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The Methylome of Vertebrate Sex Chromosomes.

Waters SA, Capraro A, McIntyre KL, Marshall Graves JA, Waters PD.

Genes (Basel). 2018 May 1;9(5). pii: E230. doi: 10.3390/genes9050230. Review.


Landscape of DNA Methylation on the Marsupial X.

Waters SA, Livernois AM, Patel H, O'Meally D, Craig JM, Marshall Graves JA, Suter CM, Waters PD.

Mol Biol Evol. 2018 Feb 1;35(2):431-439. doi: 10.1093/molbev/msx297.


Differential intron retention in Jumonji chromatin modifier genes is implicated in reptile temperature-dependent sex determination.

Deveson IW, Holleley CE, Blackburn J, Marshall Graves JA, Mattick JS, Waters PD, Georges A.

Sci Adv. 2017 Jun 14;3(6):e1700731. doi: 10.1126/sciadv.1700731. eCollection 2017 Jun.


Sex reversal triggers the rapid transition from genetic to temperature-dependent sex.

Holleley CE, O'Meally D, Sarre SD, Marshall Graves JA, Ezaz T, Matsubara K, Azad B, Zhang X, Georges A.

Nature. 2015 Jul 2;523(7558):79-82. doi: 10.1038/nature14574.


Major Histocompatibility Complex Genes Map to Two Chromosomes in an Evolutionarily Ancient Reptile, the Tuatara Sphenodon punctatus.

Miller HC, O'Meally D, Ezaz T, Amemiya C, Marshall-Graves JA, Edwards S.

G3 (Bethesda). 2015 May 7;5(7):1439-51. doi: 10.1534/g3.115.017467.


Pathogenesis and molecular biology of a transmissible tumor in the Tasmanian devil.

Bender HS, Marshall Graves JA, Deakin JE.

Annu Rev Anim Biosci. 2014 Feb;2:165-87. doi: 10.1146/annurev-animal-022513-114204. Epub 2013 Nov 18. Review.


Highly differentiated ZW sex microchromosomes in the Australian Varanus species evolved through rapid amplification of repetitive sequences.

Matsubara K, Sarre SD, Georges A, Matsuda Y, Marshall Graves JA, Ezaz T.

PLoS One. 2014 Apr 17;9(4):e95226. doi: 10.1371/journal.pone.0095226. eCollection 2014.


Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1.

Ezaz T, Azad B, O'Meally D, Young MJ, Matsubara K, Edwards MJ, Zhang X, Holleley CE, Deakin JE, Marshall Graves JA, Georges A, Edwards SV, Sarre SD.

BMC Genomics. 2013 Dec 17;14:899. doi: 10.1186/1471-2164-14-899.


Independent evolution of transcriptional inactivation on sex chromosomes in birds and mammals.

Livernois AM, Waters SA, Deakin JE, Marshall Graves JA, Waters PD.

PLoS Genet. 2013;9(7):e1003635. doi: 10.1371/journal.pgen.1003635. Epub 2013 Jul 18.


A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii).

Wang C, Webley L, Wei KJ, Wakefield MJ, Patel HR, Deakin JE, Alsop A, Marshall Graves JA, Cooper DW, Nicholas FW, Zenger KR.

BMC Genet. 2011 Aug 19;12:72. doi: 10.1186/1471-2156-12-72.


A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map.

Wang C, Deakin JE, Rens W, Zenger KR, Belov K, Marshall Graves JA, Nicholas FW.

BMC Genomics. 2011 Aug 19;12:422. doi: 10.1186/1471-2164-12-422.


Evolutionary transitions between mechanisms of sex determination in vertebrates.

Quinn AE, Sarre SD, Ezaz T, Marshall Graves JA, Georges A.

Biol Lett. 2011 Jun 23;7(3):443-8. doi: 10.1098/rsbl.2010.1126. Epub 2011 Jan 6.


Non-homologous sex chromosomes of birds and snakes share repetitive sequences.

O'Meally D, Patel HR, Stiglec R, Sarre SD, Georges A, Marshall Graves JA, Ezaz T.

Chromosome Res. 2010 Nov;18(7):787-800. doi: 10.1007/s10577-010-9152-9. Epub 2010 Aug 24.


Are homologies in vertebrate sex determination due to shared ancestry or to limited options?

Marshall Graves JA, Peichel CL.

Genome Biol. 2010;11(4):205. doi: 10.1186/gb-2010-11-4-205. Epub 2010 Apr 30. Review.


The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer.

Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT.

Science. 2010 Jan 1;327(5961):84-7. doi: 10.1126/science.1180616.


The ZW sex microchromosomes of an Australian dragon lizard share no homology with those of other reptiles or birds.

Ezaz T, Moritz B, Waters P, Marshall Graves JA, Georges A, Sarre SD.

Chromosome Res. 2009;17(8):965-73. doi: 10.1007/s10577-009-9102-6. Epub 2009 Dec 5.


Monotreme sex chromosomes--implications for the evolution of amniote sex chromosomes.

Waters PD, Marshall Graves JA.

Reprod Fertil Dev. 2009;21(8):943-51. doi: 10.1071/RD09250. Review.


Unravelling the evolutionary origins of X chromosome inactivation in mammals: insights from marsupials and monotremes.

Deakin JE, Chaumeil J, Hore TA, Marshall Graves JA.

Chromosome Res. 2009;17(5):671-85. doi: 10.1007/s10577-009-9058-6.


Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28.

Delbridge ML, Patel HR, Waters PD, McMillan DA, Marshall Graves JA.

Genome Res. 2009 Aug;19(8):1350-60. doi: 10.1101/gr.088625.108. Epub 2009 May 13.


A simple non-invasive protocol to establish primary cell lines from tail and toe explants for cytogenetic studies in Australian dragon lizards (Squamata: Agamidae).

Ezaz T, O'Meally D, Quinn AE, Sarre SD, Georges A, Marshall Graves JA.

Cytotechnology. 2008 Nov;58(3):135-9. doi: 10.1007/s10616-009-9182-3. Epub 2009 Feb 6.


Weird animal genomes and the evolution of vertebrate sex and sex chromosomes.

Marshall Graves JA.

Annu Rev Genet. 2008;42:565-86. doi: 10.1146/annurev.genet.42.110807.091714. Review.


Recombination and nucleotide diversity in the sex chromosomal pseudoautosomal region of the emu, Dromaius novaehollandiae.

Janes DE, Ezaz T, Marshall Graves JA, Edwards SV.

J Hered. 2009 Mar-Apr;100(2):125-36. doi: 10.1093/jhered/esn065. Epub 2008 Sep 4.


The evolution of epigenetic regulators CTCF and BORIS/CTCFL in amniotes.

Hore TA, Deakin JE, Marshall Graves JA.

PLoS Genet. 2008 Aug 29;4(8):e1000169. doi: 10.1371/journal.pgen.1000169.


An XX/XY heteromorphic sex chromosome system in the Australian chelid turtle Emydura macquarii: a new piece in the puzzle of sex chromosome evolution in turtles.

Martinez PA, Ezaz T, Valenzuela N, Georges A, Marshall Graves JA.

Chromosome Res. 2008;16(6):815-25. doi: 10.1007/s10577-008-1228-4. Epub 2008 Aug 9.


The status of dosage compensation in the multiple X chromosomes of the platypus.

Deakin JE, Hore TA, Koina E, Marshall Graves JA.

PLoS Genet. 2008 Jul 25;4(7):e1000140. doi: 10.1371/journal.pgen.1000140.


Identification of cryptic sex chromosomes and isolation of X- and Y-borne genes.

Waters PD, Marshall Graves JA, Thompson K, Sankovic N, Ezaz T.

Methods Mol Biol. 2008;422:239-51. doi: 10.1007/978-1-59745-581-7_15.


Genome analysis of the platypus reveals unique signatures of evolution.

Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AF, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ES, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux JL, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, de Jong PJ, Renfree MB, Mardis ER, Wilson RK.

Nature. 2008 May 8;453(7192):175-83. doi: 10.1038/nature06936. Erratum in: Nature. 2008 Sep 11;455(7210):256. Nefedov, Mikhail [added]; de Jong, Pieter J [added].


Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes.

Veyrunes F, Waters PD, Miethke P, Rens W, McMillan D, Alsop AE, Grützner F, Deakin JE, Whittington CM, Schatzkamer K, Kremitzki CL, Graves T, Ferguson-Smith MA, Warren W, Marshall Graves JA.

Genome Res. 2008 Jun;18(6):965-73. doi: 10.1101/gr.7101908. Epub 2008 May 7.


Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.

Kirby PJ, Greaves IK, Koina E, Waters PD, Marshall Graves JA.

Chromosome Res. 2007;15(8):975-84. doi: 10.1007/s10577-007-1187-1. Epub 2008 Jan 9.


Frequency of cancer genes on the chicken z chromosome and its human homologues: implications for sex chromosome evolution.

Stiglec R, Kohn M, Fong J, Ezaz T, Hameister H, Marshall Graves JA.

Comp Funct Genomics. 2007:43070. Epub 2007 Jan 8.


Retrotransposon silencing by DNA methylation can drive mammalian genomic imprinting.

Suzuki S, Ono R, Narita T, Pask AJ, Shaw G, Wang C, Kohda T, Alsop AE, Marshall Graves JA, Kohara Y, Ishino F, Renfree MB, Kaneko-Ishino T.

PLoS Genet. 2007 Apr 13;3(4):e55.


Mammalian sex--Origin and evolution of the Y chromosome and SRY.

Waters PD, Wallis MC, Marshall Graves JA.

Semin Cell Dev Biol. 2007 Jun;18(3):389-400. Epub 2007 Feb 24. Review.


The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals.

Hore TA, Koina E, Wakefield MJ, Marshall Graves JA.

Chromosome Res. 2007;15(2):147-61. Epub 2007 Mar 5.


Recruitment of old genes to new functions: evidences obtained by comparing the orthologues of human XLMR genes in mouse and chicken.

Kohn M, Kehrer-Sawatzki H, Steinbach P, Marshall Graves JA, Hameister H.

Cytogenet Genome Res. 2007;116(3):173-80.


Construction of a highly enriched marsupial Y chromosome-specific BAC sub-library using isolated Y chromosomes.

Sankovic N, Delbridge ML, Grützner F, Ferguson-Smith MA, O'Brien PC, Marshall Graves JA.

Chromosome Res. 2006;14(6):657-64. Epub 2006 Sep 14.


DMRT gene cluster analysis in the platypus: new insights into genomic organization and regulatory regions.

El-Mogharbel N, Wakefield M, Deakin JE, Tsend-Ayush E, Grützner F, Alsop A, Ezaz T, Marshall Graves JA.

Genomics. 2007 Jan;89(1):10-21. Epub 2006 Sep 7.


Relationships between vertebrate ZW and XY sex chromosome systems.

Ezaz T, Stiglec R, Veyrunes F, Marshall Graves JA.

Curr Biol. 2006 Sep 5;16(17):R736-43. Review.


The X and Y chromosomes assemble into H2A.Z-containing [corrected] facultative heterochromatin [corrected] following meiosis.

Greaves IK, Rangasamy D, Devoy M, Marshall Graves JA, Tremethick DJ.

Mol Cell Biol. 2006 Jul;26(14):5394-405. Erratum in: Mol Cell Biol. 2006 Oct;26(19):7343.


How did the platypus get its sex chromosome chain? A comparison of meiotic multiples and sex chromosomes in plants and animals.

Gruetzner F, Ashley T, Rowell DM, Marshall Graves JA.

Chromosoma. 2006 Apr;115(2):75-88. Epub 2005 Dec 13. Review.


The dragon lizard Pogona vitticeps has ZZ/ZW micro-sex chromosomes.

Ezaz T, Quinn AE, Miura I, Sarre SD, Georges A, Marshall Graves JA.

Chromosome Res. 2005;13(8):763-76. Epub 2005 Dec 8.


Isolation, X location and activity of the marsupial homologue of SLC16A2, an XIST-flanking gene in eutherian mammals.

Koina E, Wakefield MJ, Walcher C, Disteche CM, Whitehead S, Ross M, Marshall Graves JA.

Chromosome Res. 2005;13(7):687-98. Epub 2005 Oct 24.


Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby).

Alsop AE, Miethke P, Rofe R, Koina E, Sankovic N, Deakin JE, Haines H, Rapkins RW, Marshall Graves JA.

Chromosome Res. 2005;13(6):627-36. Epub 2005 Sep 21.


The mammalian alphaD-globin gene lineage and a new model for the molecular evolution of alpha-globin gene clusters at the stem of the mammalian radiation.

Cooper SJ, Wheeler D, De Leo A, Cheng JF, Holland RA, Marshall Graves JA, Hope RM.

Mol Phylogenet Evol. 2006 Feb;38(2):439-48. Epub 2005 Jul 15.


RBMX gene is essential for brain development in zebrafish.

Tsend-Ayush E, O'Sullivan LA, Grützner FS, Onnebo SM, Lewis RS, Delbridge ML, Marshall Graves JA, Ward AC.

Dev Dyn. 2005 Nov;234(3):682-8.


The prion protein gene: identifying regulatory signals using marsupial sequence.

Premzl M, Delbridge M, Gready JE, Wilson P, Johnson M, Davis J, Kuczek E, Marshall Graves JA.

Gene. 2005 Apr 11;349:121-34.


In the platypus a meiotic chain of ten sex chromosomes shares genes with the bird Z and mammal X chromosomes.

Grützner F, Rens W, Tsend-Ayush E, El-Mogharbel N, O'Brien PC, Jones RC, Ferguson-Smith MA, Marshall Graves JA.

Nature. 2004 Dec 16;432(7019):913-7. Epub 2004 Oct 24.


ATRX and sex differentiation.

Tang P, Park DJ, Marshall Graves JA, Harley VR.

Trends Endocrinol Metab. 2004 Sep;15(7):339-44. Review.


Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.


TSPY, the candidate gonadoblastoma gene on the human Y chromosome, has a widely expressed homologue on the X - implications for Y chromosome evolution.

Delbridge ML, Longepied G, Depetris D, Mattei MG, Disteche CM, Marshall Graves JA, Mitchell MJ.

Chromosome Res. 2004;12(4):345-56.


Universal fast walking applied to cDNA.

Park DJ, Renfree MB, Marshall Graves JA.

Prep Biochem Biotechnol. 2004 May;34(2):123-33.


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