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Statistical inference for net benefit measures in biomarker validation studies.

Marsh TL, Janes H, Pepe MS.

Biometrics. 2019 Nov 16. doi: 10.1111/biom.13190. [Epub ahead of print]


A Rational Explanation of Limited FMD Vaccine Uptake in Endemic Regions.

Railey AF, Marsh TL.

Pathogens. 2019 Oct 10;8(4). pii: E181. doi: 10.3390/pathogens8040181.


Why isn't everyone using the thermotolerant vaccine? Preferences for Newcastle disease vaccines by chicken-owning households in Tanzania.

Campbell ZA, Thumbi SM, Marsh TL, Quinlan MB, Shirima GM, Palmer GH.

PLoS One. 2019 Aug 15;14(8):e0220963. doi: 10.1371/journal.pone.0220963. eCollection 2019.


Shedding of the Salmonid Herpesvirus-3 by Infected Lake Trout (Salvelinus namaycush).

Faisal M, Purbayu M, Shavalier MA, Marsh TL, Loch TP.

Viruses. 2019 Jun 26;11(7). pii: E580. doi: 10.3390/v11070580.


A One-Year Introductory Biology Majors' Lab Sequence Incorporating Vision & Change.

Guenther MF, Raimondi SL, Marsh TL.

J Microbiol Biol Educ. 2019 Apr 26;20(1). pii: 20.1.11. doi: 10.1128/jmbe.v20i1.1636. eCollection 2019.


The Importance of Uncertainty and Opt-In v. Opt-Out: Best Practices for Decision Curve Analysis.

Kerr KF, Marsh TL, Janes H.

Med Decis Making. 2019 Jul;39(5):491-492. doi: 10.1177/0272989X19849436. Epub 2019 May 20. No abstract available.


18S rRNA metabarcoding diet analysis of a predatory fish community across seasonal changes in prey availability.

Waraniak JM, Marsh TL, Scribner KT.

Ecol Evol. 2019 Jan 10;9(3):1410-1430. doi: 10.1002/ece3.4857. eCollection 2019 Feb.


Biotechnology to sustainability: Consumer preferences for food products grown on biodegradable mulches.

Chen KJ, Marsh TL, Tozer PR, Galinato SP.

Food Res Int. 2019 Feb;116:200-210. doi: 10.1016/j.foodres.2018.08.013. Epub 2018 Aug 10.


Assessing the Clinical Impact of Risk Models for Opting Out of Treatment.

Kerr KF, Brown MD, Marsh TL, Janes H.

Med Decis Making. 2019 Feb;39(2):86-90. doi: 10.1177/0272989X18819479. Epub 2019 Jan 16.


Drivers of vaccination preferences to protect a low-value livestock resource: Willingness to pay for Newcastle disease vaccines by smallholder households.

Campbell ZA, Otieno L, Shirima GM, Marsh TL, Palmer GH.

Vaccine. 2019 Jan 3;37(1):11-18. doi: 10.1016/j.vaccine.2018.11.058. Epub 2018 Nov 23.


Newcastle disease vaccine adoption by smallholder households in Tanzania: Identifying determinants and barriers.

Campbell ZA, Marsh TL, Mpolya EA, Thumbi SM, Palmer GH.

PLoS One. 2018 Oct 24;13(10):e0206058. doi: 10.1371/journal.pone.0206058. eCollection 2018.


Development of the Tonsil Microbiome in Pigs and Effects of Stress on the Microbiome.

Pena Cortes LC, LeVeque RM, Funk JA, Marsh TL, Mulks MH.

Front Vet Sci. 2018 Sep 19;5:220. doi: 10.3389/fvets.2018.00220. eCollection 2018.


Waves of endemic foot-and-mouth disease in eastern Africa suggest feasibility of proactive vaccination approaches.

Casey-Bryars M, Reeve R, Bastola U, Knowles NJ, Auty H, Bachanek-Bankowska K, Fowler VL, Fyumagwa R, Kazwala R, Kibona T, King A, King DP, Lankester F, Ludi AB, Lugelo A, Maree FF, Mshanga D, Ndhlovu G, Parekh K, Paton DJ, Perry B, Wadsworth J, Parida S, Haydon DT, Marsh TL, Cleaveland S, Lembo T.

Nat Ecol Evol. 2018 Sep;2(9):1449-1457. doi: 10.1038/s41559-018-0636-x. Epub 2018 Aug 6.


Spatial and temporal risk as drivers for adoption of foot and mouth disease vaccination.

Railey AF, Lembo T, Palmer GH, Shirima GM, Marsh TL.

Vaccine. 2018 Aug 9;36(33):5077-5083. doi: 10.1016/j.vaccine.2018.06.069. Epub 2018 Jul 6.


Development of the tonsillar microbiome in pigs from newborn through weaning.

Pena Cortes LC, LeVeque RM, Funk J, Marsh TL, Mulks MH.

BMC Microbiol. 2018 Apr 16;18(1):35. doi: 10.1186/s12866-018-1176-x.


Effect of dietary prebiotics and probiotics on snakehead (Channa striata) health: Haematology and disease resistance parameters against Aeromonas hydrophila.

Munir MB, Hashim R, Nor SAM, Marsh TL.

Fish Shellfish Immunol. 2018 Apr;75:99-108. doi: 10.1016/j.fsi.2018.02.005. Epub 2018 Feb 3.


Animal health economics: an aid to decisionmaking on animal health interventions - case studies in the United States of America.

Marsh TL, Pendell D, Knippenberg R.

Rev Sci Tech. 2017 Apr;36(1):137-145. doi: 10.20506/rst.36.1.2617. Review.


Antagonistic Interactions and Biofilm Forming Capabilities Among Bacterial Strains Isolated from the Egg Surfaces of Lake Sturgeon (Acipenser fulvescens).

Fujimoto M, Lovett B, Angoshtari R, Nirenberg P, Loch TP, Scribner KT, Marsh TL.

Microb Ecol. 2018 Jan;75(1):22-37. doi: 10.1007/s00248-017-1013-z. Epub 2017 Jul 3.


Livestock vaccinations translate into increased human capital and school attendance by girls.

Marsh TL, Yoder J, Deboch T, McElwain TF, Palmer GH.

Sci Adv. 2016 Dec 14;2(12):e1601410. eCollection 2016 Dec.


Validation of Models Used to Inform Colorectal Cancer Screening Guidelines: Accuracy and Implications.

Rutter CM, Knudsen AB, Marsh TL, Doria-Rose VP, Johnson E, Pabiniak C, Kuntz KM, van Ballegooijen M, Zauber AG, Lansdorp-Vogelaar I.

Med Decis Making. 2016 Jul;36(5):604-14. doi: 10.1177/0272989X15622642. Epub 2016 Jan 8.


Intestinal microbial communities associated with acute enteric infections and disease recovery.

Singh P, Teal TK, Marsh TL, Tiedje JM, Mosci R, Jernigan K, Zell A, Newton DW, Salimnia H, Lephart P, Sundin D, Khalife W, Britton RA, Rudrik JT, Manning SD.

Microbiome. 2015 Sep 22;3:45. doi: 10.1186/s40168-015-0109-2.


Economic Assessment of FMDv Releases from the National Bio and Agro Defense Facility.

Pendell DL, Marsh TL, Coble KH, Lusk JL, Szmania SC.

PLoS One. 2015 Jun 26;10(6):e0129134. doi: 10.1371/journal.pone.0129134. eCollection 2015.


When Do Students "Learn-to-Comprehend" Scientific Sources?: Evaluation of a Critical Skill in Undergraduates Progressing through a Science Major.

Marsh TL, Guenther MF, Raimondi SL.

J Microbiol Biol Educ. 2015 May 1;16(1):13-20. doi: 10.1128/jmbe.v16i1.828. eCollection 2015 May.


Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

Negassa WC, Guber AK, Kravchenko AN, Marsh TL, Hildebrandt B, Rivers ML.

PLoS One. 2015 Apr 24;10(4):e0123999. doi: 10.1371/journal.pone.0123999. eCollection 2015.


Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, Zhou J.

Appl Environ Microbiol. 2015 Jun 15;81(12):4164-72. doi: 10.1128/AEM.00043-15. Epub 2015 Apr 10.


Linking human health and livestock health: a "one-health" platform for integrated analysis of human health, livestock health, and economic welfare in livestock dependent communities.

Thumbi SM, Njenga MK, Marsh TL, Noh S, Otiang E, Munyua P, Ochieng L, Ogola E, Yoder J, Audi A, Montgomery JM, Bigogo G, Breiman RF, Palmer GH, McElwain TF.

PLoS One. 2015 Mar 23;10(3):e0120761. doi: 10.1371/journal.pone.0120761. eCollection 2015.


Analysis of bacterial communities associated with the benthic amphipod Diporeia in the Laurentian Great Lakes Basin.

Winters AD, Marsh TL, Brenden TO, Faisal M.

Can J Microbiol. 2015 Jan;61(1):72-81. doi: 10.1139/cjm-2014-0434.


Economic Assessment of Zoonotic Diseases: An Illustrative Study of Rift Valley Fever in the United States.

Pendell DL, Lusk JL, Marsh TL, Coble KH, Szmania SC.

Transbound Emerg Dis. 2016 Apr;63(2):203-14. doi: 10.1111/tbed.12246. Epub 2014 Jul 23.


Bacterial community dynamics during industrial malting, with an emphasis on lactic acid bacteria.

Justé A, Malfliet S, Waud M, Crauwels S, De Cooman L, Aerts G, Marsh TL, Ruyters S, Willems K, Busschaert P, Lievens B.

Food Microbiol. 2014 May;39:39-46. doi: 10.1016/ Epub 2013 Nov 7.


Microbial community assembly and succession on lake sturgeon egg surfaces as a function of simulated spawning stream flow rate.

Fujimoto M, Crossman JA, Scribner KT, Marsh TL.

Microb Ecol. 2013 Oct;66(3):500-11. doi: 10.1007/s00248-013-0256-6. Epub 2013 Jul 16.


Diversity of fish-associated flavobacteria of Michigan.

Loch TP, Fujimoto M, Woodiga SA, Walker ED, Marsh TL, Faisal M.

J Aquat Anim Health. 2013 Sep;25(3):149-64. doi: 10.1080/08997659.2012.758189.


Endogenously determined cycles: empirical evidence from livestock industries.

McCullough MP, Huffaker R, Marsh TL.

Nonlinear Dynamics Psychol Life Sci. 2012 Apr;16(2):205-31.


Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction.

Kim SH, Harzman C, Davis JK, Hutcheson R, Broderick JB, Marsh TL, Tiedje JM.

BMC Microbiol. 2012 Feb 8;12:21. doi: 10.1186/1471-2180-12-21.


Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs.

Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.

BMC Microbiol. 2012 Feb 7;12:20. doi: 10.1186/1471-2180-12-20.


Use of primer selection and restriction enzymes to assess bacterial community diversity in an agricultural soil used for potato production via terminal restriction fragment length polymorphism.

Fortuna AM, Marsh TL, Honeycutt CW, Halteman WA.

Appl Microbiol Biotechnol. 2011 Aug;91(4):1193-202. doi: 10.1007/s00253-011-3363-7. Epub 2011 Jun 12.


Dynamics of microbial community composition and function during in situ bioremediation of a uranium-contaminated aquifer.

Van Nostrand JD, Wu L, Wu WM, Huang Z, Gentry TJ, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou J.

Appl Environ Microbiol. 2011 Jun;77(11):3860-9. doi: 10.1128/AEM.01981-10. Epub 2011 Apr 15. Erratum in: Appl Environ Microbiol. 2011 Jul;77(14):5063.


Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach.

Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, Tiedje JM.

Appl Environ Microbiol. 2010 Oct;76(20):6778-86. doi: 10.1128/AEM.01097-10. Epub 2010 Aug 20.


Microbial communities in the tonsils of healthy pigs.

Lowe BA, Marsh TL, Isaacs-Cosgrove N, Kirkwood RN, Kiupel M, Mulks MH.

Vet Microbiol. 2011 Jan 27;147(3-4):346-57. doi: 10.1016/j.vetmic.2010.06.025. Epub 2010 Jul 1.


Biosequestration via cooperative binding of copper by Ralstonia pickettii.

Yang F, Pecina DA, Kelly SD, Kim SH, Kemner KM, Long DT, Marsh TL.

Environ Technol. 2010 Jul-Aug;31(8-9):1045-60. doi: 10.1080/09593330.2010.487290.


Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation.

Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, Hazen T, Criddle CS, Zhou J.

ISME J. 2010 Aug;4(8):1060-70. doi: 10.1038/ismej.2010.31. Epub 2010 Mar 18.


Fecal bacterial diversity of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) at Mahale Mountains National Park, Western Tanzania.

Szekely BA, Singh J, Marsh TL, Hagedorn C, Werre SR, Kaur T.

Am J Primatol. 2010 Jun;72(7):566-74. doi: 10.1002/ajp.20809.


Uranium transformations in static microcosms.

Kelly SD, Wu WM, Yang F, Criddle CS, Marsh TL, O'Loughlin EJ, Ravel B, Watson D, Jardine PM, Kemner KM.

Environ Sci Technol. 2010 Jan 1;44(1):236-42. doi: 10.1021/es902191s.


Assessment of intraradicular bacterial composition by terminal restriction fragment length polymorphism analysis.

Saito D, Marsh TL, de Souza Cannavan F, Höfling JF, Gonçalves RB.

Oral Microbiol Immunol. 2009 Oct;24(5):369-76. doi: 10.1111/j.1399-302X.2009.00525.x.


GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer.

Van Nostrand JD, Wu WM, Wu L, Deng Y, Carley J, Carroll S, He Z, Gu B, Luo J, Criddle CS, Watson DB, Jardine PM, Marsh TL, Tiedje JM, Hazen TC, Zhou J.

Environ Microbiol. 2009 Oct;11(10):2611-26. doi: 10.1111/j.1462-2920.2009.01986.x. Epub 2009 Jul 14.


Bacterial and archaeal phylogenetic diversity of a cold sulfur-rich spring on the shoreline of Lake Erie, Michigan.

Chaudhary A, Haack SK, Duris JW, Marsh TL.

Appl Environ Microbiol. 2009 Aug;75(15):5025-36. doi: 10.1128/AEM.00112-09. Epub 2009 Jun 19.


Changes in land use alter the structure of bacterial communities in Western Amazon soils.

da C Jesus E, Marsh TL, Tiedje JM, de S Moreira FM.

ISME J. 2009 Sep;3(9):1004-11. doi: 10.1038/ismej.2009.47. Epub 2009 May 14. Erratum in: ISME J. 2009 Oct;3(10):1222.


The science of salsa: antimicrobial properties of salsa components to learn scientific methodology.

Marsh TL, Arriola PE.

J Microbiol Biol Educ. 2009 Dec 17;10(1):3-8. Print 2009.


Development of a DNA macroarray for monitoring microbial population dynamics during sugar thick juice storage.

Justé A, Frans I, Klingeberg M, Lievens B, Michiels CW, Marsh TL, Willems KA.

Commun Agric Appl Biol Sci. 2008;73(1):259-64. No abstract available.


Genetic and physiological diversity of Tetragenococcus halophilus strains isolated from sugar- and salt-rich environments.

Justé A, Lievens B, Frans I, Marsh TL, Klingeberg M, Michiels CW, Willems KA.

Microbiology. 2008 Sep;154(Pt 9):2600-10. doi: 10.1099/mic.0.2008/018168-0.


Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Cardenas E, Wu WM, Leigh MB, Carley J, Carroll S, Gentry T, Luo J, Watson D, Gu B, Ginder-Vogel M, Kitanidis PK, Jardine PM, Zhou J, Criddle CS, Marsh TL, Tiedje JM.

Appl Environ Microbiol. 2008 Jun;74(12):3718-29. doi: 10.1128/AEM.02308-07. Epub 2008 May 2.

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