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Role of Cis, Trans, and Inbreeding Effects on Meiotic Recombination in Saccharomyces cerevisiae.

Raffoux X, Bourge M, Dumas F, Martin OC, Falque M.

Genetics. 2018 Dec;210(4):1213-1226. doi: 10.1534/genetics.118.301644. Epub 2018 Oct 5.


Targeting Colon Luminal Lipid Peroxidation Limits Colon Carcinogenesis Associated with Red Meat Consumption.

Martin OCB, Naud N, Taché S, Debrauwer L, Chevolleau S, Dupuy J, Chantelauze C, Durand D, Pujos-Guillot E, Blas-Y-Estrada F, Urbano C, Kuhnle GGC, Santé-Lhoutellier V, Sayd T, Viala D, Blot A, Meunier N, Schlich P, Attaix D, Guéraud F, Scislowski V, Corpet DE, Pierre FHF.

Cancer Prev Res (Phila). 2018 Sep;11(9):569-580. doi: 10.1158/1940-6207.CAPR-17-0361. Epub 2018 Jun 28.


Feedback between environment and traits under selection in a seasonal environment: consequences for experimental evolution.

Collot D, Nidelet T, Ramsayer J, Martin OC, Méléard S, Dillmann C, Sicard D, Legrand J.

Proc Biol Sci. 2018 Apr 11;285(1876). pii: 20180284. doi: 10.1098/rspb.2018.0284.


High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae.

Raffoux X, Bourge M, Dumas F, Martin OC, Falque M.

Yeast. 2018 Jun;35(6):431-442. doi: 10.1002/yea.3315. Epub 2018 Apr 30.


Responses to auxin signals: an operating principle for dynamical sensitivity yet high resilience.

Grigolon S, Bravi B, Martin OC.

R Soc Open Sci. 2018 Jan 24;5(1):172098. doi: 10.1098/rsos.172098. eCollection 2018 Jan.


Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.

Pelé A, Falque M, Trotoux G, Eber F, Nègre S, Gilet M, Huteau V, Lodé M, Jousseaume T, Dechaumet S, Morice J, Poncet C, Coriton O, Martin OC, Rousseau-Gueutin M, Chèvre AM.

PLoS Genet. 2017 May 11;13(5):e1006794. doi: 10.1371/journal.pgen.1006794. eCollection 2017 May.


Phenotypic innovation through recombination in genome-scale metabolic networks.

Hosseini SR, Martin OC, Wagner A.

Proc Biol Sci. 2016 Sep 28;283(1839). pii: 20161536.


Short relaxation times but long transient times in both simple and complex reaction networks.

Henry A, Martin OC.

J R Soc Interface. 2016 Jul;13(120). pii: 20160388. doi: 10.1098/rsif.2016.0388.


Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function.

Martin OC, Krzywicki A, Zagorski M.

Phys Life Rev. 2016 Jul;17:124-58. doi: 10.1016/j.plrev.2016.06.002. Epub 2016 Jun 23. Review.


Network architectures and operating principles: Reply to comments on "Drivers of structural features in gene regulatory networks: From biophysical constraints to biological function".

Martin OC, Zagorski M.

Phys Life Rev. 2016 Jul;17:168-71. doi: 10.1016/j.plrev.2016.06.006. Epub 2016 Jun 22. No abstract available.


Constrained Allocation Flux Balance Analysis.

Mori M, Hwa T, Martin OC, De Martino A, Marinari E.

PLoS Comput Biol. 2016 Jun 29;12(6):e1004913. doi: 10.1371/journal.pcbi.1004913. eCollection 2016 Jun.


Red meat and colorectal cancer: Nrf2-dependent antioxidant response contributes to the resistance of preneoplastic colon cells to fecal water of hemoglobin- and beef-fed rats.

Surya R, Héliès-Toussaint C, Martin OC, Gauthier T, Guéraud F, Taché S, Naud N, Jouanin I, Chantelauze C, Durand D, Joly C, Pujos-Guillot E, Pierre FH, Huc L.

Carcinogenesis. 2016 Jun;37(6):635-645. doi: 10.1093/carcin/bgw035. Epub 2016 Mar 18.


Recombination patterns in maize reveal limits to crossover homeostasis.

Sidhu GK, Fang C, Olson MA, Falque M, Martin OC, Pawlowski WP.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15982-7. doi: 10.1073/pnas.1514265112. Epub 2015 Dec 14.


Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics.

Samal A, Martin OC.

Phys Rev Lett. 2015 Jun 12;114(23):238101. Epub 2015 Jun 9.


Modelling the emergence of polarity patterns for the intercellular transport of auxin in plants.

Grigolon S, Sollich P, Martin OC.

J R Soc Interface. 2015 May 6;12(106). doi: 10.1098/rsif.2014.1223.


Antibiotic suppression of intestinal microbiota reduces heme-induced lipoperoxidation associated with colon carcinogenesis in rats.

Martin OC, Lin C, Naud N, Tache S, Raymond-Letron I, Corpet DE, Pierre FH.

Nutr Cancer. 2015;67(1):119-25. doi: 10.1080/01635581.2015.976317. Epub 2014 Dec 16.


Combined fluorescent and electron microscopic imaging unveils the specific properties of two classes of meiotic crossovers.

Anderson LK, Lohmiller LD, Tang X, Hammond DB, Javernick L, Shearer L, Basu-Roy S, Martin OC, Falque M.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13415-20. doi: 10.1073/pnas.1406846111. Epub 2014 Sep 2.


Crossover localisation is regulated by the neddylation posttranslational regulatory pathway.

Jahns MT, Vezon D, Chambon A, Pereira L, Falque M, Martin OC, Chelysheva L, Grelon M.

PLoS Biol. 2014 Aug 12;12(8):e1001930. doi: 10.1371/journal.pbio.1001930. eCollection 2014 Aug.


Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms.

Barve A, Hosseini SR, Martin OC, Wagner A.

BMC Syst Biol. 2014 Apr 23;8:48. doi: 10.1186/1752-0509-8-48.


Crossover rate between homologous chromosomes and interference are regulated by the addition of specific unpaired chromosomes in Brassica.

Suay L, Zhang D, Eber F, Jouy H, Lodé M, Huteau V, Coriton O, Szadkowski E, Leflon M, Martin OC, Falque M, Jenczewski E, Paillard S, Chèvre AM.

New Phytol. 2014 Jan;201(2):645-56. doi: 10.1111/nph.12534. Epub 2013 Oct 1.


Shining fresh light on the evolution of photosynthesis.

Samal A, Martin OC.

Elife. 2013 Sep 28;2:e01403. doi: 10.7554/eLife.01403.


Intraspecific variation of recombination rate in maize.

Bauer E, Falque M, Walter H, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Rincent R, Schipprack W, Altmann T, Flament P, Melchinger AE, Menz M, Moreno-González J, Ouzunova M, Revilla P, Charcosset A, Martin OC, Schön CC.

Genome Biol. 2013;14(9):R103.


Hot regions of noninterfering crossovers coexist with a nonuniformly interfering pathway in Arabidopsis thaliana.

Basu-Roy S, Gauthier F, Giraut L, Mézard C, Falque M, Martin OC.

Genetics. 2013 Nov;195(3):769-79. doi: 10.1534/genetics.113.155549. Epub 2013 Sep 11.


Calcium and α-tocopherol suppress cured-meat promotion of chemically induced colon carcinogenesis in rats and reduce associated biomarkers in human volunteers.

Pierre FH, Martin OC, Santarelli RL, Taché S, Naud N, Guéraud F, Audebert M, Dupuy J, Meunier N, Attaix D, Vendeuvre JL, Mirvish SS, Kuhnle GC, Cano N, Corpet DE.

Am J Clin Nutr. 2013 Nov;98(5):1255-62. doi: 10.3945/ajcn.113.061069. Epub 2013 Sep 11.


Relationship between the chemical and morphological characteristics of human dentin after Er:YAG laser irradiation.

Soares LE, Martin OC, Moriyama LT, Kurachi C, Martin AA.

J Biomed Opt. 2013 Jun;18(6):068001. doi: 10.1117/1.JBO.18.6.068001.


Network function shapes network structure: the case of the Arabidopsis flower organ specification genetic network.

Henry A, Monéger F, Samal A, Martin OC.

Mol Biosyst. 2013 Jul;9(7):1726-35. doi: 10.1039/c3mb25562j. Epub 2013 Apr 12.


Edge usage, motifs, and regulatory logic for cell cycling genetic networks.

Zagorski M, Krzywicki A, Martin OC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jan;87(1):012727. Epub 2013 Jan 30.


A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.


Genome-wide crossover distribution in Arabidopsis thaliana meiosis reveals sex-specific patterns along chromosomes.

Giraut L, Falque M, Drouaud J, Pereira L, Martin OC, Mézard C.

PLoS Genet. 2011 Nov;7(11):e1002354. doi: 10.1371/journal.pgen.1002354. Epub 2011 Nov 3.


Motifs emerge from function in model gene regulatory networks.

Burda Z, Krzywicki A, Martin OC, Zagorski M.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):17263-8. doi: 10.1073/pnas.1109435108. Epub 2011 Sep 29.


Environmental versatility promotes modularity in genome-scale metabolic networks.

Samal A, Wagner A, Martin OC.

BMC Syst Biol. 2011 Aug 24;5:135. doi: 10.1186/1752-0509-5-135.


Distribution of parental genome blocks in recombinant inbred lines.

Martin OC, Hospital F.

Genetics. 2011 Oct;189(2):645-54. doi: 10.1534/genetics.111.129700. Epub 2011 Aug 11.


Randomizing genome-scale metabolic networks.

Samal A, Martin OC.

PLoS One. 2011;6(7):e22295. doi: 10.1371/journal.pone.0022295. Epub 2011 Jul 14.


Phenotypic robustness can increase phenotypic variability after nongenetic perturbations in gene regulatory circuits.

Espinosa-Soto C, Martin OC, Wagner A.

J Evol Biol. 2011 Jun;24(6):1284-97. doi: 10.1111/j.1420-9101.2011.02261.x. Epub 2011 Mar 28.


CODA (crossover distribution analyzer): quantitative characterization of crossover position patterns along chromosomes.

Gauthier F, Martin OC, Falque M.

BMC Bioinformatics. 2011 Jan 20;12:27. doi: 10.1186/1471-2105-12-27.


Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits.

Espinosa-Soto C, Martin OC, Wagner A.

BMC Evol Biol. 2011 Jan 6;11:5. doi: 10.1186/1471-2148-11-5.


Quantifying slow evolutionary dynamics in RNA fitness landscapes.

Sulc P, Wagner A, Martin OC.

J Bioinform Comput Biol. 2010 Dec;8(6):1027-40.


Distribution of essential interactions in model gene regulatory networks under mutation-selection balance.

Burda Z, Krzywicki A, Martin OC, Zagorski M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jul;82(1 Pt 1):011908. Epub 2010 Jul 14.


Challenges in experimental data integration within genome-scale metabolic models.

Bourguignon PY, Samal A, Képès F, Jost J, Martin OC.

Algorithms Mol Biol. 2010 Apr 22;5:20. doi: 10.1186/1748-7188-5-20.


Return probabilities and hitting times of random walks on sparse Erdös-Rényi graphs.

Martin OC, Sulc P.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031111. Epub 2010 Mar 11.


Genotype networks in metabolic reaction spaces.

Samal A, Matias Rodrigues JF, Jost J, Martin OC, Wagner A.

BMC Syst Biol. 2010 Mar 19;4:30. doi: 10.1186/1752-0509-4-30.


Two types of meiotic crossovers coexist in maize.

Falque M, Anderson LK, Stack SM, Gauthier F, Martin OC.

Plant Cell. 2009 Dec;21(12):3915-25. doi: 10.1105/tpc.109.071514. Epub 2009 Dec 29.


Effects of recombination on complex regulatory circuits.

Martin OC, Wagner A.

Genetics. 2009 Oct;183(2):673-84, 1SI-8SI. doi: 10.1534/genetics.109.104174. Epub 2009 Aug 3.


Telomere behavior in a hybrid yeast.

Martin OC, DeSevo CG, Guo BZ, Koshland DE, Dunham MJ, Zheng Y.

Cell Res. 2009 Jul;19(7):910-2. doi: 10.1038/cr.2009.65. No abstract available.


Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).

Saintenac C, Falque M, Martin OC, Paux E, Feuillet C, Sourdille P.

Genetics. 2009 Feb;181(2):393-403. doi: 10.1534/genetics.108.097469. Epub 2008 Dec 8.


Adaptive networks of trading agents.

Burda Z, Krzywicki A, Martin OC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Oct;78(4 Pt 2):046106. Epub 2008 Oct 13.


Neutral network sizes of biological RNA molecules can be computed and are not atypically small.

Jörg T, Martin OC, Wagner A.

BMC Bioinformatics. 2008 Oct 30;9:464. doi: 10.1186/1471-2105-9-464.


Multifunctionality and robustness trade-offs in model genetic circuits.

Martin OC, Wagner A.

Biophys J. 2008 Apr 15;94(8):2927-37. doi: 10.1529/biophysj.107.114348.


Network of inherent structures in spin glasses: scaling and scale-free distributions.

Burda Z, Krzywicki A, Martin OC.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 1):051107. Epub 2007 Nov 9.


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