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Items: 1 to 50 of 156

1.

Estimating the Readily-Releasable Vesicle Pool Size at Synaptic Connections in the Neocortex.

Barros-Zulaica N, Rahmon J, Chindemi G, Perin R, Markram H, Muller E, Ramaswamy S.

Front Synaptic Neurosci. 2019 Oct 15;11:29. doi: 10.3389/fnsyn.2019.00029. eCollection 2019.

2.

A Kinetic Map of the Homomeric Voltage-Gated Potassium Channel (Kv) Family.

Ranjan R, Logette E, Marani M, Herzog M, Tâche V, Scantamburlo E, Buchillier V, Markram H.

Front Cell Neurosci. 2019 Aug 20;13:358. doi: 10.3389/fncel.2019.00358. eCollection 2019.

3.

A null model of the mouse whole-neocortex micro-connectome.

Reimann MW, Gevaert M, Shi Y, Lu H, Markram H, Muller E.

Nat Commun. 2019 Aug 29;10(1):3903. doi: 10.1038/s41467-019-11630-x.

4.

Caries Detection with Near-Infrared Transillumination Using Deep Learning.

Casalegno F, Newton T, Daher R, Abdelaziz M, Lodi-Rizzini A, Schürmann F, Krejci I, Markram H.

J Dent Res. 2019 Oct;98(11):1227-1233. doi: 10.1177/0022034519871884. Epub 2019 Aug 26.

5.

A Derived Positional Mapping of Inhibitory Subtypes in the Somatosensory Cortex.

Keller D, Meystre J, Veettil RV, Burri O, Guiet R, Schürmann F, Markram H.

Front Neuroanat. 2019 Aug 6;13:78. doi: 10.3389/fnana.2019.00078. eCollection 2019.

6.

Cortical reliability amid noise and chaos.

Nolte M, Reimann MW, King JG, Markram H, Muller EB.

Nat Commun. 2019 Aug 22;10(1):3792. doi: 10.1038/s41467-019-11633-8.

7.

A Brief History of Simulation Neuroscience.

Fan X, Markram H.

Front Neuroinform. 2019 May 7;13:32. doi: 10.3389/fninf.2019.00032. eCollection 2019. Review.

8.

Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons.

Iavarone E, Yi J, Shi Y, Zandt BJ, O'Reilly C, Van Geit W, Rössert C, Markram H, Hill SL.

PLoS Comput Biol. 2019 May 16;15(5):e1006753. doi: 10.1371/journal.pcbi.1006753. eCollection 2019 May.

9.

Cellular, Synaptic and Network Effects of Acetylcholine in the Neocortex.

Colangelo C, Shichkova P, Keller D, Markram H, Ramaswamy S.

Front Neural Circuits. 2019 Apr 12;13:24. doi: 10.3389/fncir.2019.00024. eCollection 2019. Review.

10.

Individual differences in sensory sensitivity: Further lessons from an Autism model.

Favre MR, Markram H, Markram K.

Cogn Neurosci. 2019 Jul;10(3):171-173. doi: 10.1080/17588928.2019.1592143. Epub 2019 Mar 27.

PMID:
30849278
11.

Corrigendum: A Cell Atlas for the Mouse Brain.

Erö C, Gewaltig MO, Keller D, Markram H.

Front Neuroinform. 2019 Feb 19;13:7. doi: 10.3389/fninf.2019.00007. eCollection 2019.

12.

Objective Morphological Classification of Neocortical Pyramidal Cells.

Kanari L, Ramaswamy S, Shi Y, Morand S, Meystre J, Perin R, Abdellah M, Wang Y, Hess K, Markram H.

Cereb Cortex. 2019 Apr 1;29(4):1719-1735. doi: 10.1093/cercor/bhy339.

13.

A Cell Atlas for the Mouse Brain.

Erö C, Gewaltig MO, Keller D, Markram H.

Front Neuroinform. 2018 Nov 28;12:84. doi: 10.3389/fninf.2018.00084. eCollection 2018. Erratum in: Front Neuroinform. 2019 Feb 19;13:7.

14.

Cell Densities in the Mouse Brain: A Systematic Review.

Keller D, Erö C, Markram H.

Front Neuroanat. 2018 Oct 23;12:83. doi: 10.3389/fnana.2018.00083. eCollection 2018.

15.

Data-Driven Modeling of Cholinergic Modulation of Neural Microcircuits: Bridging Neurons, Synapses and Network Activity.

Ramaswamy S, Colangelo C, Markram H.

Front Neural Circuits. 2018 Oct 9;12:77. doi: 10.3389/fncir.2018.00077. eCollection 2018.

16.

A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble.

Coggan JS, Calì C, Keller D, Agus M, Boges D, Abdellah M, Kare K, Lehväslaiho H, Eilemann S, Jolivet RB, Hadwiger M, Markram H, Schürmann F, Magistretti PJ.

Front Neurosci. 2018 Sep 25;12:664. doi: 10.3389/fnins.2018.00664. eCollection 2018.

17.

The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow.

Migliore R, Lupascu CA, Bologna LL, Romani A, Courcol JD, Antonel S, Van Geit WAH, Thomson AM, Mercer A, Lange S, Falck J, Rössert CA, Shi Y, Hagens O, Pezzoli M, Freund TF, Kali S, Muller EB, Schürmann F, Markram H, Migliore M.

PLoS Comput Biol. 2018 Sep 17;14(9):e1006423. doi: 10.1371/journal.pcbi.1006423. eCollection 2018 Sep.

18.

Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate.

Coggan JS, Keller D, Calì C, Lehväslaiho H, Markram H, Schürmann F, Magistretti PJ.

PLoS Comput Biol. 2018 Aug 30;14(8):e1006392. doi: 10.1371/journal.pcbi.1006392. eCollection 2018 Aug.

19.

NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks.

Abdellah M, Hernando J, Eilemann S, Lapere S, Antille N, Markram H, Schürmann F.

Bioinformatics. 2018 Jul 1;34(13):i574-i582. doi: 10.1093/bioinformatics/bty231.

20.

Timed Synaptic Inhibition Shapes NMDA Spikes, Influencing Local Dendritic Processing and Global I/O Properties of Cortical Neurons.

Doron M, Chindemi G, Muller E, Markram H, Segev I.

Cell Rep. 2017 Nov 7;21(6):1550-1561. doi: 10.1016/j.celrep.2017.10.035.

21.

A Topological Representation of Branching Neuronal Morphologies.

Kanari L, Dłotko P, Scolamiero M, Levi R, Shillcock J, Hess K, Markram H.

Neuroinformatics. 2018 Jan;16(1):3-13. doi: 10.1007/s12021-017-9341-1.

22.

Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies.

Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F.

BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):402. doi: 10.1186/s12859-017-1788-4.

23.

Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function.

Reimann MW, Nolte M, Scolamiero M, Turner K, Perin R, Chindemi G, Dłotko P, Levi R, Hess K, Markram H.

Front Comput Neurosci. 2017 Jun 12;11:48. doi: 10.3389/fncom.2017.00048. eCollection 2017.

24.

Morphological Diversity Strongly Constrains Synaptic Connectivity and Plasticity.

Reimann MW, Horlemann AL, Ramaswamy S, Muller EB, Markram H.

Cereb Cortex. 2017 Sep 1;27(9):4570-4585. doi: 10.1093/cercor/bhx150.

PMID:
28637203
25.

Rich cell-type-specific network topology in neocortical microcircuitry.

Gal E, London M, Globerson A, Ramaswamy S, Reimann MW, Muller E, Markram H, Segev I.

Nat Neurosci. 2017 Jul;20(7):1004-1013. doi: 10.1038/nn.4576. Epub 2017 Jun 5.

PMID:
28581480
26.

Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation.

Abdellah M, Bilgili A, Eilemann S, Shillcock J, Markram H, Schürmann F.

BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):62. doi: 10.1186/s12859-016-1444-4.

27.

BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience.

Van Geit W, Gevaert M, Chindemi G, Rössert C, Courcol JD, Muller EB, Schürmann F, Segev I, Markram H.

Front Neuroinform. 2016 Jun 7;10:17. doi: 10.3389/fninf.2016.00017. eCollection 2016.

28.

Tight Coupling of Astrocyte pH Dynamics to Epileptiform Activity Revealed by Genetically Encoded pH Sensors.

Raimondo JV, Tomes H, Irkle A, Kay L, Kellaway L, Markram H, Millar RP, Akerman CJ.

J Neurosci. 2016 Jun 29;36(26):7002-13. doi: 10.1523/JNEUROSCI.0664-16.2016.

29.

From Neuron Biophysics to Orientation Selectivity in Electrically Coupled Networks of Neocortical L2/3 Large Basket Cells.

Amsalem O, Van Geit W, Muller E, Markram H, Segev I.

Cereb Cortex. 2016 Aug;26(8):3655-3668. doi: 10.1093/cercor/bhw166. Epub 2016 Jun 9.

30.

An algorithm to predict the connectome of neural microcircuits.

Reimann MW, King JG, Muller EB, Ramaswamy S, Markram H.

Front Comput Neurosci. 2015 Oct 8;9:120. doi: 10.3389/fncom.2015.00120. eCollection 2015.

31.

The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex.

Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, Gleeson P, Graham JW, Hernando JB, Kanari L, Katkov Y, Keller D, King JG, Ranjan R, Reimann MW, Rössert C, Shi Y, Shillcock JC, Telefont M, Van Geit W, Diaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Muller J, Segev I, Schürmann F, Muller EB, Markram H.

Front Neural Circuits. 2015 Oct 8;9:44. doi: 10.3389/fncir.2015.00044. eCollection 2015. No abstract available.

32.

Reconstruction and Simulation of Neocortical Microcircuitry.

Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, Chindemi G, Courcol JD, Delalondre F, Delattre V, Druckmann S, Dumusc R, Dynes J, Eilemann S, Gal E, Gevaert ME, Ghobril JP, Gidon A, Graham JW, Gupta A, Haenel V, Hay E, Heinis T, Hernando JB, Hines M, Kanari L, Keller D, Kenyon J, Khazen G, Kim Y, King JG, Kisvarday Z, Kumbhar P, Lasserre S, Le Bé JV, Magalhães BR, Merchán-Pérez A, Meystre J, Morrice BR, Muller J, Muñoz-Céspedes A, Muralidhar S, Muthurasa K, Nachbaur D, Newton TH, Nolte M, Ovcharenko A, Palacios J, Pastor L, Perin R, Ranjan R, Riachi I, Rodríguez JR, Riquelme JL, Rössert C, Sfyrakis K, Shi Y, Shillcock JC, Silberberg G, Silva R, Tauheed F, Telefont M, Toledo-Rodriguez M, Tränkler T, Van Geit W, Díaz JV, Walker R, Wang Y, Zaninetta SM, DeFelipe J, Hill SL, Segev I, Schürmann F.

Cell. 2015 Oct 8;163(2):456-92. doi: 10.1016/j.cell.2015.09.029.

33.

Physically-based in silico light sheet microscopy for visualizing fluorescent brain models.

Abdellah M, Bilgili A, Eilemann S, Markram H, Schürmann F.

BMC Bioinformatics. 2015;16 Suppl 11:S8. doi: 10.1186/1471-2105-16-S11-S8. Epub 2015 Aug 13.

34.

Anatomy and physiology of the thick-tufted layer 5 pyramidal neuron.

Ramaswamy S, Markram H.

Front Cell Neurosci. 2015 Jun 26;9:233. doi: 10.3389/fncel.2015.00233. eCollection 2015. Review.

35.

Network-timing-dependent plasticity.

Delattre V, Keller D, Perich M, Markram H, Muller EB.

Front Cell Neurosci. 2015 Jun 9;9:220. doi: 10.3389/fncel.2015.00220. eCollection 2015.

36.

Predictable enriched environment prevents development of hyper-emotionality in the VPA rat model of autism.

Favre MR, La Mendola D, Meystre J, Christodoulou D, Cochrane MJ, Markram H, Markram K.

Front Neurosci. 2015 Jun 2;9:127. doi: 10.3389/fnins.2015.00127. eCollection 2015.

37.

Cell type- and activity-dependent extracellular correlates of intracellular spiking.

Anastassiou CA, Perin R, Buzsáki G, Markram H, Koch C.

J Neurophysiol. 2015 Jul;114(1):608-23. doi: 10.1152/jn.00628.2014. Epub 2015 May 20.

38.

An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse.

Keller D, Babai N, Kochubey O, Han Y, Markram H, Schürmann F, Schneggenburger R.

PLoS Comput Biol. 2015 May 7;11(5):e1004253. doi: 10.1371/journal.pcbi.1004253. eCollection 2015 May.

39.

A versatile clearing agent for multi-modal brain imaging.

Costantini I, Ghobril JP, Di Giovanna AP, Allegra Mascaro AL, Silvestri L, Müllenbroich MC, Onofri L, Conti V, Vanzi F, Sacconi L, Guerrini R, Markram H, Iannello G, Pavone FS.

Sci Rep. 2015 May 7;5:9808. doi: 10.1038/srep09808.

40.

The future of human cerebral cartography: a novel approach.

Frackowiak R, Markram H.

Philos Trans R Soc Lond B Biol Sci. 2015 May 19;370(1668). pii: 20140171. doi: 10.1098/rstb.2014.0171. Review.

41.

Anti-obesity and anti-hyperglycemic effects of cinnamaldehyde via altered ghrelin secretion and functional impact on food intake and gastric emptying.

Camacho S, Michlig S, de Senarclens-Bezençon C, Meylan J, Meystre J, Pezzoli M, Markram H, le Coutre J.

Sci Rep. 2015 Jan 21;5:7919. doi: 10.1038/srep07919.

42.

Dampened neural activity and abolition of epileptic-like activity in cortical slices by active ingredients of spices.

Pezzoli M, Elhamdani A, Camacho S, Meystre J, González SM, le Coutre J, Markram H.

Sci Rep. 2014 Oct 31;4:6825. doi: 10.1038/srep06825.

43.

The death of Cajal and the end of scientific romanticism and individualism.

DeFelipe J, Garrido E, Markram H.

Trends Neurosci. 2014 Oct;37(10):525-7. doi: 10.1016/j.tins.2014.08.002. No abstract available.

PMID:
25288199
44.

Single-cell RT-PCR, a technique to decipher the electrical, anatomical, and genetic determinants of neuronal diversity.

Toledo-Rodriguez M, Markram H.

Methods Mol Biol. 2014;1183:143-58. doi: 10.1007/978-1-4939-1096-0_8.

PMID:
25023306
45.

Synaptic and cellular organization of layer 1 of the developing rat somatosensory cortex.

Muralidhar S, Wang Y, Markram H.

Front Neuroanat. 2014 Jan 16;7:52. doi: 10.3389/fnana.2013.00052. eCollection 2013.

46.

A computer-assisted multi-electrode patch-clamp system.

Perin R, Markram H.

J Vis Exp. 2013 Oct 18;(80):e50630. doi: 10.3791/50630.

47.

Seven challenges for neuroscience.

Markram H.

Funct Neurol. 2013 Jul-Sep;28(3):145-51. doi: 10.11138/FNeur/2013.28.3.144. Review.

48.

Nlgn4 knockout induces network hypo-excitability in juvenile mouse somatosensory cortex in vitro.

Delattre V, La Mendola D, Meystre J, Markram H, Markram K.

Sci Rep. 2013 Oct 9;3:2897. doi: 10.1038/srep02897.

49.

Neuroscience thinks big (and collaboratively).

Kandel ER, Markram H, Matthews PM, Yuste R, Koch C.

Nat Rev Neurosci. 2013 Sep;14(9):659-64. doi: 10.1038/nrn3578. Review.

PMID:
23958663
50.

General developmental health in the VPA-rat model of autism.

Favre MR, Barkat TR, Lamendola D, Khazen G, Markram H, Markram K.

Front Behav Neurosci. 2013 Jul 24;7:88. doi: 10.3389/fnbeh.2013.00088. eCollection 2013.

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