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Palaeogenomic insights into the origins of French grapevine diversity.

Ramos-Madrigal J, Runge AKW, Bouby L, Lacombe T, Samaniego Castruita JA, Adam-Blondon AF, Figueiral I, Hallavant C, Martínez-Zapater JM, Schaal C, Töpfer R, Petersen B, Sicheritz-Pontén T, This P, Bacilieri R, Gilbert MTP, Wales N.

Nat Plants. 2019 Jun;5(6):595-603. doi: 10.1038/s41477-019-0437-5. Epub 2019 Jun 10.


The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.

Royo C, Torres-Pérez R, Mauri N, Diestro N, Cabezas JA, Marchal C, Lacombe T, Ibáñez J, Tornel M, Carreño J, Martínez-Zapater JM, Carbonell-Bejerano P.

Plant Physiol. 2018 Jul;177(3):1234-1253. doi: 10.1104/pp.18.00259. Epub 2018 May 31.


Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs.

Laucou V, Launay A, Bacilieri R, Lacombe T, Adam-Blondon AF, Bérard A, Chauveau A, de Andrés MT, Hausmann L, Ibáñez J, Le Paslier MC, Maghradze D, Martinez-Zapater JM, Maul E, Ponnaiah M, Töpfer R, Péros JP, Boursiquot JM.

PLoS One. 2018 Feb 8;13(2):e0192540. doi: 10.1371/journal.pone.0192540. eCollection 2018.


The LATERAL ORGAN BOUNDARIES Domain gene family in grapevine: genome-wide characterization and expression analyses during developmental processes and stress responses.

Grimplet J, Pimentel D, Agudelo-Romero P, Martinez-Zapater JM, Fortes AM.

Sci Rep. 2017 Nov 21;7(1):15968. doi: 10.1038/s41598-017-16240-5.


Catastrophic Unbalanced Genome Rearrangements Cause Somatic Loss of Berry Color in Grapevine.

Carbonell-Bejerano P, Royo C, Torres-Pérez R, Grimplet J, Fernandez L, Franco-Zorrilla JM, Lijavetzky D, Baroja E, Martínez J, García-Escudero E, Ibáñez J, Martínez-Zapater JM.

Plant Physiol. 2017 Oct;175(2):786-801. doi: 10.1104/pp.17.00715. Epub 2017 Aug 15.


Structural and Functional Analysis of the GRAS Gene Family in Grapevine Indicates a Role of GRAS Proteins in the Control of Development and Stress Responses.

Grimplet J, Agudelo-Romero P, Teixeira RT, Martinez-Zapater JM, Fortes AM.

Front Plant Sci. 2016 Mar 30;7:353. doi: 10.3389/fpls.2016.00353. eCollection 2016.


Expression of grapevine AINTEGUMENTA-like genes is associated with variation in ovary and berry size.

Chialva C, Eichler E, Grissi C, Muñoz C, Gomez-Talquenca S, Martínez-Zapater JM, Lijavetzky D.

Plant Mol Biol. 2016 May;91(1-2):67-80. doi: 10.1007/s11103-016-0443-1. Epub 2016 Feb 2.


Structural and functional annotation of the MADS-box transcription factor family in grapevine.

Grimplet J, Martínez-Zapater JM, Carmona MJ.

BMC Genomics. 2016 Jan 27;17:80. doi: 10.1186/s12864-016-2398-7.


Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae.

Díaz-Riquelme J, Zhurov V, Rioja C, Pérez-Moreno I, Torres-Pérez R, Grimplet J, Carbonell-Bejerano P, Bajda S, Van Leeuwen T, Martínez-Zapater JM, Grbic M, Grbic V.

BMC Genomics. 2016 Jan 22;17:74. doi: 10.1186/s12864-016-2401-3.


Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine.

Tello J, Torres-Pérez R, Grimplet J, Carbonell-Bejerano P, Martínez-Zapater JM, Ibáñez J.

BMC Plant Biol. 2015 Oct 23;15:253. doi: 10.1186/s12870-015-0622-2.


Developmental, transcriptome, and genetic alterations associated with parthenocarpy in the grapevine seedless somatic variant Corinto bianco.

Royo C, Carbonell-Bejerano P, Torres-Pérez R, Nebish A, Martínez Ó, Rey M, Aroutiounian R, Ibáñez J, Martínez-Zapater JM.

J Exp Bot. 2016 Jan;67(1):259-73. doi: 10.1093/jxb/erv452. Epub 2015 Oct 9.


Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea.

Agudelo-Romero P, Erban A, Rego C, Carbonell-Bejerano P, Nascimento T, Sousa L, Martínez-Zapater JM, Kopka J, Fortes AM.

J Exp Bot. 2015 Apr;66(7):1769-85. doi: 10.1093/jxb/eru517. Epub 2015 Feb 11.


Dissecting the transcriptional response to elicitors in Vitis vinifera cells.

Almagro L, Carbonell-Bejerano P, Belchí-Navarro S, Bru R, Martínez-Zapater JM, Lijavetzky D, Pedreño MA.

PLoS One. 2014 Oct 14;9(10):e109777. doi: 10.1371/journal.pone.0109777. eCollection 2014.


Chromatin-dependent repression of the Arabidopsis floral integrator genes involves plant specific PHD-containing proteins.

López-González L, Mouriz A, Narro-Diego L, Bustos R, Martínez-Zapater JM, Jarillo JA, Piñeiro M.

Plant Cell. 2014 Oct;26(10):3922-38. doi: 10.1105/tpc.114.130781. Epub 2014 Oct 3.


Haplotype diversity of VvTFL1A gene and association with cluster traits in grapevine (V. vinifera).

Fernandez L, Le Cunff L, Tello J, Lacombe T, Boursiquot JM, Fournier-Level A, Bravo G, Lalet S, Torregrosa L, This P, Martinez-Zapater JM.

BMC Plant Biol. 2014 Aug 5;14:209. doi: 10.1186/s12870-014-0209-3.


Solar ultraviolet radiation is necessary to enhance grapevine fruit ripening transcriptional and phenolic responses.

Carbonell-Bejerano P, Diago MP, Martínez-Abaigar J, Martínez-Zapater JM, Tardáguila J, Núñez-Olivera E.

BMC Plant Biol. 2014 Jul 9;14:183. doi: 10.1186/1471-2229-14-183.


Relationships among gene expression and anthocyanin composition of Malbec grapevine clones.

Muñoz C, Gomez-Talquenca S, Chialva C, Ibáñez J, Martinez-Zapater JM, Peña-Neira Á, Lijavetzky D.

J Agric Food Chem. 2014 Jul 16;62(28):6716-25. doi: 10.1021/jf501575m. Epub 2014 Jul 1.


Circadian oscillatory transcriptional programs in grapevine ripening fruits.

Carbonell-Bejerano P, Rodríguez V, Royo C, Hernáiz S, Moro-González LC, Torres-Viñals M, Martínez-Zapater JM.

BMC Plant Biol. 2014 Mar 25;14:78. doi: 10.1186/1471-2229-14-78.


Transcriptional analysis of tendril and inflorescence development in grapevine (Vitis vinifera L.).

Díaz-Riquelme J, Martínez-Zapater JM, Carmona MJ.

PLoS One. 2014 Mar 17;9(3):e92339. doi: 10.1371/journal.pone.0092339. eCollection 2014.


The genetic structure of Arabidopsis thaliana in the south-western Mediterranean range reveals a shared history between North Africa and southern Europe.

Brennan AC, Méndez-Vigo B, Haddioui A, Martínez-Zapater JM, Picó FX, Alonso-Blanco C.

BMC Plant Biol. 2014 Jan 10;14:17. doi: 10.1186/1471-2229-14-17.


Thermotolerance responses in ripening berries of Vitis vinifera L. cv Muscat Hamburg.

Carbonell-Bejerano P, Santa María E, Torres-Pérez R, Royo C, Lijavetzky D, Bravo G, Aguirreolea J, Sánchez-Díaz M, Antolín MC, Martínez-Zapater JM.

Plant Cell Physiol. 2013 Jul;54(7):1200-16. doi: 10.1093/pcp/pct071. Epub 2013 May 9.


Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape.

Emanuelli F, Lorenzi S, Grzeskowiak L, Catalano V, Stefanini M, Troggio M, Myles S, Martinez-Zapater JM, Zyprian E, Moreira FM, Grando MS.

BMC Plant Biol. 2013 Mar 7;13:39. doi: 10.1186/1471-2229-13-39.


The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background.

Méndez-Vigo B, Martínez-Zapater JM, Alonso-Blanco C.

PLoS Genet. 2013;9(1):e1003289. doi: 10.1371/journal.pgen.1003289. Epub 2013 Jan 31.


Mis-expression of a PISTILLATA-like MADS box gene prevents fruit development in grapevine.

Fernandez L, Chaïb J, Martinez-Zapater JM, Thomas MR, Torregrosa L.

Plant J. 2013 Mar;73(6):918-28. doi: 10.1111/tpj.12083. Epub 2013 Jan 22.


Transcriptome variation along bud development in grapevine (Vitis vinifera L.).

Díaz-Riquelme J, Grimplet J, Martínez-Zapater JM, Carmona MJ.

BMC Plant Biol. 2012 Oct 5;12:181. doi: 10.1186/1471-2229-12-181.


Berry flesh and skin ripening features in Vitis vinifera as assessed by transcriptional profiling.

Lijavetzky D, Carbonell-Bejerano P, Grimplet J, Bravo G, Flores P, Fenoll J, Hellín P, Oliveros JC, Martínez-Zapater JM.

PLoS One. 2012;7(6):e39547. doi: 10.1371/journal.pone.0039547. Epub 2012 Jun 29. Erratum in: PLoS One. 2012;7(10). doi:10.1371/annotation/fd93800a-3b3c-484d-97a9-190043309e4b.


Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences.

Grimplet J, Van Hemert J, Carbonell-Bejerano P, Díaz-Riquelme J, Dickerson J, Fennell A, Pezzotti M, Martínez-Zapater JM.

BMC Res Notes. 2012 May 3;5:213. doi: 10.1186/1756-0500-5-213.


Novel natural alleles at FLC and LVR loci account for enhanced vernalization responses in Arabidopsis thaliana.

Sánchez-Bermejo E, Méndez-Vigo B, Picó FX, Martínez-Zapater JM, Alonso-Blanco C.

Plant Cell Environ. 2012 Sep;35(9):1672-84. doi: 10.1111/j.1365-3040.2012.02518.x. Epub 2012 May 10.


Genetic diversity of wild grapevine populations in Spain and their genetic relationships with cultivated grapevines.

De Andrés MT, Benito A, Pérez-Rivera G, Ocete R, Lopez MA, Gaforio L, Muñoz G, Cabello F, Martínez Zapater JM, Arroyo-García R.

Mol Ecol. 2012 Feb;21(4):800-16. doi: 10.1111/j.1365-294X.2011.05395.x. Epub 2011 Dec 12.


A 48 SNP set for grapevine cultivar identification.

Cabezas JA, Ibáñez J, Lijavetzky D, Vélez D, Bravo G, Rodríguez V, Carreño I, Jermakow AM, Carreño J, Ruiz-García L, Thomas MR, Martinez-Zapater JM.

BMC Plant Biol. 2011 Nov 8;11:153. doi: 10.1186/1471-2229-11-153.


Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening.

Fortes AM, Agudelo-Romero P, Silva MS, Ali K, Sousa L, Maltese F, Choi YH, Grimplet J, Martinez-Zapater JM, Verpoorte R, Pais MS.

BMC Plant Biol. 2011 Nov 2;11:149. doi: 10.1186/1471-2229-11-149.


Altitudinal and climatic adaptation is mediated by flowering traits and FRI, FLC, and PHYC genes in Arabidopsis.

Méndez-Vigo B, Picó FX, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C.

Plant Physiol. 2011 Dec;157(4):1942-55. doi: 10.1104/pp.111.183426. Epub 2011 Oct 11.


Transcriptome changes in grapevine (Vitis vinifera L.) cv. Malbec leaves induced by ultraviolet-B radiation.

Pontin MA, Piccoli PN, Francisco R, Bottini R, Martinez-Zapater JM, Lijavetzky D.

BMC Plant Biol. 2010 Oct 20;10:224. doi: 10.1186/1471-2229-10-224.


Temporal analysis of natural variation for the rate of leaf production and its relationship with flowering initiation in Arabidopsis thaliana.

Méndez-Vigo B, de Andrés MT, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C.

J Exp Bot. 2010 Jun;61(6):1611-23. doi: 10.1093/jxb/erq032. Epub 2010 Feb 26.


A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis.

Martín B, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C.

BMC Plant Biol. 2009 Dec 14;9:147. doi: 10.1186/1471-2229-9-147.


EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing.

del Olmo I, López-González L, Martín-Trillo MM, Martínez-Zapater JM, Piñeiro M, Jarillo JA.

Plant J. 2010 Feb;61(4):623-36. doi: 10.1111/j.1365-313X.2009.04093.x. Epub 2009 Nov 26.


Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine.

Fernandez L, Torregrosa L, Segura V, Bouquet A, Martinez-Zapater JM.

Plant J. 2010 Feb;61(4):545-57. doi: 10.1111/j.1365-313X.2009.04090.x. Epub 2009 Nov 26.


Chromatin remodeling in plant development.

Jarillo JA, Piñeiro M, Cubas P, Martínez-Zapater JM.

Int J Dev Biol. 2009;53(8-10):1581-96. doi: 10.1387/ijdb.072460jj. Review.


Synergistic effect of methyljasmonate and cyclodextrin on stilbene biosynthesis pathway gene expression and resveratrol production in Monastrell grapevine cell cultures.

Lijavetzky D, Almagro L, Belchi-Navarro S, Martínez-Zapater JM, Bru R, Pedreño MA.

BMC Res Notes. 2008 Dec 22;1:132. doi: 10.1186/1756-0500-1-132.


Genome-wide analysis of MIKCC-type MADS box genes in grapevine.

Díaz-Riquelme J, Lijavetzky D, Martínez-Zapater JM, Carmona MJ.

Plant Physiol. 2009 Jan;149(1):354-69. doi: 10.1104/pp.108.131052. Epub 2008 Nov 7.


Natural genetic variation of Arabidopsis thaliana is geographically structured in the Iberian peninsula.

Picó FX, Méndez-Vigo B, Martínez-Zapater JM, Alonso-Blanco C.

Genetics. 2008 Oct;180(2):1009-21. doi: 10.1534/genetics.108.089581. Epub 2008 Aug 20.


A molecular genetic perspective of reproductive development in grapevine.

Carmona MJ, Chaïb J, Martínez-Zapater JM, Thomas MR.

J Exp Bot. 2008;59(10):2579-96. doi: 10.1093/jxb/ern160. Review.


Characterization of Vitis vinifera L. somatic variants exhibiting abnormal flower development patterns.

Chatelet P, Laucou V, Fernandez L, Sreekantan L, Lacombe T, Martinez-Zapater JM, Thomas MR, Torregrosa L.

J Exp Bot. 2007;58(15-16):4107-18. Epub 2007 Nov 27.


High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.


Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development.

Peng FY, Reid KE, Liao N, Schlosser J, Lijavetzky D, Holt R, Martínez Zapater JM, Jones S, Marra M, Bohlmann J, Lund ST.

Gene. 2007 Nov 1;402(1-2):40-50. Epub 2007 Jul 31.


Quantitative genetic analysis of flowering time in tomato.

Jiménez-Gómez JM, Alonso-Blanco C, Borja A, Anastasio G, Angosto T, Lozano R, Martínez-Zapater JM.

Genome. 2007 Mar;50(3):303-15.


A genetic analysis of seed and berry weight in grapevine.

Cabezas JA, Cervera MT, Ruiz-García L, Carreño J, Martínez-Zapater JM.

Genome. 2006 Dec;49(12):1572-85. Erratum in: Genome. 2009 Feb;52(2):215.


The FT/TFL1 gene family in grapevine.

Carmona MJ, Calonje M, Martínez-Zapater JM.

Plant Mol Biol. 2007 Mar;63(5):637-50. Epub 2006 Dec 10.


Multiple origins of cultivated grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms.

Arroyo-García R, Ruiz-García L, Bolling L, Ocete R, López MA, Arnold C, Ergul A, Söylemezoğlu G, Uzun HI, Cabello F, Ibáñez J, Aradhya MK, Atanassov A, Atanassov I, Balint S, Cenis JL, Costantini L, Goris-Lavets S, Grando MS, Klein BY, McGovern PE, Merdinoglu D, Pejic I, Pelsy F, Primikirios N, Risovannaya V, Roubelakis-Angelakis KA, Snoussi H, Sotiri P, Tamhankar S, This P, Troshin L, Malpica JM, Lefort F, Martinez-Zapater JM.

Mol Ecol. 2006 Oct;15(12):3707-14.


Molecular genetics of berry colour variation in table grape.

Lijavetzky D, Ruiz-García L, Cabezas JA, De Andrés MT, Bravo G, Ibáñez A, Carreño J, Cabello F, Ibáñez J, Martínez-Zapater JM.

Mol Genet Genomics. 2006 Nov;276(5):427-35. Epub 2006 Aug 19.


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