-Cuadrado AB, Schrader JM, Higgs PI, Pérez J.

Elife. 2019 Oct 14;8. pii: e50374. doi: 10.7554/eLife.50374.


Prokaryotic and viral community of the sulfate-rich crust from Peñahueca ephemeral lake, an astrobiology analogue.

Martin-Cuadrado AB, Senel E, Martínez-García M, Cifuentes A, Santos F, Almansa C, Moreno-Paz M, Blanco Y, García-Villadangos M, Del Cura MÁG, Sanz-Montero ME, Rodríguez-Aranda JP, Rosselló-Móra R, Antón J, Parro V.

Environ Microbiol. 2019 Oct;21(10):3577-3600. doi: 10.1111/1462-2920.14680. Epub 2019 Jun 10.


Recovering microbial genomes from metagenomes in hypersaline environments: The Good, the Bad and the Ugly.

Ramos-Barbero MD, Martin-Cuadrado AB, Viver T, Santos F, Martinez-Garcia M, Antón J.

Syst Appl Microbiol. 2019 Jan;42(1):30-40. doi: 10.1016/j.syapm.2018.11.001. Epub 2018 Nov 15.


Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs.

Cabello-Yeves PJ, Haro-Moreno JM, Martin-Cuadrado AB, Ghai R, Picazo A, Camacho A, Rodriguez-Valera F.

Front Microbiol. 2017 Jun 21;8:1151. doi: 10.3389/fmicb.2017.01151. eCollection 2017.


Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface.

Bolhuis H, Martín-Cuadrado AB, Rosselli R, Pašić L, Rodriguez-Valera F.

BMC Genomics. 2017 Jul 3;18(1):510. doi: 10.1186/s12864-017-3892-2.


New insights into marine group III Euryarchaeota, from dark to light.

Haro-Moreno JM, Rodriguez-Valera F, López-García P, Moreira D, Martin-Cuadrado AB.

ISME J. 2017 May;11(5):1102-1117. doi: 10.1038/ismej.2016.188. Epub 2017 Jan 13.


Flexible genomic islands as drivers of genome evolution.

Rodriguez-Valera F, Martin-Cuadrado AB, López-Pérez M.

Curr Opin Microbiol. 2016 Jun;31:154-160. doi: 10.1016/j.mib.2016.03.014. Epub 2016 Apr 14. Review.


"Deciphering Archaeal Communities" Omics Tools in the Study of Archaeal Communities.

Pašić L, Martin-Cuadrado AB, López-García P.

Methods Mol Biol. 2016;1399:1-28. doi: 10.1007/978-1-4939-3369-3_1.


Marine Group II Archaea, potentially important players in the global ocean carbon cycle.

Zhang CL, Xie W, Martin-Cuadrado AB, Rodriguez-Valera F.

Front Microbiol. 2015 Oct 13;6:1108. doi: 10.3389/fmicb.2015.01108. eCollection 2015. Review.


Draft Genome Sequence of Alteromonas macleodii Strain MIT1002, Isolated from an Enrichment Culture of the Marine Cyanobacterium Prochlorococcus.

Biller SJ, Coe A, Martin-Cuadrado AB, Chisholm SW.

Genome Announc. 2015 Aug 27;3(4). pii: e00967-15. doi: 10.1128/genomeA.00967-15.


Diversity of the cell-wall associated genomic island of the archaeon Haloquadratum walsbyi.

Martin-Cuadrado AB, Pašić L, Rodriguez-Valera F.

BMC Genomics. 2015 Aug 13;16:603. doi: 10.1186/s12864-015-1794-8.


A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum.

Martin-Cuadrado AB, Garcia-Heredia I, Moltó AG, López-Úbeda R, Kimes N, López-García P, Moreira D, Rodriguez-Valera F.

ISME J. 2015 Jul;9(7):1619-34. doi: 10.1038/ismej.2014.249. Epub 2014 Dec 23.


Homologous recombination is involved in the diversity of replacement flexible genomic islands in aquatic prokaryotes.

López-Pérez M, Martin-Cuadrado AB, Rodriguez-Valera F.

Front Genet. 2014 May 22;5:147. doi: 10.3389/fgene.2014.00147. eCollection 2014.


Genomes of two new ammonia-oxidizing archaea enriched from deep marine sediments.

Park SJ, Ghai R, Martín-Cuadrado AB, Rodríguez-Valera F, Chung WH, Kwon K, Lee JH, Madsen EL, Rhee SK.

PLoS One. 2014 May 5;9(5):e96449. doi: 10.1371/journal.pone.0096449. eCollection 2014.


Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics.

Fernández AB, Ghai R, Martin-Cuadrado AB, Sánchez-Porro C, Rodriguez-Valera F, Ventosa A.

FEMS Microbiol Ecol. 2014 Jun;88(3):623-35. doi: 10.1111/1574-6941.12329. Epub 2014 Apr 28.


Metagenome sequencing of prokaryotic microbiota from two hypersaline ponds of a marine saltern in santa pola, Spain.

Fernandez AB, Ghai R, Martin-Cuadrado AB, Sanchez-Porro C, Rodriguez-Valera F, Ventosa A.

Genome Announc. 2013 Nov 14;1(6). pii: e00933-13. doi: 10.1128/genomeA.00933-13.


Novel group of podovirus infecting the marine bacterium Alteromonas macleodii.

Garcia-Heredia I, Rodriguez-Valera F, Martin-Cuadrado AB.

Bacteriophage. 2013 Apr 1;3(2):e24766.


Intra- and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains.

López-Pérez M, Gonzaga A, Martin-Cuadrado AB, López-García P, Rodriguez-Valera F, Kimes NE.

Microb Ecol. 2013 Apr;65(3):720-30. doi: 10.1007/s00248-012-0153-4. Epub 2012 Dec 28.


Polyclonality of concurrent natural populations of Alteromonas macleodii.

Gonzaga A, Martin-Cuadrado AB, López-Pérez M, Megumi Mizuno C, García-Heredia I, Kimes NE, Lopez-García P, Moreira D, Ussery D, Zaballos M, Ghai R, Rodriguez-Valera F.

Genome Biol Evol. 2012;4(12):1360-74. doi: 10.1093/gbe/evs112.


Complete genome sequence of the copiotrophic marine bacterium Alteromonas macleodii strain ATCC 27126T.

Gonzaga A, López-Pérez M, Martin-Cuadrado AB, Ghai R, Rodriguez-Valera F.

J Bacteriol. 2012 Dec;194(24):6998. doi: 10.1128/JB.01565-12.


Draft genome sequence of an ammonia-oxidizing archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle.

Park SJ, Kim JG, Jung MY, Kim SJ, Cha IT, Ghai R, Martín-Cuadrado AB, Rodríguez-Valera F, Rhee SK.

J Bacteriol. 2012 Dec;194(24):6948-9. doi: 10.1128/JB.01869-12.


Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids.

Mizuno CM, Rodriguez-Valera F, Garcia-Heredia I, Martin-Cuadrado AB, Ghai R.

Appl Environ Microbiol. 2013 Jan;79(2):688-95. doi: 10.1128/AEM.02742-12. Epub 2012 Nov 16.


Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph.

López-Pérez M, Gonzaga A, Martin-Cuadrado AB, Onyshchenko O, Ghavidel A, Ghai R, Rodriguez-Valera F.

Sci Rep. 2012;2:696. Epub 2012 Sep 26.


Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.

Park SJ, Ghai R, Martín-Cuadrado AB, Rodríguez-Valera F, Jung MY, Kim JG, Rhee SK.

J Bacteriol. 2012 Aug;194(15):4128-9. doi: 10.1128/JB.00741-12.


Determination of whether quorum quenching is a common activity in marine bacteria by analysis of cultivable bacteria and metagenomic sequences.

Romero M, Martin-Cuadrado AB, Otero A.

Appl Environ Microbiol. 2012 Sep;78(17):6345-8. doi: 10.1128/AEM.01266-12. Epub 2012 Jun 15.


Reconstructing viral genomes from the environment using fosmid clones: the case of haloviruses.

Garcia-Heredia I, Martin-Cuadrado AB, Mojica FJ, Santos F, Mira A, Antón J, Rodriguez-Valera F.

PLoS One. 2012;7(3):e33802. doi: 10.1371/journal.pone.0033802. Epub 2012 Mar 30.


New abundant microbial groups in aquatic hypersaline environments.

Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F.

Sci Rep. 2011;1:135. doi: 10.1038/srep00135. Epub 2011 Oct 31.


Quorum quenching in cultivable bacteria from dense marine coastal microbial communities.

Romero M, Martin-Cuadrado AB, Roca-Rivada A, Cabello AM, Otero A.

FEMS Microbiol Ecol. 2011 Feb;75(2):205-17. doi: 10.1111/j.1574-6941.2010.01011.x. Epub 2010 Dec 13.


The bacterial pan-genome:a new paradigm in microbiology.

Mira A, Martín-Cuadrado AB, D'Auria G, Rodríguez-Valera F.

Int Microbiol. 2010 Jun;13(2):45-57. Review.


Characterization of glycoside hydrolase family 5 proteins in Schizosaccharomyces pombe.

Dueñas-Santero E, Martín-Cuadrado AB, Fontaine T, Latgé JP, del Rey F, Vázquez de Aldana C.

Eukaryot Cell. 2010 Nov;9(11):1650-60. doi: 10.1128/EC.00187-10. Epub 2010 Sep 17.


Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing.

Ghai R, Martin-Cuadrado AB, Molto AG, Heredia IG, Cabrera R, Martin J, Verdú M, Deschamps P, Moreira D, López-García P, Mira A, Rodriguez-Valera F.

ISME J. 2010 Sep;4(9):1154-66. doi: 10.1038/ismej.2010.44. Epub 2010 Apr 15.


Viral and microbial community dynamics in four aquatic environments.

Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F.

ISME J. 2010 Jun;4(6):739-51. doi: 10.1038/ismej.2010.1. Epub 2010 Feb 11.


Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber.

Pasić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, Rodriguez-Valera F.

BMC Genomics. 2009 Dec 1;10:570. doi: 10.1186/1471-2164-10-570.


Explaining microbial population genomics through phage predation.

Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasić L, Thingstad TF, Rohwer F, Mira A.

Nat Rev Microbiol. 2009 Nov;7(11):828-36. doi: 10.1038/nrmicro2235. Review.


CO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.

Martin-Cuadrado AB, Ghai R, Gonzaga A, Rodriguez-Valera F.

Appl Environ Microbiol. 2009 Dec;75(23):7436-44. doi: 10.1128/AEM.01283-09. Epub 2009 Oct 2.


Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.

Ivars-Martinez E, Martin-Cuadrado AB, D'Auria G, Mira A, Ferriera S, Johnson J, Friedman R, Rodriguez-Valera F.

ISME J. 2008 Dec;2(12):1194-212. doi: 10.1038/ismej.2008.74. Epub 2008 Jul 31.


The Schizosaccharomyces pombe endo-1,3-beta-glucanase Eng1 contains a novel carbohydrate binding module required for septum localization.

Martín-Cuadrado AB, Encinar del Dedo J, de Medina-Redondo M, Fontaine T, del Rey F, Latgé JP, Vázquez de Aldana CR.

Mol Microbiol. 2008 Jul;69(1):188-200. doi: 10.1111/j.1365-2958.2008.06275.x. Epub 2008 May 5.


Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. doi: 10.1038/ismej.2008.40. Epub 2008 May 8.


Genomic plasticity in prokaryotes: the case of the square haloarchaeon.

Cuadros-Orellana S, Martin-Cuadrado AB, Legault B, D'Auria G, Zhaxybayeva O, Papke RT, Rodriguez-Valera F.

ISME J. 2007 Jul;1(3):235-45. Epub 2007 May 31.


Characterization of the endo-beta-1,3-glucanase activity of S. cerevisiae Eng2 and other members of the GH81 family.

Martín-Cuadrado AB, Fontaine T, Esteban PF, del Dedo JE, de Medina-Redondo M, del Rey F, Latgé JP, de Aldana CR.

Fungal Genet Biol. 2008 Apr;45(4):542-53. Epub 2007 Sep 12.


Metagenomics of the deep Mediterranean, a warm bathypelagic habitat.

Martín-Cuadrado AB, López-García P, Alba JC, Moreira D, Monticelli L, Strittmatter A, Gottschalk G, Rodríguez-Valera F.

PLoS One. 2007 Sep 19;2(9):e914.


Rho4 GTPase is involved in secretion of glucanases during fission yeast cytokinesis.

Santos B, Martín-Cuadrado AB, Vázquez de Aldana CR, del Rey F, Pérez P.

Eukaryot Cell. 2005 Oct;4(10):1639-45.


Role of septins and the exocyst complex in the function of hydrolytic enzymes responsible for fission yeast cell separation.

Martín-Cuadrado AB, Morrell JL, Konomi M, An H, Petit C, Osumi M, Balasubramanian M, Gould KL, Del Rey F, de Aldana CR.

Mol Biol Cell. 2005 Oct;16(10):4867-81. Epub 2005 Aug 3.


Ace2p controls the expression of genes required for cell separation in Schizosaccharomyces pombe.

Alonso-Nuñez ML, An H, Martín-Cuadrado AB, Mehta S, Petit C, Sipiczki M, del Rey F, Gould KL, de Aldana CR.

Mol Biol Cell. 2005 Apr;16(4):2003-17. Epub 2005 Feb 2.


The endo-beta-1,3-glucanase eng1p is required for dissolution of the primary septum during cell separation in Schizosaccharomyces pombe.

Martín-Cuadrado AB, Dueñas E, Sipiczki M, Vázquez de Aldana CR, del Rey F.

J Cell Sci. 2003 May 1;116(Pt 9):1689-98.


Eng1p, an endo-1,3-beta-glucanase localized at the daughter side of the septum, is involved in cell separation in Saccharomyces cerevisiae.

Baladrón V, Ufano S, Dueñas E, Martín-Cuadrado AB, del Rey F, Vázquez de Aldana CR.

Eukaryot Cell. 2002 Oct;1(5):774-86.

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