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Items: 1 to 50 of 208

1.

Physics and Biology (of Chromosomes).

Marko JF.

J Mol Biol. 2020 Jan 17;432(2):621-631. doi: 10.1016/j.jmb.2019.11.022. Epub 2019 Dec 20.

PMID:
31866291
2.

Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures.

Brahmachari S, Marko JF.

Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):24956-24965. doi: 10.1073/pnas.1906355116. Epub 2019 Nov 22.

PMID:
31757850
3.

Eligibility and Radiologic Assessment for Adjuvant Clinical Trials in Kidney Cancer.

Agrawal S, Haas NB, Bagheri M, Lane BR, Coleman J, Hammers H, Bratslavsky G, Chauhan C, Kim L, Krishnasamy VP, Marko J, Maher VE, Ibrahim A, Cross F Jr, Liu K, Beaver JA, Pazdur R, Blumenthal GM, Singh H, Plimack ER, Choueiri TK, Uzzo R, Apolo AB.

JAMA Oncol. 2019 Nov 21. doi: 10.1001/jamaoncol.2019.4117. [Epub ahead of print]

PMID:
31750870
4.

Individualizing Management of Infertility in Classic Congenital Adrenal Hyperplasia and Testicular Adrenal Rest Tumors.

Jha S, El-Maouche D, Marko J, Mallappa A, Veeraraghavan P, Merke DP.

J Endocr Soc. 2019 Oct 17;3(12):2290-2294. doi: 10.1210/js.2019-00227. eCollection 2019 Dec 1.

5.

Eligibility and Radiologic Assessment in Adjuvant Clinical Trials in Bladder Cancer.

Apolo AB, Milowsky MI, Kim L, Inman BA, Kamat AM, Steinberg G, Bagheri M, Krishnasamy VP, Marko J, Dinney CP, Bangs R, Sweis RF, Maher VE, Ibrahim A, Liu K, Werntz R, Cross F, Beaver JA, Singh H, Pazdur R, Blumenthal GM, Lerner SP, Bajorin DF, Rosenberg JE, Agrawal S.

JAMA Oncol. 2019 Oct 31:1-9. doi: 10.1001/jamaoncol.2019.4114. [Epub ahead of print]

PMID:
31670753
6.

Clinical symptoms and associated vascular imaging findings in Takayasu's arteritis compared to giant cell arteritis.

Michailidou D, Rosenblum JS, Rimland CA, Marko J, Ahlman MA, Grayson PC.

Ann Rheum Dis. 2020 Feb;79(2):262-267. doi: 10.1136/annrheumdis-2019-216145. Epub 2019 Oct 24.

PMID:
31649025
7.

How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation.

Erbaş A, Marko JF.

Curr Opin Chem Biol. 2019 Dec;53:118-124. doi: 10.1016/j.cbpa.2019.08.007. Epub 2019 Oct 2. Review.

PMID:
31586479
8.

Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force.

Renn JP, Bhattacharyya S, Bai H, He C, Li H, Oberhauser AF, Marko JF, Makarov DE, Matouschek A.

Sci Rep. 2019 Jul 31;9(1):11101. doi: 10.1038/s41598-019-46525-w.

9.

Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation.

Stephens AD, Liu PZ, Kandula V, Chen H, Almassalha LM, Herman C, Backman V, O'Halloran T, Adam SA, Goldman RD, Banigan EJ, Marko JF.

Mol Biol Cell. 2019 Aug 1;30(17):2320-2330. doi: 10.1091/mbc.E19-05-0286.

10.

Mucinous Neoplasms of the Ovary: Radiologic-Pathologic Correlation.

Marko J, Marko KI, Pachigolla SL, Crothers BA, Mattu R, Wolfman DJ.

Radiographics. 2019 Jul-Aug;39(4):982-997. doi: 10.1148/rg.2019180221.

PMID:
31283462
11.

Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation.

Stephens AD, Liu PZ, Kandula V, Chen H, Almassalha LM, Herman C, Backman V, O'Halloran T, Adam SA, Goldman RD, Banigan EJ, Marko JF.

Mol Biol Cell. 2019 Jun 19:mbcE19050286T. doi: 10.1091/mbc.E19-05-0286-T. [Epub ahead of print]

PMID:
31216230
12.

DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes.

Marko JF, De Los Rios P, Barducci A, Gruber S.

Nucleic Acids Res. 2019 Jul 26;47(13):6956-6972. doi: 10.1093/nar/gkz497.

13.

Receptor-Ligand Rebinding Kinetics in Confinement.

Erbaş A, Olvera de la Cruz M, Marko JF.

Biophys J. 2019 May 7;116(9):1609-1624. doi: 10.1016/j.bpj.2019.02.033. Epub 2019 Apr 5.

PMID:
31029377
14.

Twist-bend coupling and the statistical mechanics of the twistable wormlike-chain model of DNA: Perturbation theory and beyond.

Nomidis SK, Skoruppa E, Carlon E, Marko JF.

Phys Rev E. 2019 Mar;99(3-1):032414. doi: 10.1103/PhysRevE.99.032414.

PMID:
30999490
15.

Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm.

Gladstein S, Almassalha LM, Cherkezyan L, Chandler JE, Eshein A, Eid A, Zhang D, Wu W, Bauer GM, Stephens AD, Morochnik S, Subramanian H, Marko JF, Ameer GA, Szleifer I, Backman V.

Nat Commun. 2019 Apr 10;10(1):1652. doi: 10.1038/s41467-019-09717-6.

16.

Interreader Variability of Prostate Imaging Reporting and Data System Version 2 in Detecting and Assessing Prostate Cancer Lesions at Prostate MRI.

Greer MD, Shih JH, Lay N, Barrett T, Bittencourt L, Borofsky S, Kabakus I, Law YM, Marko J, Shebel H, Merino MJ, Wood BJ, Pinto PA, Summers RM, Choyke PL, Turkbey B.

AJR Am J Roentgenol. 2019 Mar 27:1-8. doi: 10.2214/AJR.18.20536. [Epub ahead of print]

PMID:
30917023
17.

Chromatin's physical properties shape the nucleus and its functions.

Stephens AD, Banigan EJ, Marko JF.

Curr Opin Cell Biol. 2019 Jun;58:76-84. doi: 10.1016/j.ceb.2019.02.006. Epub 2019 Mar 16. Review.

PMID:
30889417
18.

Effects of altering histone posttranslational modifications on mitotic chromosome structure and mechanics.

Biggs R, Liu PZ, Stephens AD, Marko JF.

Mol Biol Cell. 2019 Mar 21;30(7):820-827. doi: 10.1091/mbc.E18-09-0592. Epub 2019 Jan 9.

19.

Electrochemical benzylic oxidation of C-H bonds.

Marko JA, Durgham A, Bretz SL, Liu W.

Chem Commun (Camb). 2019 Jan 17;55(7):937-940. doi: 10.1039/c8cc08768g.

PMID:
30601486
20.

DNA Mechanics and Topology.

Brahmachari S, Marko JF.

Adv Exp Med Biol. 2018;1092:11-39. doi: 10.1007/978-3-319-95294-9_2. Review.

PMID:
30368746
21.

Retroperitoneal Leiomyosarcoma From the Radiologic Pathology Archives.

Marko J, Wolfman DJ.

Radiographics. 2018 Sep-Oct;38(5):1403-1420. doi: 10.1148/rg.2018180006.

22.

Bend-Induced Twist Waves and the Structure of Nucleosomal DNA.

Skoruppa E, Nomidis SK, Marko JF, Carlon E.

Phys Rev Lett. 2018 Aug 24;121(8):088101. doi: 10.1103/PhysRevLett.121.088101.

23.

Condensin controls mitotic chromosome stiffness and stability without forming a structurally contiguous scaffold.

Sun M, Biggs R, Hornick J, Marko JF.

Chromosome Res. 2018 Dec;26(4):277-295. doi: 10.1007/s10577-018-9584-1. Epub 2018 Aug 24.

24.

Embedding health equity strategically within built environments.

Janzen C, Marko J, Schwandt M.

Can J Public Health. 2018 Aug;109(4):590-597. doi: 10.17269/s41997-018-0116-8. Epub 2018 Aug 10.

25.

Comparison of magnetic resonance angiography and 18F-fluorodeoxyglucose positron emission tomography in large-vessel vasculitis.

Quinn KA, Ahlman MA, Malayeri AA, Marko J, Civelek AC, Rosenblum JS, Bagheri AA, Merkel PA, Novakovich E, Grayson PC.

Ann Rheum Dis. 2018 Aug;77(8):1165-1171. doi: 10.1136/annrheumdis-2018-213102. Epub 2018 Apr 17.

26.

Computer-aided diagnosis prior to conventional interpretation of prostate mpMRI: an international multi-reader study.

Greer MD, Lay N, Shih JH, Barrett T, Bittencourt LK, Borofsky S, Kabakus I, Law YM, Marko J, Shebel H, Mertan FV, Merino MJ, Wood BJ, Pinto PA, Summers RM, Choyke PL, Turkbey B.

Eur Radiol. 2018 Oct;28(10):4407-4417. doi: 10.1007/s00330-018-5374-6. Epub 2018 Apr 12.

PMID:
29651763
27.

Effects of electrostatic interactions on ligand dissociation kinetics.

Erbaş A, de la Cruz MO, Marko JF.

Phys Rev E. 2018 Feb;97(2-1):022405. doi: 10.1103/PhysRevE.97.022405.

28.

Defect-facilitated buckling in supercoiled double-helix DNA.

Brahmachari S, Dittmore A, Takagi Y, Neuman KC, Marko JF.

Phys Rev E. 2018 Feb;97(2-1):022416. doi: 10.1103/PhysRevE.97.022416.

29.

Liver disturbances in activated phosphoinositide 3-kinase δ syndrome.

Ben-Yakov G, Kapuria D, Marko J, Cho MH, Pittaluga S, Kleiner DE, Koh C, Holland S, Uzel G, Heller T.

J Allergy Clin Immunol Pract. 2018 Sep - Oct;6(5):1763-1765. doi: 10.1016/j.jaip.2018.01.005. Epub 2018 Feb 16. No abstract available.

PMID:
29378322
30.

Separate roles for chromatin and lamins in nuclear mechanics.

Stephens AD, Banigan EJ, Marko JF.

Nucleus. 2018 Jan 1;9(1):119-124. doi: 10.1080/19491034.2017.1414118. Epub 2017 Dec 28.

31.

Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices.

Brahmachari S, Gunn KH, Giuntoli RD, Mondragón A, Marko JF.

Phys Rev Lett. 2017 Nov 3;119(18):188103. doi: 10.1103/PhysRevLett.119.188103. Epub 2017 Oct 31.

32.

Single-Molecule Magnetic Tweezer Analysis of Topoisomerases.

Gunn KH, Marko JF, Mondragón A.

Methods Mol Biol. 2018;1703:139-152. doi: 10.1007/978-1-4939-7459-7_10.

33.

Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins.

Stephens AD, Liu PZ, Banigan EJ, Almassalha LM, Backman V, Adam SA, Goldman RD, Marko JF.

Mol Biol Cell. 2018 Jan 15;29(2):220-233. doi: 10.1091/mbc.E17-06-0410. Epub 2017 Nov 15.

34.

Oligomerization and ATP stimulate condensin-mediated DNA compaction.

Keenholtz RA, Dhanaraman T, Palou R, Yu J, D'Amours D, Marko JF.

Sci Rep. 2017 Oct 27;7(1):14279. doi: 10.1038/s41598-017-14701-5.

35.

Supercoiling DNA Locates Mismatches.

Dittmore A, Brahmachari S, Takagi Y, Marko JF, Neuman KC.

Phys Rev Lett. 2017 Oct 6;119(14):147801. doi: 10.1103/PhysRevLett.119.147801. Epub 2017 Oct 3.

36.

Mechanics and Buckling of Biopolymeric Shells and Cell Nuclei.

Banigan EJ, Stephens AD, Marko JF.

Biophys J. 2017 Oct 17;113(8):1654-1663. doi: 10.1016/j.bpj.2017.08.034.

37.

Validation of the Dominant Sequence Paradigm and Role of Dynamic Contrast-enhanced Imaging in PI-RADS Version 2.

Greer MD, Shih JH, Lay N, Barrett T, Kayat Bittencourt L, Borofsky S, Kabakus IM, Law YM, Marko J, Shebel H, Mertan FV, Merino MJ, Wood BJ, Pinto PA, Summers RM, Choyke PL, Turkbey B.

Radiology. 2017 Dec;285(3):859-869. doi: 10.1148/radiol.2017161316. Epub 2017 Jul 19.

38.

Reproducibility of 24-h heart rate variability in children.

Bjelakovic B, Ilic D, Lukic S, Vukomanovic V, Zarko C, Stankovic Z, Marko J.

Clin Auton Res. 2017 Aug;27(4):273-278. doi: 10.1007/s10286-017-0445-3. Epub 2017 Jun 30.

PMID:
28667574
39.

Torque and buckling in stretched intertwined double-helix DNAs.

Brahmachari S, Marko JF.

Phys Rev E. 2017 May;95(5-1):052401. doi: 10.1103/PhysRevE.95.052401. Epub 2017 May 1.

40.

Testicular Seminoma and Its Mimics: From the Radiologic Pathology Archives.

Marko J, Wolfman DJ, Aubin AL, Sesterhenn IA.

Radiographics. 2017 Jul-Aug;37(4):1085-1098. doi: 10.1148/rg.2017160164. Epub 2017 Jun 2. Review.

41.

A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN.

PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017.

42.

11-Oxygenated Androgens Are Biomarkers of Adrenal Volume and Testicular Adrenal Rest Tumors in 21-Hydroxylase Deficiency.

Turcu AF, Mallappa A, Elman MS, Avila NA, Marko J, Rao H, Tsodikov A, Auchus RJ, Merke DP.

J Clin Endocrinol Metab. 2017 Aug 1;102(8):2701-2710. doi: 10.1210/jc.2016-3989.

43.

An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases.

Gunn KH, Marko JF, Mondragón A.

Nat Struct Mol Biol. 2017 May;24(5):484-490. doi: 10.1038/nsmb.3401. Epub 2017 Apr 17.

44.

Facilitated dissociation of transcription factors from single DNA binding sites.

Kamar RI, Banigan EJ, Erbas A, Giuntoli RD, Olvera de la Cruz M, Johnson RC, Marko JF.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3251-E3257. doi: 10.1073/pnas.1701884114. Epub 2017 Mar 31.

45.

Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus.

Stephens AD, Banigan EJ, Adam SA, Goldman RD, Marko JF.

Mol Biol Cell. 2017 Jul 7;28(14):1984-1996. doi: 10.1091/mbc.E16-09-0653. Epub 2017 Jan 5.

46.

Crossover-site sequence and DNA torsional stress control strand interchanges by the Bxb1 site-specific serine recombinase.

Keenholtz RA, Grindley ND, Hatfull GF, Marko JF.

Nucleic Acids Res. 2016 Oct 14;44(18):8921-8932. Epub 2016 Aug 22.

47.

Accuracy and agreement of PIRADSv2 for prostate cancer mpMRI: A multireader study.

Greer MD, Brown AM, Shih JH, Summers RM, Marko J, Law YM, Sankineni S, George AK, Merino MJ, Pinto PA, Choyke PL, Turkbey B.

J Magn Reson Imaging. 2017 Feb;45(2):579-585. doi: 10.1002/jmri.25372. Epub 2016 Jul 8.

PMID:
27391860
48.

Cell division: A sticky problem for chromosomes.

Brangwynne CP, Marko JF.

Nature. 2016 Jul 14;535(7611):234-5. doi: 10.1038/nature18904. Epub 2016 Jun 29. No abstract available.

PMID:
27362225
49.

An assay for 26S proteasome activity based on fluorescence anisotropy measurements of dye-labeled protein substrates.

Bhattacharyya S, Renn JP, Yu H, Marko JF, Matouschek A.

Anal Biochem. 2016 Sep 15;509:50-59. doi: 10.1016/j.ab.2016.05.026. Epub 2016 Jun 11.

50.

Chromosome Compaction by Active Loop Extrusion.

Goloborodko A, Marko JF, Mirny LA.

Biophys J. 2016 May 24;110(10):2162-8. doi: 10.1016/j.bpj.2016.02.041.

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