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Items: 17

1.

redbiom: a Rapid Sample Discovery and Feature Characterization System.

McDonald D, Kaehler B, Gonzalez A, DeReus J, Ackermann G, Marotz C, Huttley G, Knight R.

mSystems. 2019 Jun 25;4(4). pii: e00215-19. doi: 10.1128/mSystems.00215-19.

2.

Establishing microbial composition measurement standards with reference frames.

Morton JT, Marotz C, Washburne A, Silverman J, Zaramela LS, Edlund A, Zengler K, Knight R.

Nat Commun. 2019 Jun 20;10(1):2719. doi: 10.1038/s41467-019-10656-5.

3.

Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.

Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R.

Biotechniques. 2019 Jul;67(1):29-32. doi: 10.2144/btn-2018-0192. Epub 2019 May 24.

4.

A Novel Sparse Compositional Technique Reveals Microbial Perturbations.

Martino C, Morton JT, Marotz CA, Thompson LR, Tripathi A, Knight R, Zengler K.

mSystems. 2019 Feb 12;4(1). pii: e00016-19. doi: 10.1128/mSystems.00016-19. eCollection 2019 Jan-Feb.

5.

Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations.

Eisenhofer R, Minich JJ, Marotz C, Cooper A, Knight R, Weyrich LS.

Trends Microbiol. 2019 Feb;27(2):105-117. doi: 10.1016/j.tim.2018.11.003. Epub 2018 Nov 26. Review.

PMID:
30497919
6.

Are microbiome studies ready for hypothesis-driven research?

Tripathi A, Marotz C, Gonzalez A, Vázquez-Baeza Y, Song SJ, Bouslimani A, McDonald D, Zhu Q, Sanders JG, Smarr L, Dorrestein PC, Knight R.

Curr Opin Microbiol. 2018 Aug;44:61-69. doi: 10.1016/j.mib.2018.07.002. Epub 2018 Jul 27. Review.

PMID:
30059804
7.

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.

Zarrinpar A, Chaix A, Xu ZZ, Chang MW, Marotz CA, Saghatelian A, Knight R, Panda S.

Nat Commun. 2018 Jul 20;9(1):2872. doi: 10.1038/s41467-018-05336-9.

8.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

9.

Improving saliva shotgun metagenomics by chemical host DNA depletion.

Marotz CA, Sanders JG, Zuniga C, Zaramela LS, Knight R, Zengler K.

Microbiome. 2018 Feb 27;6(1):42. doi: 10.1186/s40168-018-0426-3.

10.

Impacts of the Human Gut Microbiome on Therapeutics.

Vázquez-Baeza Y, Callewaert C, Debelius J, Hyde E, Marotz C, Morton JT, Swafford A, Vrbanac A, Dorrestein PC, Knight R.

Annu Rev Pharmacol Toxicol. 2018 Jan 6;58:253-270. doi: 10.1146/annurev-pharmtox-042017-031849. Epub 2017 Oct 2. Review.

PMID:
28968189
11.

The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.

Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA.

Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512.

12.

DNA extraction for streamlined metagenomics of diverse environmental samples.

Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R.

Biotechniques. 2017 Jun 1;62(6):290-293. doi: 10.2144/000114559.

13.

The Microbiome and Human Biology.

Knight R, Callewaert C, Marotz C, Hyde ER, Debelius JW, McDonald D, Sogin ML.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:65-86. doi: 10.1146/annurev-genom-083115-022438. Epub 2017 Mar 20. Review.

PMID:
28375652
14.

Treating Obesity and Metabolic Syndrome with Fecal Microbiota Transplantation.

Marotz CA, Zarrinpar A.

Yale J Biol Med. 2016 Sep 30;89(3):383-388. eCollection 2016 Sep. Review.

15.

Culturing: Looking it up in our gut.

Marotz C, Knight R.

Nat Microbiol. 2016 Sep 27;1(10):16169. doi: 10.1038/nmicrobiol.2016.169. No abstract available.

PMID:
27670121
16.

Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer.

Beltran H, Prandi D, Mosquera JM, Benelli M, Puca L, Cyrta J, Marotz C, Giannopoulou E, Chakravarthi BV, Varambally S, Tomlins SA, Nanus DM, Tagawa ST, Van Allen EM, Elemento O, Sboner A, Garraway LA, Rubin MA, Demichelis F.

Nat Med. 2016 Mar;22(3):298-305. doi: 10.1038/nm.4045. Epub 2016 Feb 8.

17.

SPOP mutation leads to genomic instability in prostate cancer.

Boysen G, Barbieri CE, Prandi D, Blattner M, Chae SS, Dahija A, Nataraj S, Huang D, Marotz C, Xu L, Huang J, Lecca P, Chhangawala S, Liu D, Zhou P, Sboner A, de Bono JS, Demichelis F, Houvras Y, Rubin MA.

Elife. 2015 Sep 16;4. pii: e09207. doi: 10.7554/eLife.09207.

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