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Oxidoreductases on their way to industrial biotransformations. Martínez AT et al. Biotechnol Adv. (2017)

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Floudas D et al. Science. (2012)

Experimental recreation of the evolution of lignin-degrading enzymes from the Jurassic to date. Ayuso-Fernández I et al. Biotechnol Biofuels. (2017)

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Items: 1 to 50 of 186


Peroxidase evolution in white-rot fungi follows wood lignin evolution in plants.

Ayuso-Fernández I, Rencoret J, Gutiérrez A, Ruiz-Dueñas FJ, Martínez AT.

Proc Natl Acad Sci U S A. 2019 Aug 19. pii: 201905040. doi: 10.1073/pnas.1905040116. [Epub ahead of print]


Different fungal peroxidases oxidize nitrophenols at a surface catalytic tryptophan.

Linde D, Ayuso-Fernández I, Ruiz-Dueñas FJ, Martínez AT.

Arch Biochem Biophys. 2019 Jun 15;668:23-28. doi: 10.1016/ Epub 2019 May 13.


Increase of Redox Potential during the Evolution of Enzymes Degrading Recalcitrant Lignin.

Ayuso-Fernández I, De Lacey AL, Cañada FJ, Ruiz-Dueñas FJ, Martínez AT.

Chemistry. 2019 Feb 21;25(11):2708-2712. doi: 10.1002/chem.201805679. Epub 2019 Jan 25.


A highly stable laccase obtained by swapping the second cupredoxin domain.

Pardo I, Rodríguez-Escribano D, Aza P, de Salas F, Martínez AT, Camarero S.

Sci Rep. 2018 Oct 23;8(1):15669. doi: 10.1038/s41598-018-34008-3.


Evolutionary convergence in lignin-degrading enzymes.

Ayuso-Fernández I, Ruiz-Dueñas FJ, Martínez AT.

Proc Natl Acad Sci U S A. 2018 Jun 19;115(25):6428-6433. doi: 10.1073/pnas.1802555115. Epub 2018 Jun 4.


Multiple implications of an active site phenylalanine in the catalysis of aryl-alcohol oxidase.

Carro J, Amengual-Rigo P, Sancho F, Medina M, Guallar V, Ferreira P, Martínez AT.

Sci Rep. 2018 May 25;8(1):8121. doi: 10.1038/s41598-018-26445-x.


Self-sustained enzymatic cascade for the production of 2,5-furandicarboxylic acid from 5-methoxymethylfurfural.

Carro J, Fernández-Fueyo E, Fernández-Alonso C, Cañada J, Ullrich R, Hofrichter M, Alcalde M, Ferreira P, Martínez AT.

Biotechnol Biofuels. 2018 Apr 2;11:86. doi: 10.1186/s13068-018-1091-2. eCollection 2018.


Stepwise Hydrogen Atom and Proton Transfers in Dioxygen Reduction by Aryl-Alcohol Oxidase.

Carro J, Ferreira P, Martínez AT, Gadda G.

Biochemistry. 2018 Mar 20;57(11):1790-1797. doi: 10.1021/acs.biochem.8b00106. Epub 2018 Mar 5.


Fungal lignin peroxidase does not produce the veratryl alcohol cation radical as a diffusible ligninolytic oxidant.

Houtman CJ, Maligaspe E, Hunt CG, Fernández-Fueyo E, Martínez AT, Hammel KE.

J Biol Chem. 2018 Mar 30;293(13):4702-4712. doi: 10.1074/jbc.RA117.001153. Epub 2018 Feb 9.


Fatty Acid Chain Shortening by a Fungal Peroxygenase.

Olmedo A, Río JCD, Kiebist J, Ullrich R, Hofrichter M, Scheibner K, Martínez AT, Gutiérrez A.

Chemistry. 2017 Dec 1;23(67):16985-16989. doi: 10.1002/chem.201704773. Epub 2017 Nov 20.


Protein dynamics promote hydride tunnelling in substrate oxidation by aryl-alcohol oxidase.

Carro J, Martínez-Júlvez M, Medina M, Martínez AT, Ferreira P.

Phys Chem Chem Phys. 2017 Nov 1;19(42):28666-28675. doi: 10.1039/c7cp05904c.


Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12.

Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, Chen C, LaButti K, Nolan M, Lipzen A, Aerts A, Riley R, Barry K, Henrissat B, Blanchette R, Grigoriev IV, Cullen D.

Genom Data. 2017 Aug 10;14:21-23. doi: 10.1016/j.gdata.2017.08.003. eCollection 2017 Dec. No abstract available.


Oxidoreductases on their way to industrial biotransformations.

Martínez AT, Ruiz-Dueñas FJ, Camarero S, Serrano A, Linde D, Lund H, Vind J, Tovborg M, Herold-Majumdar OM, Hofrichter M, Liers C, Ullrich R, Scheibner K, Sannia G, Piscitelli A, Pezzella C, Sener ME, Kılıç S, van Berkel WJH, Guallar V, Lucas MF, Zuhse R, Ludwig R, Hollmann F, Fernández-Fueyo E, Record E, Faulds CB, Tortajada M, Winckelmann I, Rasmussen JA, Gelo-Pujic M, Gutiérrez A, Del Río JC, Rencoret J, Alcalde M.

Biotechnol Adv. 2017 Nov 1;35(6):815-831. doi: 10.1016/j.biotechadv.2017.06.003. Epub 2017 Jun 15. Review.


Role of surface tryptophan for peroxidase oxidation of nonphenolic lignin.

Sáez-Jiménez V, Rencoret J, Rodríguez-Carvajal MA, Gutiérrez A, Ruiz-Dueñas FJ, Martínez AT.

Biotechnol Biofuels. 2016 Sep 17;9:198. doi: 10.1186/s13068-016-0615-x. eCollection 2016.


Mapping the Long-Range Electron Transfer Route in Ligninolytic Peroxidases.

Acebes S, Ruiz-Dueñas FJ, Toubes M, Sáez-Jiménez V, Pérez-Boada M, Lucas MF, Martínez AT, Guallar V.

J Phys Chem B. 2017 Apr 27;121(16):3946-3954. doi: 10.1021/acs.jpcb.7b00835. Epub 2017 Apr 14.


Experimental recreation of the evolution of lignin-degrading enzymes from the Jurassic to date.

Ayuso-Fernández I, Martínez AT, Ruiz-Dueñas FJ.

Biotechnol Biofuels. 2017 Mar 16;10:67. doi: 10.1186/s13068-017-0744-x. eCollection 2017.


Simulating Substrate Recognition and Oxidation in Laccases: From Description to Design.

Lucas MF, Monza E, Jørgensen LJ, Ernst HA, Piontek K, Bjerrum MJ, Martinez ÁT, Camarero S, Guallar V.

J Chem Theory Comput. 2017 Mar 14;13(3):1462-1467. doi: 10.1021/acs.jctc.6b01158. Epub 2017 Feb 22.


Advanced Synthesis of Conductive Polyaniline Using Laccase as Biocatalyst.

de Salas F, Pardo I, Salavagione HJ, Aza P, Amougi E, Vind J, Martínez AT, Camarero S.

PLoS One. 2016 Oct 14;11(10):e0164958. doi: 10.1371/journal.pone.0164958. eCollection 2016.


From Alkanes to Carboxylic Acids: Terminal Oxygenation by a Fungal Peroxygenase.

Olmedo A, Aranda C, Del Río JC, Kiebist J, Scheibner K, Martínez AT, Gutiérrez A.

Angew Chem Int Ed Engl. 2016 Sep 26;55(40):12248-51. doi: 10.1002/anie.201605430. Epub 2016 Aug 30.


CHEMISTRY. How to break down crystalline cellulose.

Martínez AT.

Science. 2016 May 27;352(6289):1050-1. doi: 10.1126/science.aaf8920. No abstract available.


Unveiling the basis of alkaline stability of an evolved versatile peroxidase.

Sáez-Jiménez V, Acebes S, Garcia-Ruiz E, Romero A, Guallar V, Alcalde M, Medrano FJ, Martínez AT, Ruiz-Dueñas FJ.

Biochem J. 2016 Jul 1;473(13):1917-28. doi: 10.1042/BCJ20160248. Epub 2016 Apr 26.


A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatus.

Fernández-Fueyo E, Ruiz-Dueñas FJ, López-Lucendo MF, Pérez-Boada M, Rencoret J, Gutiérrez A, Pisabarro AG, Ramírez L, Martínez AT.

Biotechnol Biofuels. 2016 Feb 29;9:49. doi: 10.1186/s13068-016-0462-9. eCollection 2016.


Lignin-carbohydrate complexes from sisal (Agave sisalana) and abaca (Musa textilis): chemical composition and structural modifications during the isolation process.

Del Río JC, Prinsen P, Cadena EM, Martínez ÁT, Gutiérrez A, Rencoret J.

Planta. 2016 May;243(5):1143-58. doi: 10.1007/s00425-016-2470-1. Epub 2016 Feb 5.


Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.

Couturier M, Navarro D, Chevret D, Henrissat B, Piumi F, Ruiz-Dueñas FJ, Martinez AT, Grigoriev IV, Riley R, Lipzen A, Berrin JG, Master ER, Rosso MN.

Biotechnol Biofuels. 2015 Dec 18;8:216. doi: 10.1186/s13068-015-0407-8. eCollection 2015.


Demonstration of lignin-to-peroxidase direct electron transfer. A TRANSIENT-STATE KINETICS, DIRECTED MUTAGENESIS, EPR AND NMR STUDY.

Sáez-Jiménez V, Baratto MC, Pogni R, Rencoret J, Gutiérrez A, Santos JI, Martínez AT, Ruiz-Dueñas FJ.

J Biol Chem. 2015 Dec 18;290(51):30268. doi: 10.1074/jbc.A115.665919. No abstract available.


Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase.

Sáez-Jiménez V, Fernández-Fueyo E, Medrano FJ, Romero A, Martínez AT, Ruiz-Dueñas FJ.

PLoS One. 2015 Oct 23;10(10):e0140984. doi: 10.1371/journal.pone.0140984. eCollection 2015. Erratum in: PLoS One. 2015;10(11):e0143267.


A survey of genes encoding H2O2-producing GMC oxidoreductases in 10 Polyporales genomes.

Ferreira P, Carro J, Serrano A, Martínez AT.

Mycologia. 2015 Nov-Dec;107(6):1105-19. doi: 10.3852/15-027. Epub 2015 Aug 21.


Insights into Laccase Engineering from Molecular Simulations: Toward a Binding-Focused Strategy.

Monza E, Lucas MF, Camarero S, Alejaldre LC, Martínez AT, Guallar V.

J Phys Chem Lett. 2015 Apr 16;6(8):1447-53. doi: 10.1021/acs.jpclett.5b00225. Epub 2015 Apr 2.


Demonstration of Lignin-to-Peroxidase Direct Electron Transfer: A TRANSIENT-STATE KINETICS, DIRECTED MUTAGENESIS, EPR, AND NMR STUDY.

Sáez-Jiménez V, Baratto MC, Pogni R, Rencoret J, Gutiérrez A, Santos JI, Martínez AT, Ruiz-Dueñas FJ.

J Biol Chem. 2015 Sep 18;290(38):23201-13. doi: 10.1074/jbc.M115.665919. Epub 2015 Aug 3. Erratum in: J Biol Chem. 2015 Dec 18;290(51):30268.


Focused Directed Evolution of Aryl-Alcohol Oxidase in Saccharomyces cerevisiae by Using Chimeric Signal Peptides.

Viña-Gonzalez J, Gonzalez-Perez D, Ferreira P, Martinez AT, Alcalde M.

Appl Environ Microbiol. 2015 Sep;81(18):6451-62. doi: 10.1128/AEM.01966-15. Epub 2015 Jul 10.


Redox-Active Sites in Auricularia auricula-judae Dye-Decolorizing Peroxidase and Several Directed Variants: A Multifrequency EPR Study.

Baratto MC, Sinicropi A, Linde D, Sáez-Jiménez V, Sorace L, Ruiz-Duenas FJ, Martinez AT, Basosi R, Pogni R.

J Phys Chem B. 2015 Oct 29;119(43):13583-92. doi: 10.1021/acs.jpcb.5b02961. Epub 2015 Jul 9.


Description of the first fungal dye-decolorizing peroxidase oxidizing manganese(II).

Fernández-Fueyo E, Linde D, Almendral D, López-Lucendo MF, Ruiz-Dueñas FJ, Martínez AT.

Appl Microbiol Biotechnol. 2015 Nov;99(21):8927-42. doi: 10.1007/s00253-015-6665-3. Epub 2015 May 13.


Improving the oxidative stability of a high redox potential fungal peroxidase by rational design.

Sáez-Jiménez V, Acebes S, Guallar V, Martínez AT, Ruiz-Dueñas FJ.

PLoS One. 2015 Apr 29;10(4):e0124750. doi: 10.1371/journal.pone.0124750. eCollection 2015.


Steroid hydroxylation by basidiomycete peroxygenases: a combined experimental and computational study.

Babot ED, Del Río JC, Cañellas M, Sancho F, Lucas F, Guallar V, Kalum L, Lund H, Gröbe G, Scheibner K, Ullrich R, Hofrichter M, Martínez AT, Gutiérrez A.

Appl Environ Microbiol. 2015 Jun 15;81(12):4130-42. doi: 10.1128/AEM.00660-15. Epub 2015 Apr 10.


Aromatic stacking interactions govern catalysis in aryl-alcohol oxidase.

Ferreira P, Hernández-Ortega A, Lucas F, Carro J, Herguedas B, Borrelli KW, Guallar V, Martínez AT, Medina M.

FEBS J. 2015 Aug;282(16):3091-106. doi: 10.1111/febs.13221. Epub 2015 Feb 23.


Basidiomycete DyPs: Genomic diversity, structural-functional aspects, reaction mechanism and environmental significance.

Linde D, Ruiz-Dueñas FJ, Fernández-Fueyo E, Guallar V, Hammel KE, Pogni R, Martínez AT.

Arch Biochem Biophys. 2015 May 15;574:66-74. doi: 10.1016/ Epub 2015 Jan 28. Review.


Isolation and structural characterization of the milled wood lignin, dioxane lignin, and cellulolytic lignin preparations from brewer's spent grain.

Rencoret J, Prinsen P, Gutiérrez A, Martínez ÁT, Del Río JC.

J Agric Food Chem. 2015 Jan 21;63(2):603-13. doi: 10.1021/jf505808c. Epub 2015 Jan 7.


5-hydroxymethylfurfural conversion by fungal aryl-alcohol oxidase and unspecific peroxygenase.

Carro J, Ferreira P, Rodríguez L, Prieto A, Serrano A, Balcells B, Ardá A, Jiménez-Barbero J, Gutiérrez A, Ullrich R, Hofrichter M, Martínez AT.

FEBS J. 2015 Aug;282(16):3218-29. doi: 10.1111/febs.13177. Epub 2015 Jan 8.


Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study.

Linde D, Pogni R, Cañellas M, Lucas F, Guallar V, Baratto MC, Sinicropi A, Sáez-Jiménez V, Coscolín C, Romero A, Medrano FJ, Ruiz-Dueñas FJ, Martínez AT.

Biochem J. 2015 Mar 1;466(2):253-62. doi: 10.1042/BJ20141211.


Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi.

Fernández-Fueyo E, Acebes S, Ruiz-Dueñas FJ, Martínez MJ, Romero A, Medrano FJ, Guallar V, Martínez AT.

Acta Crystallogr D Biol Crystallogr. 2014 Dec 1;70(Pt 12):3253-65. doi: 10.1107/S1399004714022755. Epub 2014 Nov 22.


Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood.

Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Dueñas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, Kersten P, St John F, Glasner J, Sabat G, Splinter BonDurant S, Syed K, Yadav J, Mgbeahuruike AC, Kovalchuk A, Asiegbu FO, Lackner G, Hoffmeister D, Rencoret J, Gutiérrez A, Sun H, Lindquist E, Barry K, Riley R, Grigoriev IV, Henrissat B, Kües U, Berka RM, Martínez AT, Covert SF, Blanchette RA, Cullen D.

PLoS Genet. 2014 Dec 4;10(12):e1004759. doi: 10.1371/journal.pgen.1004759. eCollection 2014 Dec.


Heterologous expression and physicochemical characterization of a fungal dye-decolorizing peroxidase from Auricularia auricula-judae.

Linde D, Coscolín C, Liers C, Hofrichter M, Martínez AT, Ruiz-Dueñas FJ.

Protein Expr Purif. 2014 Nov;103:28-37. doi: 10.1016/j.pep.2014.08.007. Epub 2014 Aug 18.


Enzymatic degradation of Elephant grass (Pennisetum purpureum) stems: influence of the pith and bark in the total hydrolysis.

Pérez-Boada M, Prieto A, Prinsen P, Forquin-Gomez MP, del Río JC, Gutiérrez A, Martínez ÁT, Faulds CB.

Bioresour Technol. 2014 Sep;167:469-75. doi: 10.1016/j.biortech.2014.06.018. Epub 2014 Jun 24.


The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.


Wood and humus decay strategies by white-rot basidiomycetes correlate with two different dye decolorization and enzyme secretion patterns on agar plates.

Barrasa JM, Blanco MN, Esteve-Raventós F, Altés A, Checa J, Martínez AT, Ruiz-Dueñas FJ.

Fungal Genet Biol. 2014 Nov;72:106-114. doi: 10.1016/j.fgb.2014.03.007. Epub 2014 Apr 12.


Ligninolytic peroxidase gene expression by Pleurotus ostreatus: differential regulation in lignocellulose medium and effect of temperature and pH.

Fernández-Fueyo E, Castanera R, Ruiz-Dueñas FJ, López-Lucendo MF, Ramírez L, Pisabarro AG, Martínez AT.

Fungal Genet Biol. 2014 Nov;72:150-161. doi: 10.1016/j.fgb.2014.02.003. Epub 2014 Feb 18.


Analysis of lignin-carbohydrate and lignin-lignin linkages after hydrolase treatment of xylan-lignin, glucomannan-lignin and glucan-lignin complexes from spruce wood.

Du X, Pérez-Boada M, Fernández C, Rencoret J, del Río JC, Jiménez-Barbero J, Li J, Gutiérrez A, Martínez AT.

Planta. 2014 May;239(5):1079-90. doi: 10.1007/s00425-014-2037-y. Epub 2014 Feb 15.


Pretreatment with laccase and a phenolic mediator degrades lignin and enhances saccharification of Eucalyptus feedstock.

Rico A, Rencoret J, Del Río JC, Martínez AT, Gutiérrez A.

Biotechnol Biofuels. 2014 Jan 8;7(1):6. doi: 10.1186/1754-6834-7-6.


Ligninolytic peroxidase genes in the oyster mushroom genome: heterologous expression, molecular structure, catalytic and stability properties, and lignin-degrading ability.

Fernández-Fueyo E, Ruiz-Dueñas FJ, Martínez MJ, Romero A, Hammel KE, Medrano FJ, Martínez AT.

Biotechnol Biofuels. 2014 Jan 3;7(1):2. doi: 10.1186/1754-6834-7-2.


Engineering a fungal peroxidase that degrades lignin at very acidic pH.

Fernández-Fueyo E, Ruiz-Dueñas FJ, Martínez AT.

Biotechnol Biofuels. 2014 Jul 24;7:114. doi: 10.1186/1754-6834-7-114. eCollection 2014.

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