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Recent advances in understanding the natural history of the otitis media microbiome and its response to environmental pressures.

Marsh RL, Aho C, Beissbarth J, Bialasiewicz S, Binks M, Cervin A, Kirkham LS, Lemon KP, Slack MPE, Smith-Vaughan HC.

Int J Pediatr Otorhinolaryngol. 2019 Dec 18:109836. doi: 10.1016/j.ijporl.2019.109836. [Epub ahead of print]


Association between Micronutrient Deficiency Dermatoses and Clinical Outcomes in Hospitalized Patients.

Marsh RL, Trinidad J, Shearer S, Kaffenberger BH.

J Am Acad Dermatol. 2019 Oct 30. pii: S0190-9622(19)32980-9. doi: 10.1016/j.jaad.2019.10.057. [Epub ahead of print] No abstract available.


The Multi-Scale, Three-Dimensional Nature of Skeletal Muscle Contraction.

Roberts TJ, Eng CM, Sleboda DA, Holt NC, Brainerd EL, Stover KK, Marsh RL, Azizi E.

Physiology (Bethesda). 2019 Nov 1;34(6):402-408. doi: 10.1152/physiol.00023.2019.


Warm bodies, cool wings: regional heterothermy in flying bats.

Rummel AD, Swartz SM, Marsh RL.

Biol Lett. 2019 Sep 27;15(9):20190530. doi: 10.1098/rsbl.2019.0530. Epub 2019 Sep 11.


Method for culturing Candidatus Ornithobacterium hominis.

Lawrence KA, Harris TM, Salter SJ, Hall RW, Smith-Vaughan HC, Chang AB, Marsh RL.

J Microbiol Methods. 2019 Apr;159:157-160. doi: 10.1016/j.mimet.2019.03.006. Epub 2019 Mar 11.


Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles.

Nelson MT, Pope CE, Marsh RL, Wolter DJ, Weiss EJ, Hager KR, Vo AT, Brittnacher MJ, Radey MC, Hayden HS, Eng A, Miller SI, Borenstein E, Hoffman LR.

Cell Rep. 2019 Feb 19;26(8):2227-2240.e5. doi: 10.1016/j.celrep.2019.01.091.


Multiple Respiratory Microbiota Profiles Are Associated With Lower Airway Inflammation in Children With Protracted Bacterial Bronchitis.

Marsh RL, Smith-Vaughan HC, Chen ACH, Marchant JM, Yerkovich ST, Gibson PG, Pizzutto SJ, Hodge S, Upham JW, Chang AB.

Chest. 2019 Apr;155(4):778-786. doi: 10.1016/j.chest.2019.01.002. Epub 2019 Jan 17.


The unsolved problem of otitis media in indigenous populations: a systematic review of upper respiratory and middle ear microbiology in indigenous children with otitis media.

Coleman A, Wood A, Bialasiewicz S, Ware RS, Marsh RL, Cervin A.

Microbiome. 2018 Nov 5;6(1):199. doi: 10.1186/s40168-018-0577-2.


How low can we go? The implications of low bacterial load in respiratory microbiota studies.

Marsh RL, Nelson MT, Pope CE, Leach AJ, Hoffman LR, Chang AB, Smith-Vaughan HC.

Pneumonia (Nathan). 2018 Jul 5;10:7. doi: 10.1186/s41479-018-0051-8. eCollection 2018. Review.


Bacteria and viruses in the nasopharynx immediately prior to onset of acute lower respiratory infections in Indigenous Australian children.

Smith-Vaughan HC, Binks MJ, Beissbarth J, Chang AB, McCallum GB, Mackay IM, Morris PS, Marsh RL, Torzillo PJ, Wurzel DF, Grimwood K, Nosworthy E, Gaydon JE, Leach AJ, MacHunter B, Chatfield MD, Sloots TP, Cheng AC.

Eur J Clin Microbiol Infect Dis. 2018 Sep;37(9):1785-1794. doi: 10.1007/s10096-018-3314-7. Epub 2018 Jun 29.


Low thermal dependence of the contractile properties of a wing muscle in the bat Carollia perspicillata.

Rummel AD, Swartz SM, Marsh RL.

J Exp Biol. 2018 Jul 18;221(Pt 14). pii: jeb180166. doi: 10.1242/jeb.180166.


Recommendations for application of Haemophilus influenzae PCR diagnostics to respiratory specimens for children living in northern Australia: a retrospective re-analysis.

Beissbarth J, Binks MJ, Marsh RL, Chang AB, Leach AJ, Smith-Vaughan HC.

BMC Res Notes. 2018 May 21;11(1):323. doi: 10.1186/s13104-018-3429-z.


Geographic consistency in dominant, non-typeable Haemophilus influenzae genotypes colonising four distinct Australian paediatric groups: a cohort study.

Smith-Vaughan HC, Beissbarth J, Bowman J, Hare KM, Price EP, Pickering J, Lehmann D, Chang AB, Morris PS, Marsh RL, Leach AJ.

Pneumonia (Nathan). 2016 Aug 18;8:13. doi: 10.1186/s41479-016-0013-y. eCollection 2016.


Speed of sound in muscle for use in sonomicrometry.

Marsh RL.

J Biomech. 2016 Dec 8;49(16):4138-4141. doi: 10.1016/j.jbiomech.2016.10.024. Epub 2016 Oct 21. Review.


Unexpected role of interferon-γ in regulating neuronal connectivity and social behaviour.

Filiano AJ, Xu Y, Tustison NJ, Marsh RL, Baker W, Smirnov I, Overall CC, Gadani SP, Turner SD, Weng Z, Peerzade SN, Chen H, Lee KS, Scott MM, Beenhakker MP, Litvak V, Kipnis J.

Nature. 2016 Jul 21;535(7612):425-9. Epub 2016 Jul 13.


The microbiota in bronchoalveolar lavage from young children with chronic lung disease includes taxa present in both the oropharynx and nasopharynx.

Marsh RL, Kaestli M, Chang AB, Binks MJ, Pope CE, Hoffman LR, Smith-Vaughan HC.

Microbiome. 2016 Jul 7;4(1):37. doi: 10.1186/s40168-016-0182-1.


Respiratory bacterial culture from two sequential bronchoalveolar lavages of the same lobe in children with chronic cough.

Hare KM, Marsh RL, Smith-Vaughan HC, Bauert P, Chang AB.

J Med Microbiol. 2015 Nov;64(11):1353-60. doi: 10.1099/jmm.0.000173. Epub 2015 Sep 22.


Haemophilus influenzae: using comparative genomics to accurately identify a highly recombinogenic human pathogen.

Price EP, Sarovich DS, Nosworthy E, Beissbarth J, Marsh RL, Pickering J, Kirkham LA, Keil AD, Chang AB, Smith-Vaughan HC.

BMC Genomics. 2015 Aug 27;16:641. doi: 10.1186/s12864-015-1857-x.


Republished: Respiratory microbiota: addressing clinical questions, informing clinical practice.

Rogers GB, Shaw D, Marsh RL, Carroll MP, Serisier DJ, Bruce KD.

Postgrad Med J. 2015 Aug;91(1078):463-70. doi: 10.1136/postgradmedj-2014-205826rep. Review.


The microbiome of otitis media with effusion in Indigenous Australian children.

Jervis-Bardy J, Rogers GB, Morris PS, Smith-Vaughan HC, Nosworthy E, Leong LE, Smith RJ, Weyrich LS, De Haan J, Carney AS, Leach AJ, O'Leary S, Marsh RL.

Int J Pediatr Otorhinolaryngol. 2015 Sep;79(9):1548-55. doi: 10.1016/j.ijporl.2015.07.013. Epub 2015 Jul 17.


Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data.

Jervis-Bardy J, Leong LE, Marri S, Smith RJ, Choo JM, Smith-Vaughan HC, Nosworthy E, Morris PS, O'Leary S, Rogers GB, Marsh RL.

Microbiome. 2015 May 5;3:19. doi: 10.1186/s40168-015-0083-8. eCollection 2015.


Toward making inroads in reducing the disparity of lung health in Australian indigenous and new zealand māori children.

Chang AB, Marsh RL, Upham JW, Hoffman LR, Smith-Vaughan H, Holt D, Toombs M, Byrnes C, Yerkovich ST, Torzillo PJ, O'Grady KA, Grimwood K.

Front Pediatr. 2015 Feb 13;3:9. doi: 10.3389/fped.2015.00009. eCollection 2015. Review. No abstract available.


Emerging drugs for bronchiectasis: an update.

Chang AB, Marsh RL, Smith-Vaughan HC, Hoffman LR.

Expert Opin Emerg Drugs. 2015 Jun;20(2):277-97. doi: 10.1517/14728214.2015.1021683. Epub 2015 Mar 3. Review.


Judging the reality of others' memories.

Clark-Foos A, Brewer G, Marsh RL.

Memory. 2015;23(3):427-36. doi: 10.1080/09658211.2014.893364. Epub 2014 Mar 10.


The influence of mood on the process and content of encoding future intentions.

Knight JB, Brewer GA, Ball BH, DeWitt MR, Marsh RL.

Q J Exp Psychol (Hove). 2015;68(6):1082-100. doi: 10.1080/17470218.2014.975729. Epub 2015 Jan 9.


Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota.

Brown PS, Pope CE, Marsh RL, Qin X, McNamara S, Gibson R, Burns JL, Deutsch G, Hoffman LR.

Ann Am Thorac Soc. 2014 Sep;11(7):1049-55. doi: 10.1513/AnnalsATS.201311-383OC. Review.


Respiratory microbiota: addressing clinical questions, informing clinical practice.

Rogers GB, Shaw D, Marsh RL, Carroll MP, Serisier DJ, Bruce KD.

Thorax. 2015 Jan;70(1):74-81. doi: 10.1136/thoraxjnl-2014-205826. Epub 2014 Jul 17. Review.


Lung disease in indigenous children.

Chang AB, Brown N, Toombs M, Marsh RL, Redding GJ.

Paediatr Respir Rev. 2014 Dec;15(4):325-32. doi: 10.1016/j.prrv.2014.04.016. Epub 2014 May 16. Review.


Detection of biofilm in bronchoalveolar lavage from children with non-cystic fibrosis bronchiectasis.

Marsh RL, Thornton RB, Smith-Vaughan HC, Richmond P, Pizzutto SJ, Chang AB.

Pediatr Pulmonol. 2015 Mar;50(3):284-292. doi: 10.1002/ppul.23031. Epub 2014 Mar 18.


Three clinically distinct chronic pediatric airway infections share a common core microbiota.

van der Gast CJ, Cuthbertson L, Rogers GB, Pope C, Marsh RL, Redding GJ, Bruce KD, Chang AB, Hoffman LR.

Ann Am Thorac Soc. 2014 Sep;11(7):1039-48. doi: 10.1513/AnnalsATS.201312-456OC.


Investigating the subjective reports of rejection processes in the word frequency mirror effect.

Meeks JT, Knight JB, Brewer GA, Cook GI, Marsh RL.

Conscious Cogn. 2014 Feb;24:57-69. doi: 10.1016/j.concog.2013.12.007. Epub 2014 Jan 11.


Absence of an important vaccine and diagnostic target in carriage- and disease-related nontypeable Haemophilus influenzae.

Smith-Vaughan HC, Chang AB, Sarovich DS, Marsh RL, Grimwood K, Leach AJ, Morris PS, Price EP.

Clin Vaccine Immunol. 2014 Feb;21(2):250-2. doi: 10.1128/CVI.00632-13. Epub 2013 Nov 27.


Chasing maximal performance: a cautionary tale from the celebrated jumping frogs of Calaveras County.

Astley HC, Abbott EM, Azizi E, Marsh RL, Roberts TJ.

J Exp Biol. 2013 Nov 1;216(Pt 21):3947-53. doi: 10.1242/jeb.090357.


Dominance of Haemophilus influenzae in ear discharge from Indigenous Australian children with acute otitis media with tympanic membrane perforation.

Smith-Vaughan HC, Binks MJ, Marsh RL, Kaestli M, Ward L, Hare KM, Pizzutto SJ, Thornton RB, Morris PS, Leach AJ.

BMC Ear Nose Throat Disord. 2013 Oct 8;13(1):12. doi: 10.1186/1472-6815-13-12.


Quantitative PCR confirms culture as the gold standard for detection of lower airway infection by nontypeable Haemophilus influenzae in Australian Indigenous children with bronchiectasis.

Hare KM, Marsh RL, Binks MJ, Grimwood K, Pizzutto SJ, Leach AJ, Chang AB, Smith-Vaughan HC.

J Microbiol Methods. 2013 Mar;92(3):270-2. doi: 10.1016/j.mimet.2012.12.013. Epub 2012 Dec 22.


Quantitative PCR of ear discharge from Indigenous Australian children with acute otitis media with perforation supports a role for Alloiococcus otitidis as a secondary pathogen.

Marsh RL, Binks MJ, Beissbarth J, Christensen P, Morris PS, Leach AJ, Smith-Vaughan HC.

BMC Ear Nose Throat Disord. 2012 Oct 3;12:11. doi: 10.1186/1472-6815-12-11.


MiR-155 induction by microbes/microbial ligands requires NF-κB-dependent de novo protein synthesis.

Cremer TJ, Fatehchand K, Shah P, Gillette D, Patel H, Marsh RL, Besecker BY, Rajaram MV, Cormet-Boyaka E, Kanneganti TD, Schlesinger LS, Butchar JP, Tridandapani S.

Front Cell Infect Microbiol. 2012 Jun 1;2:73. doi: 10.3389/fcimb.2012.00073. eCollection 2012.


Emerging drugs for bronchiectasis.

Chang AB, Marsh RL, Smith-Vaughan HC, Hoffman LR.

Expert Opin Emerg Drugs. 2012 Sep;17(3):361-78. doi: 10.1517/14728214.2012.702755. Epub 2012 Jul 19. Review.


Preparatory distributed cortical synchronization determines execution of some, but not all, future intentions.

Knight JB, Marsh RL, Brewer GA, Clementz BA.

Psychophysiology. 2012 Sep;49(9):1155-67. doi: 10.1111/j.1469-8986.2012.01400.x. Epub 2012 Jun 29.


Molecular surveillance of true nontypeable Haemophilus influenzae: an evaluation of PCR screening assays.

Binks MJ, Temple B, Kirkham LA, Wiertsema SP, Dunne EM, Richmond PC, Marsh RL, Leach AJ, Smith-Vaughan HC.

PLoS One. 2012;7(3):e34083. doi: 10.1371/journal.pone.0034083. Epub 2012 Mar 28.


Function of a large biarticular hip and knee extensor during walking and running in guinea fowl (Numida meleagris).

Carr JA, Ellerby DJ, Marsh RL.

J Exp Biol. 2011 Oct 15;214(Pt 20):3405-13. doi: 10.1242/jeb.060335.


Mechanisms producing coordinated function across the breadth of a large biarticular thigh muscle.

Carr JA, Ellerby DJ, Rubenson J, Marsh RL.

J Exp Biol. 2011 Oct 15;214(Pt 20):3396-404. doi: 10.1242/jeb.060319.


Differential segmental strain during active lengthening in a large biarticular thigh muscle during running.

Carr JA, Ellerby DJ, Marsh RL.

J Exp Biol. 2011 Oct 15;214(Pt 20):3386-95. doi: 10.1242/jeb.050252.


Divided attention interferes with fulfilling activity-based intentions.

Brewer GA, Ball BH, Knight JB, Dewitt MR, Marsh RL.

Acta Psychol (Amst). 2011 Sep;138(1):100-5. doi: 10.1016/j.actpsy.2011.05.011. Epub 2011 Jun 25.


LyGDI, a novel SHIP-interacting protein, is a negative regulator of FcγR-mediated phagocytosis.

Mehta P, Wavreille AS, Justiniano SE, Marsh RL, Yu J, Burry RW, Jarjoura D, Eubank T, Caligiuri MA, Butchar JP, Tridandapani S.

PLoS One. 2011;6(6):e21175. doi: 10.1371/journal.pone.0021175. Epub 2011 Jun 14.


On the role of imagery in event-based prospective memory.

Brewer GA, Knight J, Meeks JT, Marsh RL.

Conscious Cogn. 2011 Sep;20(3):901-7. doi: 10.1016/j.concog.2011.02.015. Epub 2011 May 23.


An observation on the spontaneous noticing of prospective memory event-based cues.

Knight JB, Meeks JT, Marsh RL, Cook GI, Brewer GA, Hicks JL.

J Exp Psychol Learn Mem Cogn. 2011 Mar;37(2):298-307. doi: 10.1037/a0021969.


The reactivation of associated information affects source monitoring.

Ball BH, Marsh RL, Meeks JT, Hicks JL.

Mem Cognit. 2011 Jul;39(5):818-26. doi: 10.3758/s13421-011-0073-4.


Gait-specific energetics contributes to economical walking and running in emus and ostriches.

Watson RR, Rubenson J, Coder L, Hoyt DF, Propert MW, Marsh RL.

Proc Biol Sci. 2011 Jul 7;278(1714):2040-6. doi: 10.1098/rspb.2010.2022. Epub 2010 Dec 1.


Are you listening? The inaugural Australian Otitis Media (OMOZ) workshop--towards a better understanding of otitis media.

Kirkham LA, Wiertsema SP, Smith-Vaughan HC, Thornton RB, Marsh RL, Lehmann D, Leach AJ, Morris PS, Richmond PC.

Med J Aust. 2010 Nov 15;193(10):569-71. No abstract available.


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