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Items: 1 to 50 of 217

1.

RNA-induced initiation of transcriptional silencing (RITS) complex structure and function.

Bhattacharjee S, Roche B, Martienssen RA.

RNA Biol. 2019 Sep;16(9):1133-1146. doi: 10.1080/15476286.2019.1621624. Epub 2019 Jun 18.

PMID:
31213126
2.

Getting in LINE with Replication.

Schorn AJ, Martienssen R.

Mol Cell. 2019 May 2;74(3):415-417. doi: 10.1016/j.molcel.2019.04.023.

PMID:
31051138
3.

Loss of CG Methylation in Marchantia polymorpha Causes Disorganization of Cell Division and Reveals Unique DNA Methylation Regulatory Mechanisms of Non-CG Methylation.

Ikeda Y, Nishihama R, Yamaoka S, Arteaga-Vazquez MA, Aguilar-Cruz A, Grimanelli D, Pogorelcnik R, Martienssen RA, Yamato KT, Kohchi T, Hirayama T, Mathieu O.

Plant Cell Physiol. 2018 Dec 1;59(12):2421-2431. doi: 10.1093/pcp/pcy161.

PMID:
30102384
4.

Tie-Break: Host and Retrotransposons Play tRNA.

Schorn AJ, Martienssen R.

Trends Cell Biol. 2018 Oct;28(10):793-806. doi: 10.1016/j.tcb.2018.05.006. Epub 2018 Jun 19. Review.

5.

Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.

Choi K, Zhao X, Tock AJ, Lambing C, Underwood CJ, Hardcastle TJ, Serra H, Kim J, Cho HS, Kim J, Ziolkowski PA, Yelina NE, Hwang I, Martienssen RA, Henderson IR.

Genome Res. 2018 Apr;28(4):532-546. doi: 10.1101/gr.225599.117. Epub 2018 Mar 12.

6.

Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation.

Underwood CJ, Choi K, Lambing C, Zhao X, Serra H, Borges F, Simorowski J, Ernst E, Jacob Y, Henderson IR, Martienssen RA.

Genome Res. 2018 Apr;28(4):519-531. doi: 10.1101/gr.227116.117. Epub 2018 Mar 12.

7.

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in Arabidopsis.

Borges F, Parent JS, van Ex F, Wolff P, Martínez G, Köhler C, Martienssen RA.

Nat Genet. 2018 Feb;50(2):186-192. doi: 10.1038/s41588-017-0032-5. Epub 2018 Jan 15.

8.

Genome-Wide Analysis of the Arabidopsis Replication Timing Program.

Concia L, Brooks AM, Wheeler E, Zynda GJ, Wear EE, LeBlanc C, Song J, Lee TJ, Pascuzzi PE, Martienssen RA, Vaughn MW, Thompson WF, Hanley-Bowdoin L.

Plant Physiol. 2018 Mar;176(3):2166-2185. doi: 10.1104/pp.17.01537. Epub 2018 Jan 4.

9.

Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex.

He H, Li Y, Dong Q, Chang AY, Gao F, Chi Z, Su M, Zhang F, Ban H, Martienssen R, Chen YH, Li F.

Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12524-12529. doi: 10.1073/pnas.1712961114. Epub 2017 Nov 6.

10.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

11.

Barbara McClintock's Final Years as Nobelist and Mentor: A Memoir.

Chomet P, Martienssen R.

Cell. 2017 Sep 7;170(6):1049-1054. doi: 10.1016/j.cell.2017.08.040.

12.

New roles for Dicer in the nucleolus and its relevance to cancer.

Roche B, Arcangioli B, Martienssen R.

Cell Cycle. 2017 Sep 17;16(18):1643-1653. doi: 10.1080/15384101.2017.1361568. Epub 2017 Aug 28. Review.

13.

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips.

Wear EE, Song J, Zynda GJ, LeBlanc C, Lee TJ, Mickelson-Young L, Concia L, Mulvaney P, Szymanski ES, Allen GC, Martienssen RA, Vaughn MW, Hanley-Bowdoin L, Thompson WF.

Plant Cell. 2017 Sep;29(9):2126-2149. doi: 10.1105/tpc.17.00037. Epub 2017 Aug 25.

14.

LTR-Retrotransposon Control by tRNA-Derived Small RNAs.

Schorn AJ, Gutbrod MJ, LeBlanc C, Martienssen R.

Cell. 2017 Jun 29;170(1):61-71.e11. doi: 10.1016/j.cell.2017.06.013.

15.

The Conserved RNA Binding Cyclophilin, Rct1, Regulates Small RNA Biogenesis and Splicing Independent of Heterochromatin Assembly.

Chang AY, Castel SE, Ernst E, Kim HS, Martienssen RA.

Cell Rep. 2017 Jun 20;19(12):2477-2489. doi: 10.1016/j.celrep.2017.05.086.

16.

Transcriptional reprogramming in cellular quiescence.

Roche B, Arcangioli B, Martienssen R.

RNA Biol. 2017 Jul 3;14(7):843-853. doi: 10.1080/15476286.2017.1327510. Epub 2017 May 12. Review.

17.

Genetic and epigenetic variation of transposable elements in Arabidopsis.

Underwood CJ, Henderson IR, Martienssen RA.

Curr Opin Plant Biol. 2017 Apr;36:135-141. doi: 10.1016/j.pbi.2017.03.002. Epub 2017 Mar 23. Review.

18.

Natural variation and dosage of the HEI10 meiotic E3 ligase control Arabidopsis crossover recombination.

Ziolkowski PA, Underwood CJ, Lambing C, Martinez-Garcia M, Lawrence EJ, Ziolkowska L, Griffin C, Choi K, Franklin FC, Martienssen RA, Henderson IR.

Genes Dev. 2017 Feb 1;31(3):306-317. doi: 10.1101/gad.295501.116. Epub 2017 Feb 21.

19.

Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM.

Ingouff M, Selles B, Michaud C, Vu TM, Berger F, Schorn AJ, Autran D, Van Durme M, Nowack MK, Martienssen RA, Grimanelli D.

Genes Dev. 2017 Jan 1;31(1):72-83. doi: 10.1101/gad.289397.116. Epub 2017 Jan 23.

20.

RNA interference is essential for cellular quiescence.

Roche B, Arcangioli B, Martienssen RA.

Science. 2016 Nov 11;354(6313). pii: aah5651. Epub 2016 Oct 13.

21.

Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana.

Fransz P, Linc G, Lee CR, Aflitos SA, Lasky JR, Toomajian C, Ali H, Peters J, van Dam P, Ji X, Kuzak M, Gerats T, Schubert I, Schneeberger K, Colot V, Martienssen R, Koornneef M, Nordborg M, Juenger TE, de Jong H, Schranz ME.

Plant J. 2016 Oct;88(2):159-178. doi: 10.1111/tpj.13262. Epub 2016 Sep 13.

22.

Dicer in action at replication-transcription collisions.

Ren J, Castel SE, Martienssen RA.

Mol Cell Oncol. 2015 Mar 9;2(3):e991224. doi: 10.4161/23723556.2014.991224. eCollection 2015 Jul-Sep.

23.

The Arabidopsis thaliana mobilome and its impact at the species level.

Quadrana L, Bortolini Silveira A, Mayhew GF, LeBlanc C, Martienssen RA, Jeddeloh JA, Colot V.

Elife. 2016 Jun 3;5. pii: e15716. doi: 10.7554/eLife.15716.

24.

A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe.

Pichugina T, Sugawara T, Kaykov A, Schierding W, Masuda K, Uewaki J, Grand RS, Allison JR, Martienssen RA, Nurse P, Ueno M, O'Sullivan JM.

Sci Rep. 2016 Jan 5;6:18757. doi: 10.1038/srep18757.

25.

The expanding world of small RNAs in plants.

Borges F, Martienssen RA.

Nat Rev Mol Cell Biol. 2015 Dec;16(12):727-41. doi: 10.1038/nrm4085. Epub 2015 Nov 4. Review.

26.

Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm.

Ong-Abdullah M, Ordway JM, Jiang N, Ooi SE, Kok SY, Sarpan N, Azimi N, Hashim AT, Ishak Z, Rosli SK, Malike FA, Bakar NA, Marjuni M, Abdullah N, Yaakub Z, Amiruddin MD, Nookiah R, Singh R, Low ET, Chan KL, Azizi N, Smith SW, Bacher B, Budiman MA, Van Brunt A, Wischmeyer C, Beil M, Hogan M, Lakey N, Lim CC, Arulandoo X, Wong CK, Choo CN, Wong WC, Kwan YY, Alwee SS, Sambanthamurthi R, Martienssen RA.

Nature. 2015 Sep 24;525(7570):533-7. doi: 10.1038/nature15365. Epub 2015 Sep 9.

27.

RNAi and heterochromatin assembly.

Martienssen R, Moazed D.

Cold Spring Harb Perspect Biol. 2015 Aug 3;7(8):a019323. doi: 10.1101/cshperspect.a019323. Review.

28.

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.

Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM.

Genome Biol. 2015 Apr 19;16:79. doi: 10.1186/s13059-015-0640-2.

29.

Argonautes team up to silence transposable elements in Arabidopsis.

Underwood CJ, Martienssen RA.

EMBO J. 2015 Mar 4;34(5):579-80. doi: 10.15252/embj.201590971. Epub 2015 Jan 28.

30.

Dicer promotes transcription termination at sites of replication stress to maintain genome stability.

Castel SE, Ren J, Bhattacharjee S, Chang AY, Sánchez M, Valbuena A, Antequera F, Martienssen RA.

Cell. 2014 Oct 23;159(3):572-83. doi: 10.1016/j.cell.2014.09.031. Epub 2014 Oct 16.

31.

Chromosome conformation maps in fission yeast reveal cell cycle dependent sub nuclear structure.

Grand RS, Pichugina T, Gehlen LR, Jones MB, Tsai P, Allison JR, Martienssen R, O'Sullivan JM.

Nucleic Acids Res. 2014 Nov 10;42(20):12585-99. doi: 10.1093/nar/gku965. Epub 2014 Oct 23.

32.

Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize.

Thiebaut F, Rojas CA, Grativol C, Motta MR, Vieira T, Regulski M, Martienssen RA, Farinelli L, Hemerly AS, Ferreira PC.

BMC Genomics. 2014 Sep 6;15:766. doi: 10.1186/1471-2164-15-766.

33.

Efficient transformation and artificial miRNA gene silencing in Lemna minor.

Cantó-Pastor A, Mollá-Morales A, Ernst E, Dahl W, Zhai J, Yan Y, Meyers BC, Shanklin J, Martienssen R.

Plant Biol (Stuttg). 2015 Jan;17 Suppl 1:59-65. doi: 10.1111/plb.12215. Epub 2014 Jul 2.

34.

The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB.

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, Marjuni M, Chan PL, Ithnin M, Manaf MA, Nagappan J, Chan KL, Rosli R, Halim MA, Azizi N, Budiman MA, Lakey N, Bacher B, Van Brunt A, Wang C, Hogan M, He D, MacDonald JD, Smith SW, Ordway JM, Martienssen RA, Sambanthamurthi R.

Nat Commun. 2014 Jun 30;5:4106. doi: 10.1038/ncomms5106.

35.

Potential roles for interactions between the mitochondrial and nuclear DNA throughout the cell cycle of Schizosaccharomyces pombe.

Grand RS, Martienssen R, O'Sullivan JM.

Mitochondrion. 2014 Jul;17:141-9. doi: 10.1016/j.mito.2014.04.014. Epub 2014 May 9.

36.

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum.

Grativol C, Regulski M, Bertalan M, McCombie WR, da Silva FR, Zerlotini Neto A, Vicentini R, Farinelli L, Hemerly AS, Martienssen RA, Ferreira PC.

Plant J. 2014 Jul;79(1):162-72. doi: 10.1111/tpj.12539. Epub 2014 Jun 17.

37.

Differential sRNA regulation in leaves and roots of sugarcane under water depletion.

Thiebaut F, Grativol C, Tanurdzic M, Carnavale-Bottino M, Vieira T, Motta MR, Rojas C, Vincentini R, Chabregas SM, Hemerly AS, Martienssen RA, Ferreira PC.

PLoS One. 2014 Apr 2;9(4):e93822. doi: 10.1371/journal.pone.0093822. eCollection 2014.

38.

Transgenerational epigenetic inheritance: myths and mechanisms.

Heard E, Martienssen RA.

Cell. 2014 Mar 27;157(1):95-109. doi: 10.1016/j.cell.2014.02.045. Review.

39.

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, Martienssen RA.

Nature. 2014 Apr 17;508(7496):411-5. doi: 10.1038/nature13069. Epub 2014 Mar 16.

40.

Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.

Jacob Y, Bergamin E, Donoghue MT, Mongeon V, LeBlanc C, Voigt P, Underwood CJ, Brunzelle JS, Michaels SD, Reinberg D, Couture JF, Martienssen RA.

Science. 2014 Mar 14;343(6176):1249-53. doi: 10.1126/science.1248357.

41.

CRL4-like Clr4 complex in Schizosaccharomyces pombe depends on an exposed surface of Dos1 for heterochromatin silencing.

Kuscu C, Zaratiegui M, Kim HS, Wah DA, Martienssen RA, Schalch T, Joshua-Tor L.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1795-800. doi: 10.1073/pnas.1313096111. Epub 2014 Jan 21. Erratum in: Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14307.

42.
43.

The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, Nookiah R, Amiruddin MD, Rosli R, Manaf MA, Chan KL, Halim MA, Azizi N, Lakey N, Smith SW, Budiman MA, Hogan M, Bacher B, Van Brunt A, Wang C, Ordway JM, Sambanthamurthi R, Martienssen RA.

Nature. 2013 Aug 15;500(7462):340-4. doi: 10.1038/nature12356. Epub 2013 Jul 24.

44.

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, He D, Hogan M, Budiman MA, Lee EK, DeSalle R, Kudrna D, Goicoechea JL, Wing RA, Wilson RK, Fulton RS, Ordway JM, Martienssen RA, Sambanthamurthi R.

Nature. 2013 Aug 15;500(7462):335-9. doi: 10.1038/nature12309. Epub 2013 Jul 24.

45.

Establishing epigenetic variation during genome reprogramming.

Borges F, Martienssen RA.

RNA Biol. 2013 Apr;10(4):490-4. doi: 10.4161/rna.24085.

46.

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F.

Development. 2013 Jul;140(14):2953-60. doi: 10.1242/dev.092981. Epub 2013 Jun 12.

47.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA.

Genome Res. 2013 Oct;23(10):1651-62. doi: 10.1101/gr.153510.112. Epub 2013 Jun 5.

48.

Reprogramming the epigenome in Arabidopsis pollen.

Borges F, Calarco JP, Martienssen RA.

Cold Spring Harb Symp Quant Biol. 2012;77:1-5. doi: 10.1101/sqb.2013.77.014969. Epub 2013 Apr 25. Review.

49.

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond.

Castel SE, Martienssen RA.

Nat Rev Genet. 2013 Feb;14(2):100-12. doi: 10.1038/nrg3355. Review.

50.

Lsd1 and lsd2 control programmed replication fork pauses and imprinting in fission yeast.

Holmes A, Roseaulin L, Schurra C, Waxin H, Lambert S, Zaratiegui M, Martienssen RA, Arcangioli B.

Cell Rep. 2012 Dec 27;2(6):1513-20. doi: 10.1016/j.celrep.2012.10.011. Epub 2012 Dec 20.

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