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Items: 29

1.

Amphioxus functional genomics and the origins of vertebrate gene regulation.

Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, Jimenez-Gancedo S, Aldea D, Marquez Y, Buono L, Kozmikova I, Permanyer J, Louis A, Albuixech-Crespo B, Le Petillon Y, Leon A, Subirana L, Balwierz PJ, Duckett PE, Farahani E, Aury JM, Mangenot S, Wincker P, Albalat R, Benito-Gutiérrez È, Cañestro C, Castro F, D'Aniello S, Ferrier DEK, Huang S, Laudet V, Marais GAB, Pontarotti P, Schubert M, Seitz H, Somorjai I, Takahashi T, Mirabeau O, Xu A, Yu JK, Carninci P, Martinez-Morales JR, Crollius HR, Kozmik Z, Weirauch MT, Garcia-Fernàndez J, Lister R, Lenhard B, Holland PWH, Escriva H, Gómez-Skarmeta JL, Irimia M.

Nature. 2018 Dec;564(7734):64-70. doi: 10.1038/s41586-018-0734-6. Epub 2018 Nov 21.

PMID:
30464347
2.

Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes.

Burguera D, Marquez Y, Racioppi C, Permanyer J, Torres-Méndez A, Esposito R, Albuixech-Crespo B, Fanlo L, D'Agostino Y, Gohr A, Navas-Perez E, Riesgo A, Cuomo C, Benvenuto G, Christiaen LA, Martí E, D'Aniello S, Spagnuolo A, Ristoratore F, Arnone MI, Garcia-Fernàndez J, Irimia M.

Nat Commun. 2017 Nov 27;8(1):1799. doi: 10.1038/s41467-017-01961-y.

3.

Frequency and clinical and molecular aspects of familial hypercholesterolemia in an endocrinology unit in Ciudad Bolívar, Venezuela.

Lima-Martínez MM, Paoli M, Vázquez-Cárdenas A, Magaña-Torres MT, Guevara O, Muñoz MC, Parrilla-Alvarez A, Márquez Y, Medeiros A, Bourbon M.

Endocrinol Diabetes Nutr. 2017 Oct;64(8):432-439. doi: 10.1016/j.endinu.2017.05.007. Epub 2017 Jul 4. English, Spanish.

PMID:
28895539
4.

An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms.

Tapial J, Ha KCH, Sterne-Weiler T, Gohr A, Braunschweig U, Hermoso-Pulido A, Quesnel-Vallières M, Permanyer J, Sodaei R, Marquez Y, Cozzuto L, Wang X, Gómez-Velázquez M, Rayon T, Manzanares M, Ponomarenko J, Blencowe BJ, Irimia M.

Genome Res. 2017 Oct;27(10):1759-1768. doi: 10.1101/gr.220962.117. Epub 2017 Aug 30.

5.

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.

Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, Frei Dit Frey N, Hirt H, James AB, Nimmo HG, Barta A, Kalyna M, Brown JWS.

Nucleic Acids Res. 2017 May 19;45(9):5061-5073. doi: 10.1093/nar/gkx267.

6.

Incorporation of biguanide compounds into poly(GL)-b-poly(GL-co-TMC-co-CL)-b-poly(GL) monofilament surgical sutures.

Márquez Y, Cabral T, Lorenzetti A, Franco L, Turon P, Del Valle LJ, Puiggalí J.

Mater Sci Eng C Mater Biol Appl. 2017 Feb 1;71:629-640. doi: 10.1016/j.msec.2016.10.049. Epub 2016 Oct 26.

PMID:
27987754
7.

Dysregulation of PINCH signaling in mesial temporal epilepsy.

Liu C, Russin J, Heck C, Kawata K, Adiga R, Yen W, Lambert J, Stear B, Law M, Marquez Y, Crino P, Millett D, Langford D.

J Clin Neurosci. 2017 Feb;36:43-52. doi: 10.1016/j.jocn.2016.10.012. Epub 2016 Nov 9.

PMID:
27838154
8.

The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast.

Aronica L, Kasparek T, Ruchman D, Marquez Y, Cipak L, Cipakova I, Anrather D, Mikolaskova B, Radtke M, Sarkar S, Pai CC, Blaikley E, Walker C, Shen KF, Schroeder R, Barta A, Forsburg SL, Humphrey TC.

Nucleic Acids Res. 2016 Feb 29;44(4):1703-17. doi: 10.1093/nar/gkv1473. Epub 2015 Dec 17.

9.

Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.

Brown JW, Simpson CG, Marquez Y, Gadd GM, Barta A, Kalyna M.

Plant Cell. 2015 Aug;27(8):2083-7. doi: 10.1105/tpc.15.00572. Epub 2015 Aug 18.

10.

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW.

New Phytol. 2015 Oct;208(1):96-101. doi: 10.1111/nph.13545. Epub 2015 Jun 25.

11.

A Single-Center Experience with the NeuroPace RNS System: A Review of Techniques and Potential Problems.

Lee B, Zubair MN, Marquez YD, Lee DM, Kalayjian LA, Heck CN, Liu CY.

World Neurosurg. 2015 Sep;84(3):719-26. doi: 10.1016/j.wneu.2015.04.050. Epub 2015 May 1.

PMID:
25940211
12.

Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity.

Marquez Y, Höpfler M, Ayatollahi Z, Barta A, Kalyna M.

Genome Res. 2015 Jul;25(7):995-1007. doi: 10.1101/gr.186585.114. Epub 2015 May 1.

13.

A Perfusion-based Human Cadaveric Model for Management of Carotid Artery Injury during Endoscopic Endonasal Skull Base Surgery.

Pham M, Kale A, Marquez Y, Winer J, Lee B, Harris B, Minnetti M, Carey J, Giannotta S, Zada G.

J Neurol Surg B Skull Base. 2014 Oct;75(5):309-13. doi: 10.1055/s-0034-1372470. Epub 2014 May 2.

14.

Resection of a cystic brainstem hemangioblastoma via a retrosigmoid approach.

Lee B, Marquez YD, Giannotta SL.

Neurosurg Focus. 2014 Jan;36(1 Suppl):1. doi: 10.3171/2014.V1.FOCUS13434.

PMID:
24380524
15.

Complexity of the alternative splicing landscape in plants.

Reddy AS, Marquez Y, Kalyna M, Barta A.

Plant Cell. 2013 Oct;25(10):3657-83. doi: 10.1105/tpc.113.117523. Epub 2013 Oct 31. Review.

16.

Diagnosis and surgical management of traumatic cerebrospinal fluid oculorrhea: case report and systematic review of the literature.

Pease M, Marquez Y, Tuchman A, Markarian A, Zada G.

J Neurol Surg Rep. 2013 Jun;74(1):57-66. doi: 10.1055/s-0033-1347902. Epub 2013 May 23.

17.

New proteoliposome vaccine formulation from N. meningitidis serogroup B, without aluminum hydroxide, retains its antimeningococcal protectogenic potential as well as Th-1 adjuvant capacity.

Tamargo B, Márquez Y, Ramírez W, Cedré B, Fresno M, Sierra G.

BMC Immunol. 2013;14 Suppl 1:S12. doi: 10.1186/1471-2172-14-S1-S12. Epub 2013 Feb 25.

18.

Identification of RNA targets for the nuclear multidomain cyclophilin atCyp59 and their effect on PPIase activity.

Bannikova O, Zywicki M, Marquez Y, Skrahina T, Kalyna M, Barta A.

Nucleic Acids Res. 2013 Feb 1;41(3):1783-96. doi: 10.1093/nar/gks1252. Epub 2012 Dec 16.

19.

Alternative splicing in plants--coming of age.

Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW.

Trends Plant Sci. 2012 Oct;17(10):616-23. doi: 10.1016/j.tplants.2012.06.001. Epub 2012 Jun 27. Review.

20.

Surgery and radiosurgery for acromegaly: a review of indications, operative techniques, outcomes, and complications.

Marquez Y, Tuchman A, Zada G.

Int J Endocrinol. 2012;2012:386401. doi: 10.1155/2012/386401. Epub 2012 Mar 1.

21.

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M.

Genome Res. 2012 Jun;22(6):1184-95. doi: 10.1101/gr.134106.111. Epub 2012 Mar 5.

22.

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW.

Nucleic Acids Res. 2012 Mar;40(6):2454-69. doi: 10.1093/nar/gkr932. Epub 2011 Nov 29.

23.

Nodulin 41, a novel late nodulin of common bean with peptidase activity.

Olivares JE, Díaz-Camino C, Estrada-Navarrete G, Alvarado-Affantranger X, Rodríguez-Kessler M, Zamudio FZ, Olamendi-Portugal T, Márquez Y, Servín LE, Sánchez F.

BMC Plant Biol. 2011 Oct 10;11:134. doi: 10.1186/1471-2229-11-134.

24.

Trauma-focused cognitive behavioral therapy of a child with posttraumatic stress disorder.

Grasso DJ, Joselow B, Marquez Y, Webb C.

Psychotherapy (Chic). 2011 Jun;48(2):188-97. doi: 10.1037/a0023133.

PMID:
21639663
25.

Efficiency of two timed artificial insemination protocols in Murrah buffaloes managed under a semi-intensive system in the tropics.

Oropeza AJ, Rojas AF, Velazquez MA, Muro JD, Márquez YC, Vilanova LT.

Trop Anim Health Prod. 2010 Aug;42(6):1149-54. doi: 10.1007/s11250-010-9539-9. Epub 2010 Apr 2.

PMID:
20358403
26.

Seasonal effect on zebu embryo quality as determined by their degree of apoptosis and resistance to cryopreservation.

Marquez YC, Galina CS, Moreno N, Ruiz H, Ruiz A, Merchant H.

Reprod Domest Anim. 2005 Dec;40(6):553-8.

PMID:
16324083
27.

Cellular signaling in neural stem cells: implications for restorative neurosurgery.

Marquez YD, Wang MY, Liu CY.

Neurosurg Focus. 2005 Sep 15;19(3):E2. Review.

PMID:
16190601
28.

Comparison of stereoscopy, light microscopy and ultrastructural methods for evaluation of bovine embryos.

Aguilar MM, Galina CS, Merchant H, Montiel F, Canseco R, Márquez YC.

Reprod Domest Anim. 2002 Dec;37(6):341-6.

PMID:
12464072
29.

[Biological and interlaboratory variations in human semen].

Martínez Meza MT, Alonso Uriarte R, Goicoechea Zuñiga BE, González Diddi M, Cruz Rodríguez A, Márquez Y, Cortés-Gallegos V.

Ginecol Obstet Mex. 1985 Sep;53:257-62. Spanish. No abstract available.

PMID:
4076779

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