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Items: 38

1.

What happens at the lesion does not stay at the lesion: Transcription-coupled nucleotide excision repair and the effects of DNA damage on transcription in cis and trans.

Geijer ME, Marteijn JA.

DNA Repair (Amst). 2018 Aug 23. pii: S1568-7864(18)30172-1. doi: 10.1016/j.dnarep.2018.08.007. [Epub ahead of print]

2.

DNA damage-induced replication stress results in PA200-proteasome-mediated degradation of acetylated histones.

Mandemaker IK, Geijer ME, Kik I, Bezstarosti K, Rijkers E, Raams A, Janssens RC, Lans H, Hoeijmakers JH, Demmers JA, Vermeulen W, Marteijn JA.

EMBO Rep. 2018 Aug 13. pii: e45566. doi: 10.15252/embr.201745566. [Epub ahead of print]

3.

The transcription-coupled DNA repair-initiating protein CSB promotes XRCC1 recruitment to oxidative DNA damage.

Menoni H, Wienholz F, Theil AF, Janssens RC, Lans H, Campalans A, Radicella JP, Marteijn JA, Vermeulen W.

Nucleic Acids Res. 2018 Sep 6;46(15):7747-7756. doi: 10.1093/nar/gky579.

4.

Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II.

Steurer B, Janssens RC, Geverts B, Geijer ME, Wienholz F, Theil AF, Chang J, Dealy S, Pothof J, van Cappellen WA, Houtsmuller AB, Marteijn JA.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4368-E4376. doi: 10.1073/pnas.1717920115. Epub 2018 Apr 9.

5.

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway.

Mandemaker IK, van Cuijk L, Janssens RC, Lans H, Bezstarosti K, Hoeijmakers JH, Demmers JA, Vermeulen W, Marteijn JA.

Sci Rep. 2017 Nov 10;7(1):15353. doi: 10.1038/s41598-017-15194-y.

6.

Trichothiodystrophy causative TFIIEβ mutation affects transcription in highly differentiated tissue.

Theil AF, Mandemaker IK, van den Akker E, Swagemakers SMA, Raams A, Wüst T, Marteijn JA, Giltay JC, Colombijn RM, Moog U, Kotzaeridou U, Ghazvini M, von Lindern M, Hoeijmakers JHJ, Jaspers NGJ, van der Spek PJ, Vermeulen W.

Hum Mol Genet. 2017 Dec 1;26(23):4689-4698. doi: 10.1093/hmg/ddx351.

7.

Noncanonical ATM Activation and Signaling in Response to Transcription-Blocking DNA Damage.

Marteijn JA, Vermeulen W, Tresini M.

Methods Mol Biol. 2017;1599:347-361. doi: 10.1007/978-1-4939-6955-5_25.

PMID:
28477131
8.
9.

Traveling Rocky Roads: The Consequences of Transcription-Blocking DNA Lesions on RNA Polymerase II.

Steurer B, Marteijn JA.

J Mol Biol. 2017 Oct 27;429(21):3146-3155. doi: 10.1016/j.jmb.2016.11.006. Epub 2016 Nov 13. Review.

10.

Bidirectional coupling of splicing and ATM signaling in response to transcription-blocking DNA damage.

Tresini M, Marteijn JA, Vermeulen W.

RNA Biol. 2016;13(3):272-8. doi: 10.1080/15476286.2016.1142039. Epub 2016 Feb 25.

11.

Check, Check …Triple Check: Multi-Step DNA Lesion Identification by Nucleotide Excision Repair.

Marteijn JA, Hoeijmakers JH, Vermeulen W.

Mol Cell. 2015 Sep 17;59(6):885-6. doi: 10.1016/j.molcel.2015.09.007.

12.

SUMO and ubiquitin-dependent XPC exchange drives nucleotide excision repair.

van Cuijk L, van Belle GJ, Turkyilmaz Y, Poulsen SL, Janssens RC, Theil AF, Sabatella M, Lans H, Mailand N, Houtsmuller AB, Vermeulen W, Marteijn JA.

Nat Commun. 2015 Jul 7;6:7499. doi: 10.1038/ncomms8499.

13.

The core spliceosome as target and effector of non-canonical ATM signalling.

Tresini M, Warmerdam DO, Kolovos P, Snijder L, Vrouwe MG, Demmers JA, van IJcken WF, Grosveld FG, Medema RH, Hoeijmakers JH, Mullenders LH, Vermeulen W, Marteijn JA.

Nature. 2015 Jul 2;523(7558):53-8. doi: 10.1038/nature14512. Epub 2015 Jun 24.

14.

Differential binding kinetics of replication protein A during replication and the pre- and post-incision steps of nucleotide excision repair.

Gourdin AM, van Cuijk L, Tresini M, Luijsterburg MS, Nigg AL, Giglia-Mari G, Houtsmuller AB, Vermeulen W, Marteijn JA.

DNA Repair (Amst). 2014 Dec;24:46-56. doi: 10.1016/j.dnarep.2014.09.013. Epub 2014 Oct 16.

PMID:
25453469
15.

Ubiquitin at work: the ubiquitous regulation of the damage recognition step of NER.

van Cuijk L, Vermeulen W, Marteijn JA.

Exp Cell Res. 2014 Nov 15;329(1):101-9. doi: 10.1016/j.yexcr.2014.07.018. Epub 2014 Jul 22. Review.

PMID:
25062985
16.

Human ISWI complexes are targeted by SMARCA5 ATPase and SLIDE domains to help resolve lesion-stalled transcription.

Aydin ÖZ, Marteijn JA, Ribeiro-Silva C, Rodríguez López A, Wijgers N, Smeenk G, van Attikum H, Poot RA, Vermeulen W, Lans H.

Nucleic Acids Res. 2014 Jul;42(13):8473-85. doi: 10.1093/nar/gku565. Epub 2014 Jul 2.

17.

Understanding nucleotide excision repair and its roles in cancer and ageing.

Marteijn JA, Lans H, Vermeulen W, Hoeijmakers JH.

Nat Rev Mol Cell Biol. 2014 Jul;15(7):465-81. doi: 10.1038/nrm3822. Review.

PMID:
24954209
18.

Gearing up chromatin: A role for chromatin remodeling during the transcriptional restart upon DNA damage.

Mandemaker IK, Vermeulen W, Marteijn JA.

Nucleus. 2014 May-Jun;5(3):203-10. doi: 10.4161/nucl.29085. Epub 2014 May 8. Review.

19.

Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage.

Dinant C, Ampatziadis-Michailidis G, Lans H, Tresini M, Lagarou A, Grosbart M, Theil AF, van Cappellen WA, Kimura H, Bartek J, Fousteri M, Houtsmuller AB, Vermeulen W, Marteijn JA.

Mol Cell. 2013 Aug 22;51(4):469-79. doi: 10.1016/j.molcel.2013.08.007.

20.

Erythropoietic defect associated with reduced cell proliferation in mice lacking the 26S proteasome shuttling factor Rad23b.

Bergink S, Theil AF, Toussaint W, De Cuyper IM, Kulu DI, Clapes T, van der Linden R, Demmers JA, Mul EP, van Alphen FP, Marteijn JA, van Gent T, Maas A, Robin C, Philipsen S, Vermeulen W, Mitchell JR, Gutiérrez L.

Mol Cell Biol. 2013 Oct;33(19):3879-92. doi: 10.1128/MCB.05772-11. Epub 2013 Jul 29.

21.

UVSSA and USP7, a new couple in transcription-coupled DNA repair.

Schwertman P, Vermeulen W, Marteijn JA.

Chromosoma. 2013 Aug;122(4):275-84. doi: 10.1007/s00412-013-0420-2. Epub 2013 Jun 13. Review.

22.

RNF111/Arkadia is a SUMO-targeted ubiquitin ligase that facilitates the DNA damage response.

Poulsen SL, Hansen RK, Wagner SA, van Cuijk L, van Belle GJ, Streicher W, Wikström M, Choudhary C, Houtsmuller AB, Marteijn JA, Bekker-Jensen S, Mailand N.

J Cell Biol. 2013 Jun 10;201(6):797-807. doi: 10.1083/jcb.201212075.

23.

An immunoaffinity purification method for the proteomic analysis of ubiquitinated protein complexes.

Schwertman P, Bezstarosti K, Laffeber C, Vermeulen W, Demmers JA, Marteijn JA.

Anal Biochem. 2013 Sep 15;440(2):227-36. doi: 10.1016/j.ab.2013.05.020. Epub 2013 Jun 3.

24.

Disruption of TTDA results in complete nucleotide excision repair deficiency and embryonic lethality.

Theil AF, Nonnekens J, Steurer B, Mari PO, de Wit J, Lemaitre C, Marteijn JA, Raams A, Maas A, Vermeij M, Essers J, Hoeijmakers JH, Giglia-Mari G, Vermeulen W.

PLoS Genet. 2013 Apr;9(4):e1003431. doi: 10.1371/journal.pgen.1003431. Epub 2013 Apr 18.

25.

UV-induced G2 checkpoint depends on p38 MAPK and minimal activation of ATR-Chk1 pathway.

Warmerdam DO, Brinkman EK, Marteijn JA, Medema RH, Kanaar R, Smits VA.

J Cell Sci. 2013 May 1;126(Pt 9):1923-30. doi: 10.1242/jcs.118265. Epub 2013 Feb 27.

26.

Poly(ADP-ribosyl)ation links the chromatin remodeler SMARCA5/SNF2H to RNF168-dependent DNA damage signaling.

Smeenk G, Wiegant WW, Marteijn JA, Luijsterburg MS, Sroczynski N, Costelloe T, Romeijn RJ, Pastink A, Mailand N, Vermeulen W, van Attikum H.

J Cell Sci. 2013 Feb 15;126(Pt 4):889-903. doi: 10.1242/jcs.109413. Epub 2012 Dec 21.

27.

PARP1 promotes nucleotide excision repair through DDB2 stabilization and recruitment of ALC1.

Pines A, Vrouwe MG, Marteijn JA, Typas D, Luijsterburg MS, Cansoy M, Hensbergen P, Deelder A, de Groot A, Matsumoto S, Sugasawa K, Thoma N, Vermeulen W, Vrieling H, Mullenders L.

J Cell Biol. 2012 Oct 15;199(2):235-49. doi: 10.1083/jcb.201112132. Epub 2012 Oct 8.

28.

RNF168 ubiquitinates K13-15 on H2A/H2AX to drive DNA damage signaling.

Mattiroli F, Vissers JH, van Dijk WJ, Ikpa P, Citterio E, Vermeulen W, Marteijn JA, Sixma TK.

Cell. 2012 Sep 14;150(6):1182-95. doi: 10.1016/j.cell.2012.08.005.

29.

UV-sensitive syndrome protein UVSSA recruits USP7 to regulate transcription-coupled repair.

Schwertman P, Lagarou A, Dekkers DH, Raams A, van der Hoek AC, Laffeber C, Hoeijmakers JH, Demmers JA, Fousteri M, Vermeulen W, Marteijn JA.

Nat Genet. 2012 May;44(5):598-602. doi: 10.1038/ng.2230.

PMID:
22466611
30.

ATP-dependent chromatin remodeling in the DNA-damage response.

Lans H, Marteijn JA, Vermeulen W.

Epigenetics Chromatin. 2012 Jan 30;5:4. doi: 10.1186/1756-8935-5-4.

31.

Involvement of global genome repair, transcription coupled repair, and chromatin remodeling in UV DNA damage response changes during development.

Lans H, Marteijn JA, Schumacher B, Hoeijmakers JH, Jansen G, Vermeulen W.

PLoS Genet. 2010 May 6;6(5):e1000941. doi: 10.1371/journal.pgen.1000941.

32.

Nucleotide excision repair-induced H2A ubiquitination is dependent on MDC1 and RNF8 and reveals a universal DNA damage response.

Marteijn JA, Bekker-Jensen S, Mailand N, Lans H, Schwertman P, Gourdin AM, Dantuma NP, Lukas J, Vermeulen W.

J Cell Biol. 2009 Sep 21;186(6):835-47. doi: 10.1083/jcb.200902150.

33.

The ubiquitin ligase Triad1 inhibits myelopoiesis through UbcH7 and Ubc13 interacting domains.

Marteijn JA, van der Meer LT, Smit JJ, Noordermeer SM, Wissink W, Jansen P, Swarts HG, Hibbert RG, de Witte T, Sixma TK, Jansen JH, van der Reijden BA.

Leukemia. 2009 Aug;23(8):1480-9. doi: 10.1038/leu.2009.57. Epub 2009 Apr 2.

PMID:
19340006
34.

Human USP3 is a chromatin modifier required for S phase progression and genome stability.

Nicassio F, Corrado N, Vissers JH, Areces LB, Bergink S, Marteijn JA, Geverts B, Houtsmuller AB, Vermeulen W, Di Fiore PP, Citterio E.

Curr Biol. 2007 Nov 20;17(22):1972-7. Epub 2007 Nov 1.

35.

Gfi1 ubiquitination and proteasomal degradation is inhibited by the ubiquitin ligase Triad1.

Marteijn JA, van der Meer LT, van Emst L, van Reijmersdal S, Wissink W, de Witte T, Jansen JH, Van der Reijden BA.

Blood. 2007 Nov 1;110(9):3128-35. Epub 2007 Jul 23.

36.

Ubiquitylation in normal and malignant hematopoiesis: novel therapeutic targets.

Marteijn JA, Jansen JH, van der Reijden BA.

Leukemia. 2006 Sep;20(9):1511-8. Epub 2006 Jul 27.

PMID:
16926849
37.

Diminished proteasomal degradation results in accumulation of Gfi1 protein in monocytes.

Marteijn JA, van der Meer LT, Van Emst L, de Witte T, Jansen JH, van der Reijden BA.

Blood. 2007 Jan 1;109(1):100-8. Epub 2006 Aug 3.

38.

The E3 ubiquitin-protein ligase Triad1 inhibits clonogenic growth of primary myeloid progenitor cells.

Marteijn JA, van Emst L, Erpelinck-Verschueren CA, Nikoloski G, Menke A, de Witte T, Löwenberg B, Jansen JH, van der Reijden BA.

Blood. 2005 Dec 15;106(13):4114-23. Epub 2005 Aug 23.

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