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Items: 1 to 50 of 125

1.

The comparative genomics and complex population history of Papio baboons.

Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, Burrell A, Schrempf D, Noll A, Kothe M, Kopp GH, Liu Y, Murali S, Billis K, Martin FJ, Muffato M, Cox L, Else J, Disotell T, Muzny DM, Phillips-Conroy J, Aken B, Eichler EE, Marques-Bonet T, Kosiol C, Batzer MA, Hahn MW, Tung J, Zinner D, Roos C, Jolly CJ, Gibbs RA, Worley KC; Baboon Genome Analysis Consortium.

Sci Adv. 2019 Jan 30;5(1):eaau6947. doi: 10.1126/sciadv.aau6947. eCollection 2019 Jan.

2.

Ensembl 2019.

Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, Gil L, Grego T, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, Kay M, Laird MR, Lavidas I, Liu Z, Loveland JE, Marugán JC, Maurel T, McMahon AC, Moore B, Morales J, Mudge JM, Nuhn M, Ogeh D, Parker A, Parton A, Patricio M, Abdul Salam AI, Schmitt BM, Schuilenburg H, Sheppard D, Sparrow H, Stapleton E, Szuba M, Taylor K, Threadgold G, Thormann A, Vullo A, Walts B, Winterbottom A, Zadissa A, Chakiachvili M, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Yates AD, Zerbino DR, Flicek P.

Nucleic Acids Res. 2019 Jan 8;47(D1):D745-D751. doi: 10.1093/nar/gky1113.

3.

GENCODE reference annotation for the human and mouse genomes.

Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, Mudge JM, Sisu C, Wright J, Armstrong J, Barnes I, Berry A, Bignell A, Carbonell Sala S, Chrast J, Cunningham F, Di Domenico T, Donaldson S, Fiddes IT, García Girón C, Gonzalez JM, Grego T, Hardy M, Hourlier T, Hunt T, Izuogu OG, Lagarde J, Martin FJ, Martínez L, Mohanan S, Muir P, Navarro FCP, Parker A, Pei B, Pozo F, Ruffier M, Schmitt BM, Stapleton E, Suner MM, Sycheva I, Uszczynska-Ratajczak B, Xu J, Yates A, Zerbino D, Zhang Y, Aken B, Choudhary JS, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Paten B, Reymond A, Tress ML, Flicek P.

Nucleic Acids Res. 2019 Jan 8;47(D1):D766-D773. doi: 10.1093/nar/gky955.

4.
5.

Ensembl 2018.

Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, To JK, Laird MR, Lavidas I, Liu Z, Loveland JE, Maurel T, McLaren W, Moore B, Mudge J, Murphy DN, Newman V, Nuhn M, Ogeh D, Ong CK, Parker A, Patricio M, Riat HS, Schuilenburg H, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Zadissa A, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Cunningham F, Yates A, Flicek P.

Nucleic Acids Res. 2018 Jan 4;46(D1):D754-D761. doi: 10.1093/nar/gkx1098.

6.

Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation.

Pujar S, O'Leary NA, Farrell CM, Loveland JE, Mudge JM, Wallin C, Girón CG, Diekhans M, Barnes I, Bennett R, Berry AE, Cox E, Davidson C, Goldfarb T, Gonzalez JM, Hunt T, Jackson J, Joardar V, Kay MP, Kodali VK, Martin FJ, McAndrews M, McGarvey KM, Murphy M, Rajput B, Rangwala SH, Riddick LD, Seal RL, Suner MM, Webb D, Zhu S, Aken BL, Bruford EA, Bult CJ, Frankish A, Murphy T, Pruitt KD.

Nucleic Acids Res. 2018 Jan 4;46(D1):D221-D228. doi: 10.1093/nar/gkx1031.

7.

Visual Acuity Improves in Children and Adolescents With Idiopathic Infantile Nystagmus.

Balzer BWR, Catt CJ, Bou-Abdou M, Martin FJ.

Asia Pac J Ophthalmol (Phila). 2018 Mar-Apr;7(2):99-101. doi: 10.22608/APO.201795. Epub 2017 Oct 3.

8.

One-carbon metabolism, cognitive impairment and CSF measures of Alzheimer pathology: homocysteine and beyond.

Dayon L, Guiraud SP, Corthésy J, Da Silva L, Migliavacca E, Tautvydaitė D, Oikonomidi A, Moullet B, Henry H, Métairon S, Marquis J, Descombes P, Collino S, Martin FJ, Montoliu I, Kussmann M, Wojcik J, Bowman GL, Popp J.

Alzheimers Res Ther. 2017 Jun 17;9(1):43. doi: 10.1186/s13195-017-0270-x.

9.

Photographic assessment of retinal hemorrhages in infant head injury: the Childhood Hemorrhagic Retinopathy Study.

Bhardwaj G, Jacobs MB, Martin FJ, Moran KT, Prelog K, Donaldson C, Vollmer-Conna U, Coroneo MT.

J AAPOS. 2017 Feb;21(1):28-33.e2. doi: 10.1016/j.jaapos.2016.11.020. Epub 2017 Jan 16.

PMID:
28104500
10.

Metabonomics of ageing - Towards understanding metabolism of a long and healthy life.

Martin FJ, Montoliu I, Kussmann M.

Mech Ageing Dev. 2017 Jul;165(Pt B):171-179. doi: 10.1016/j.mad.2016.12.009. Epub 2016 Dec 23. Review.

PMID:
28017698
11.

Ensembl 2017.

Aken BL, Achuthan P, Akanni W, Amode MR, Bernsdorff F, Bhai J, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Juettemann T, Keenan S, Laird MR, Lavidas I, Maurel T, McLaren W, Moore B, Murphy DN, Nag R, Newman V, Nuhn M, Ong CK, Parker A, Patricio M, Riat HS, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Wilder SP, Zadissa A, Kostadima M, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Cunningham F, Yates A, Zerbino DR, Flicek P.

Nucleic Acids Res. 2017 Jan 4;45(D1):D635-D642. doi: 10.1093/nar/gkw1104. Epub 2016 Nov 28.

12.

The Ensembl gene annotation system.

Aken BL, Ayling S, Barrell D, Clarke L, Curwen V, Fairley S, Fernandez Banet J, Billis K, García Girón C, Hourlier T, Howe K, Kähäri A, Kokocinski F, Martin FJ, Murphy DN, Nag R, Ruffier M, Schuster M, Tang YA, Vogel JH, White S, Zadissa A, Flicek P, Searle SM.

Database (Oxford). 2016 Jun 23;2016. pii: baw093. doi: 10.1093/database/baw093. Print 2016.

13.

Reply.

Zheng L, Gillies M, Martin FJ.

J AAPOS. 2016 Apr;20(2):187-8. doi: 10.1016/j.jaapos.2016.01.005. No abstract available.

PMID:
27079605
14.

Divergence in gene expression within and between two closely related flycatcher species.

Uebbing S, Künstner A, Mäkinen H, Backström N, Bolivar P, Burri R, Dutoit L, Mugal CF, Nater A, Aken B, Flicek P, Martin FJ, Searle SM, Ellegren H.

Mol Ecol. 2016 May;25(9):2015-28. doi: 10.1111/mec.13596. Epub 2016 Apr 2.

15.

Ensembl 2016.

Yates A, Akanni W, Amode MR, Barrell D, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Johnson N, Juettemann T, Keenan S, Lavidas I, Martin FJ, Maurel T, McLaren W, Murphy DN, Nag R, Nuhn M, Parker A, Patricio M, Pignatelli M, Rahtz M, Riat HS, Sheppard D, Taylor K, Thormann A, Vullo A, Wilder SP, Zadissa A, Birney E, Harrow J, Muffato M, Perry E, Ruffier M, Spudich G, Trevanion SJ, Cunningham F, Aken BL, Zerbino DR, Flicek P.

Nucleic Acids Res. 2016 Jan 4;44(D1):D710-6. doi: 10.1093/nar/gkv1157. Epub 2015 Dec 19.

16.

Central retinal vein occlusion in an otherwise healthy child treated successfully with a single injection of bevacizumab.

Zheng L, Gillies M, Martin FJ.

J AAPOS. 2015 Oct;19(5):473-4. doi: 10.1016/j.jaapos.2015.04.012.

PMID:
26486035
17.

Effect of bioactive glass particles on osteogenic differentiation of adipose-derived mesenchymal stem cells seeded on lactide and caprolactone based scaffolds.

Larrañaga A, Alonso-Varona A, Palomares T, Rubio-Azpeitia E, Aldazabal P, Martin FJ, Sarasua JR.

J Biomed Mater Res A. 2015 Dec;103(12):3815-24. doi: 10.1002/jbm.a.35525. Epub 2015 Jul 1.

PMID:
26074489
18.

Primary congenital glaucoma outcomes: lessons from 23 years of follow-up.

Zagora SL, Funnell CL, Martin FJ, Smith JE, Hing S, Billson FA, Veillard AS, Jamieson RV, Grigg JR.

Am J Ophthalmol. 2015 Apr;159(4):788-96. doi: 10.1016/j.ajo.2015.01.019. Epub 2015 Jan 26.

PMID:
25634533
19.

KMT1E-mediated chromatin modifications at the FcγRIIb promoter regulate thymocyte development.

Martin FJ, Xu Y, Lohmann F, Ciccone DN, Nicholson TB, Loureiro JJ, Chen T, Huang Q.

Genes Immun. 2015 Mar;16(2):162-9. doi: 10.1038/gene.2014.70. Epub 2015 Jan 8.

PMID:
25569264
20.

Effectiveness of opioid rotation in the control of cancer pain: the ROTODOL study.

González-Barboteo J, Alentorn XG, Manuel FA, Candel VA, Eito MA, Sánchez-Magro I, Álvarez MN, Martín FJ, Porta-Sales J.

J Opioid Manag. 2014 Nov-Dec;10(6):395-403. doi: 10.5055/jom.2014.0236.

PMID:
25531957
21.

Grading system for retinal hemorrhages in abusive head trauma: clinical description and reliability study.

Bhardwaj G, Jacobs MB, Martin FJ, Donaldson C, Moran KT, Vollmer-Conna U, Mitchell P, Coroneo MT.

J AAPOS. 2014 Dec;18(6):523-8. doi: 10.1016/j.jaapos.2014.09.006.

PMID:
25498461
22.

Ensembl 2015.

Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Johnson N, Juettemann T, Kähäri AK, Keenan S, Martin FJ, Maurel T, McLaren W, Murphy DN, Nag R, Overduin B, Parker A, Patricio M, Perry E, Pignatelli M, Riat HS, Sheppard D, Taylor K, Thormann A, Vullo A, Wilder SP, Zadissa A, Aken BL, Birney E, Harrow J, Kinsella R, Muffato M, Ruffier M, Searle SM, Spudich G, Trevanion SJ, Yates A, Zerbino DR, Flicek P.

Nucleic Acids Res. 2015 Jan;43(Database issue):D662-9. doi: 10.1093/nar/gku1010. Epub 2014 Oct 28.

23.

A study of the mechanical properties and cytocompatibility of lactide and caprolactone based scaffolds filled with inorganic bioactive particles.

Larrañaga A, Diamanti E, Rubio E, Palomares T, Alonso-Varona A, Aldazabal P, Martin FJ, Sarasua JR.

Mater Sci Eng C Mater Biol Appl. 2014 Sep;42:451-60. doi: 10.1016/j.msec.2014.05.061. Epub 2014 Jun 6.

PMID:
25063141
24.

Vision screening in preschoolers: the New South Wales Statewide Eyesight Preschooler Screening program.

Blows SJ, Murphy EP, Martin FJ, Davies RM.

Med J Aust. 2014 Mar 3;200(4):222-5.

PMID:
24580526
25.

Ensembl 2014.

Flicek P, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt S, Johnson N, Juettemann T, Kähäri AK, Keenan S, Kulesha E, Martin FJ, Maurel T, McLaren WM, Murphy DN, Nag R, Overduin B, Pignatelli M, Pritchard B, Pritchard E, Riat HS, Ruffier M, Sheppard D, Taylor K, Thormann A, Trevanion SJ, Vullo A, Wilder SP, Wilson M, Zadissa A, Aken BL, Birney E, Cunningham F, Harrow J, Herrero J, Hubbard TJ, Kinsella R, Muffato M, Parker A, Spudich G, Yates A, Zerbino DR, Searle SM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D749-55. doi: 10.1093/nar/gkt1196. Epub 2013 Dec 6.

26.

APAO's Commitment to Ophthalmic Education.

Lam DS, Martin FJ, Tham CC.

Asia Pac J Ophthalmol (Phila). 2012 Jul-Aug;1(4):190-2. doi: 10.1097/APO.0b013e318260069e.

27.

Unilateral inferior rectus hypoplasia in a child with Axenfeld-Rieger syndrome.

Bhate M, Martin FJ.

J AAPOS. 2012 Jun;16(3):304-6. doi: 10.1016/j.jaapos.2012.02.014.

PMID:
22681952
28.

Dynamic analysis of the photoenhancement process of colloidal quantum dots with different surface modifications.

Llopis MV, Rodríguez JC, Martín FJ, Coto AM, Fernández-Argüelles MT, Costa-Fernández JM, Sanz-Medel A.

Nanotechnology. 2011 Sep 23;22(38):385703. doi: 10.1088/0957-4484/22/38/385703. Epub 2011 Aug 31.

PMID:
21878719
29.

Staphylococcus aureus protein A mediates invasion across airway epithelial cells through activation of RhoA GTPase signaling and proteolytic activity.

Soong G, Martin FJ, Chun J, Cohen TS, Ahn DS, Prince A.

J Biol Chem. 2011 Oct 14;286(41):35891-8. doi: 10.1074/jbc.M111.295386. Epub 2011 Aug 30.

30.

Induction of type I interferon signaling by Pseudomonas aeruginosa is diminished in cystic fibrosis epithelial cells.

Parker D, Cohen TS, Alhede M, Harfenist BS, Martin FJ, Prince A.

Am J Respir Cell Mol Biol. 2012 Jan;46(1):6-13. doi: 10.1165/rcmb.2011-0080OC.

31.

Streptococcus pneumoniae DNA initiates type I interferon signaling in the respiratory tract.

Parker D, Martin FJ, Soong G, Harfenist BS, Aguilar JL, Ratner AJ, Fitzgerald KA, Schindler C, Prince A.

MBio. 2011 May 17;2(3):e00016-11. doi: 10.1128/mBio.00016-11. Print 2011.

32.

Participation of CD11c(+) leukocytes in methicillin-resistant Staphylococcus aureus clearance from the lung.

Martin FJ, Parker D, Harfenist BS, Soong G, Prince A.

Infect Immun. 2011 May;79(5):1898-904. doi: 10.1128/IAI.01299-10. Epub 2011 Mar 14.

33.

Crystal structures of Xanthomonas small heat shock protein provide a structural basis for an active molecular chaperone oligomer.

Hilario E, Martin FJ, Bertolini MC, Fan L.

J Mol Biol. 2011 Apr 22;408(1):74-86. doi: 10.1016/j.jmb.2011.02.004. Epub 2011 Feb 15.

34.

[Beta-blocker treatment in elderly patients with acute heart failure in the emergency departments].

Llorens Soriano P, Miró O, Martín FJ, Herrero P.

Med Clin (Barc). 2011 Apr 23;136(11):509; author reply 509-10. doi: 10.1016/j.medcli.2010.03.038. Epub 2010 Oct 23. Spanish. No abstract available.

PMID:
20971481
35.

Successful treatment of infantile haemangiomas of the orbit with propranolol.

Li YC, McCahon E, Rowe NA, Martin PA, Wilcsek GA, Martin FJ.

Clin Exp Ophthalmol. 2010 Aug;38(6):554-9. doi: 10.1111/j.1442-9071.2010.02327.x. Epub 2010 May 10.

PMID:
20491798
36.

A systematic review of the diagnostic accuracy of ocular signs in pediatric abusive head trauma.

Bhardwaj G, Chowdhury V, Jacobs MB, Moran KT, Martin FJ, Coroneo MT.

Ophthalmology. 2010 May;117(5):983-992.e17. doi: 10.1016/j.ophtha.2009.09.040. Epub 2010 Mar 27. Review.

PMID:
20347153
37.

A postinfluenza model of Staphylococcus aureus pneumonia.

Lee MH, Arrecubieta C, Martin FJ, Prince A, Borczuk AC, Lowy FD.

J Infect Dis. 2010 Feb 15;201(4):508-15. doi: 10.1086/650204.

38.

Retinopathy of prematurity in extremely low birth weight infants in Malaysia.

Choo MM, Martin FJ, Theam LC, U-Teng C.

J AAPOS. 2009 Oct;13(5):446-9. doi: 10.1016/j.jaapos.2009.06.008.

PMID:
19840721
39.

Staphylococcus aureus activates type I IFN signaling in mice and humans through the Xr repeated sequences of protein A.

Martin FJ, Gomez MI, Wetzel DM, Memmi G, O'Seaghdha M, Soong G, Schindler C, Prince A.

J Clin Invest. 2009 Jul;119(7):1931-9.

40.

Gene and genome trees conflict at many levels.

Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2209-19. doi: 10.1098/rstb.2009.0042.

41.

Does a water-based lubricant affect Pap smear and cervical microbiology results?

Pawlik M, Martin FJ.

Can Fam Physician. 2009 Apr;55(4):376-7. No abstract available.

42.

[Functional status as risk factor for mortality in patients with acute heart failure at the emergency department].

Llorens P, Perelló R, Martín FJ, Herrero P.

Med Clin (Barc). 2009 Oct 17;133(14):566-7. doi: 10.1016/j.medcli.2008.10.049. Epub 2009 Mar 13. Spanish. No abstract available.

PMID:
19285321
43.

Epidemiology of heart failure in Spain: toward a more global perspective.

Martín FJ, Herrero P, Llorens Soriano P, Gil V.

Rev Esp Cardiol. 2009 Mar;62(3):334-5; author reply 335-6. English, Spanish. No abstract available.

44.

Recurring cluster and operon assembly for Phenylacetate degradation genes.

Martin FJ, McInerney JO.

BMC Evol Biol. 2009 Feb 10;9:36. doi: 10.1186/1471-2148-9-36.

45.

[Detection and initial management of the systemic inflammatory response syndrome in medicine emergency room: 24 hours follow-up in a general hospital].

Candel FJ, Martínez-Sagasti F, Matesanz M, González Del Castillo J, Ortuño F, Martín FJ, Moneo A, Candel I.

An Med Interna. 2008 May;25(5):205-8. Spanish.

PMID:
18769740
46.

TLR2 regulates gap junction intercellular communication in airway cells.

Martin FJ, Prince AS.

J Immunol. 2008 Apr 1;180(7):4986-93.

47.

Outcomes in retinoblastoma, 1974-2005: the Children's Hospital, Westmead.

Berman EL, Donaldson CE, Giblin M, Martin FJ.

Clin Exp Ophthalmol. 2007 Jan-Feb;35(1):5-12.

PMID:
17300564
48.

Ocular adnexal Langerhans cell histiocytosis clinical features and management.

Maccheron LJ, McNab AA, Elder J, Selva D, Martin FJ, Clement CI, Sainani A, Sullivan TJ.

Orbit. 2006 Sep;25(3):169-77.

PMID:
16987763
49.

Comparison of silastic and banked fascia lata in pediatric frontalis suspension.

Hersh D, Martin FJ, Rowe N.

J Pediatr Ophthalmol Strabismus. 2006 Jul-Aug;43(4):212-8.

PMID:
16915899
50.

Hazardous contact: a case of visual loss following Pseudomonas keratitis from novelty contact lens wear.

Li YC, Zeldovich A, Chua BJ, Rowe NJ, Martin FJ, McClellan KA.

Med J Aust. 2006 Aug 7;185(3):173-4. No abstract available.

PMID:
16893362

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