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Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis.

Hinzke T, Kleiner M, Breusing C, Felbeck H, Häsler R, Sievert SM, Schlüter R, Rosenstiel P, Reusch TBH, Schweder T, Markert S.

mBio. 2019 Dec 17;10(6). pii: e02243-19. doi: 10.1128/mBio.02243-19.


Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions.

Ponnudurai R, Heiden SE, Sayavedra L, Hinzke T, Kleiner M, Hentschker C, Felbeck H, Sievert SM, Schlüter R, Becher D, Schweder T, Markert S.

ISME J. 2019 Nov 4. doi: 10.1038/s41396-019-0517-6. [Epub ahead of print]


A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion.

Jahn MT, Arkhipova K, Markert SM, Stigloher C, Lachnit T, Pita L, Kupczok A, Ribes M, Stengel ST, Rosenstiel P, Dutilh BE, Hentschel U.

Cell Host Microbe. 2019 Oct 9;26(4):542-550.e5. doi: 10.1016/j.chom.2019.08.019. Epub 2019 Sep 24.


Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium.

Fischer T, Schorb M, Reintjes G, Kolovou A, Santarella-Mellwig R, Markert S, Rhiel E, Littmann S, Becher D, Schweder T, Harder J.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e00829-19. doi: 10.1128/AEM.00829-19. Print 2019 Oct 1.


A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.

Reisky L, Préchoux A, Zühlke MK, Bäumgen M, Robb CS, Gerlach N, Roret T, Stanetty C, Larocque R, Michel G, Song T, Markert S, Unfried F, Mihovilovic MD, Trautwein-Schult A, Becher D, Schweder T, Bornscheuer UT, Hehemann JH.

Nat Chem Biol. 2019 Aug;15(8):803-812. doi: 10.1038/s41589-019-0311-9. Epub 2019 Jul 8.


Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M, Mooshammer M, Markert S, Turaev D, Becher D, Rattei T, Schweder T, Richter A, Watzka M, Nielsen PH, Wagner M.

Environ Microbiol. 2019 Oct;21(10):3831-3854. doi: 10.1111/1462-2920.14732. Epub 2019 Jul 25.


Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.

Herlemann DPR, Markert S, Meeske C, Andersson AF, de Bruijn I, Hentschker C, Unfried F, Becher D, Jürgens K, Schweder T.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00825-19. doi: 10.1128/AEM.00825-19. Print 2019 Aug 1.


Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses.

Meier DV, Pjevac P, Bach W, Markert S, Schweder T, Jamieson J, Petersen S, Amann R, Meyerdierks A.

Environ Microbiol. 2019 Feb;21(2):682-701. doi: 10.1111/1462-2920.14514. Epub 2019 Jan 21.


Effects of hypoxia-reoxygenation stress on mitochondrial proteome and bioenergetics of the hypoxia-tolerant marine bivalve Crassostrea gigas.

Sokolov EP, Markert S, Hinzke T, Hirschfeld C, Becher D, Ponsuksili S, Sokolova IM.

J Proteomics. 2019 Mar 1;194:99-111. doi: 10.1016/j.jprot.2018.12.009. Epub 2018 Dec 12.


Automated and enhanced clone screening using a fully automated microtiter plate-based system for suspension cell culture.

Markert S, Musmann C, Hülsmann P, Joeris K.

Biotechnol Prog. 2019 Mar;35(2):e2760. doi: 10.1002/btpr.2760. Epub 2019 Jan 9.


Transcriptomic and proteomic insight into the mechanism of cyclooctasulfur- versus thiosulfate-oxidation by the chemolithoautotroph Sulfurimonas denitrificans.

Götz F, Pjevac P, Markert S, McNichol J, Becher D, Schweder T, Mussmann M, Sievert SM.

Environ Microbiol. 2019 Jan;21(1):244-258. doi: 10.1111/1462-2920.14452. Epub 2018 Nov 26.


Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning.

Kaltdorf KV, Theiss M, Markert SM, Zhen M, Dandekar T, Stigloher C, Kollmannsberger P.

PLoS One. 2018 Oct 8;13(10):e0205348. doi: 10.1371/journal.pone.0205348. eCollection 2018.


Centrifugation-Based Enrichment of Bacterial Cell Populations for Metaproteomic Studies on Bacteria-Invertebrate Symbioses.

Hinzke T, Kleiner M, Markert S.

Methods Mol Biol. 2018;1841:319-334. doi: 10.1007/978-1-4939-8695-8_22.


Alpha- and beta-mannan utilization by marine Bacteroidetes.

Chen J, Robb CS, Unfried F, Kappelmann L, Markert S, Song T, Harder J, Avcı B, Becher D, Xie P, Amann RI, Hehemann JH, Schweder T, Teeling H.

Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16.


Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.

Kappelmann L, Krüger K, Hehemann JH, Harder J, Markert S, Unfried F, Becher D, Shapiro N, Schweder T, Amann RI, Teeling H.

ISME J. 2019 Jan;13(1):76-91. doi: 10.1038/s41396-018-0242-6. Epub 2018 Aug 15.


Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms.

Unfried F, Becker S, Robb CS, Hehemann JH, Markert S, Heiden SE, Hinzke T, Becher D, Reintjes G, Krüger K, Avcı B, Kappelmann L, Hahnke RL, Fischer T, Harder J, Teeling H, Fuchs B, Barbeyron T, Amann RI, Schweder T.

ISME J. 2018 Dec;12(12):2894-2906. doi: 10.1038/s41396-018-0243-5. Epub 2018 Jul 30.


Limonene dehydrogenase hydroxylates the allylic methyl group of cyclic monoterpenes in the anaerobic terpene degradation by Castellaniella defragrans.

Puentes-Cala E, Liebeke M, Markert S, Harder J.

J Biol Chem. 2018 Jun 15;293(24):9520-9529. doi: 10.1074/jbc.RA117.001557. Epub 2018 May 1.


Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys.

Pjevac P, Meier DV, Markert S, Hentschker C, Schweder T, Becher D, Gruber-Vodicka HR, Richter M, Bach W, Amann R, Meyerdierks A.

Front Microbiol. 2018 Apr 6;9:680. doi: 10.3389/fmicb.2018.00680. eCollection 2018.


Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase.

Link J, Paouneskou D, Velkova M, Daryabeigi A, Laos T, Labella S, Barroso C, Pacheco Piñol S, Montoya A, Kramer H, Woglar A, Baudrimont A, Markert SM, Stigloher C, Martinez-Perez E, Dammermann A, Alsheimer M, Zetka M, Jantsch V.

Dev Cell. 2018 Apr 23;45(2):212-225.e7. doi: 10.1016/j.devcel.2018.03.018.


Anaerobic Degradation of Bicyclic Monoterpenes in Castellaniella defragrans.

Puentes-Cala E, Liebeke M, Markert S, Harder J.

Metabolites. 2018 Feb 7;8(1). pii: E12. doi: 10.3390/metabo8010012.


Membrane Microdomain Disassembly Inhibits MRSA Antibiotic Resistance.

García-Fernández E, Koch G, Wagner RM, Fekete A, Stengel ST, Schneider J, Mielich-Süss B, Geibel S, Markert SM, Stigloher C, Lopez D.

Cell. 2017 Nov 30;171(6):1354-1367.e20. doi: 10.1016/j.cell.2017.10.012. Epub 2017 Nov 2.


Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.

Ponnudurai R, Sayavedra L, Kleiner M, Heiden SE, Thürmer A, Felbeck H, Schlüter R, Sievert SM, Daniel R, Schweder T, Markert S.

Stand Genomic Sci. 2017 Sep 2;12:50. doi: 10.1186/s40793-017-0266-y. eCollection 2017.


Exploiting fine-scale genetic and physiological variation of closely related microbes to reveal unknown enzyme functions.

Badur AH, Plutz MJ, Yalamanchili G, Jagtap SS, Schweder T, Unfried F, Markert S, Polz MF, Hehemann JH, Rao CV.

J Biol Chem. 2017 Aug 4;292(31):13056-13067. doi: 10.1074/jbc.M117.787192. Epub 2017 Jun 7.


Minimal resin embedding of multicellular specimens for targeted FIB-SEM imaging.

Schieber NL, Machado P, Markert SM, Stigloher C, Schwab Y, Steyer AM.

Methods Cell Biol. 2017;140:69-83. doi: 10.1016/bs.mcb.2017.03.005. Epub 2017 Apr 13.


3D subcellular localization with superresolution array tomography on ultrathin sections of various species.

Markert SM, Bauer V, Muenz TS, Jones NG, Helmprobst F, Britz S, Sauer M, Rössler W, Engstler M, Stigloher C.

Methods Cell Biol. 2017;140:21-47. doi: 10.1016/bs.mcb.2017.03.004. Epub 2017 Apr 19.


Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans.

Giovannelli D, Sievert SM, Hügler M, Markert S, Becher D, Schweder T, Vetriani C.

Elife. 2017 Apr 24;6. pii: e18990. doi: 10.7554/eLife.18990.


Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis.

Ponnudurai R, Kleiner M, Sayavedra L, Petersen JM, Moche M, Otto A, Becher D, Takeuchi T, Satoh N, Dubilier N, Schweder T, Markert S.

ISME J. 2017 Feb;11(2):463-477. doi: 10.1038/ismej.2016.124. Epub 2016 Nov 1.


Shedding light on cell compartmentation in the candidate phylum Poribacteria by high resolution visualisation and transcriptional profiling.

Jahn MT, Markert SM, Ryu T, Ravasi T, Stigloher C, Hentschel U, Moitinho-Silva L.

Sci Rep. 2016 Oct 31;6:35860. doi: 10.1038/srep35860.


Nitrogen fixation in a chemoautotrophic lucinid symbiosis.

König S, Gros O, Heiden SE, Hinzke T, Thürmer A, Poehlein A, Meyer S, Vatin M, Mbéguié-A-Mbéguié D, Tocny J, Ponnudurai R, Daniel R, Becher D, Schweder T, Markert S.

Nat Microbiol. 2016 Oct 24;2:16193. doi: 10.1038/nmicrobiol.2016.193.


Establishment of a fully automated microtiter plate-based system for suspension cell culture and its application for enhanced process optimization.

Markert S, Joeris K.

Biotechnol Bioeng. 2017 Jan;114(1):113-121. doi: 10.1002/bit.26044. Epub 2016 Jul 19.


Filling the gap: adding super-resolution to array tomography for correlated ultrastructural and molecular identification of electrical synapses at the C. elegans connectome.

Markert SM, Britz S, Proppert S, Lang M, Witvliet D, Mulcahy B, Sauer M, Zhen M, Bessereau JL, Stigloher C.

Neurophotonics. 2016 Oct;3(4):041802. doi: 10.1117/1.NPh.3.4.041802. Epub 2016 May 4.


The anaerobic linalool metabolism in Thauera linaloolentis 47 Lol.

Marmulla R, Cala EP, Markert S, Schweder T, Harder J.

BMC Microbiol. 2016 Apr 27;16:76. doi: 10.1186/s12866-016-0693-8.


Linalool isomerase, a membrane-anchored enzyme in the anaerobic monoterpene degradation in Thauera linaloolentis 47Lol.

Marmulla R, Šafarić B, Markert S, Schweder T, Harder J.

BMC Biochem. 2016 Mar 15;17:6. doi: 10.1186/s12858-016-0062-0.


Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels.

Sayavedra L, Kleiner M, Ponnudurai R, Wetzel S, Pelletier E, Barbe V, Satoh N, Shoguchi E, Fink D, Breusing C, Reusch TB, Rosenstiel P, Schilhabel MB, Becher D, Schweder T, Markert S, Dubilier N, Petersen JM.

Elife. 2015 Sep 15;4:e07966. doi: 10.7554/eLife.07966.


Evidence for functional and dynamic microcompartmentation of Cav-1/TRPV4/K(Ca) in caveolae of endothelial cells.

Goedicke-Fritz S, Kaistha A, Kacik M, Markert S, Hofmeister A, Busch C, Bänfer S, Jacob R, Grgic I, Hoyer J.

Eur J Cell Biol. 2015 Jul-Sep;94(7-9):391-400. doi: 10.1016/j.ejcb.2015.06.002. Epub 2015 Jun 2.


Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom.

Xing P, Hahnke RL, Unfried F, Markert S, Huang S, Barbeyron T, Harder J, Becher D, Schweder T, Glöckner FO, Amann RI, Teeling H.

ISME J. 2015 Jun;9(6):1410-22. doi: 10.1038/ismej.2014.225. Epub 2014 Dec 5.


The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen.

Petasch J, Disch EM, Markert S, Becher D, Schweder T, Hüttel B, Reinhardt R, Harder J.

BMC Microbiol. 2014 Jun 21;14:164. doi: 10.1186/1471-2180-14-164.


Expression site attenuation mechanistically links antigenic variation and development in Trypanosoma brucei.

Batram C, Jones NG, Janzen CJ, Markert SM, Engstler M.

Elife. 2014 May 20;3:e02324. doi: 10.7554/eLife.02324.


The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.

Heinz E, Williams TA, Nakjang S, Noël CJ, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Becher D, Bernhardt J, Dagan T, Hacker C, Lucocq JM, Schweder T, Rattei T, Hall N, Hirt RP, Embley TM.

PLoS Pathog. 2012;8(10):e1002979. doi: 10.1371/journal.ppat.1002979. Epub 2012 Oct 25.


'Y'Scenedesmus (Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited.

Markert SM, Müller T, Koetschan C, Friedl T, Wolf M.

Plant Biol (Stuttg). 2012 Nov;14(6):987-96. doi: 10.1111/j.1438-8677.2012.00576.x. Epub 2012 May 28.


Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use.

Kleiner M, Wentrup C, Lott C, Teeling H, Wetzel S, Young J, Chang YJ, Shah M, VerBerkmoes NC, Zarzycki J, Fuchs G, Markert S, Hempel K, Voigt B, Becher D, Liebeke M, Lalk M, Albrecht D, Hecker M, Schweder T, Dubilier N.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):E1173-82. doi: 10.1073/pnas.1121198109. Epub 2012 Apr 18.


Development of an automated, multiwell plate based screening system for suspension cell culture.

Markert S, Joeris K.

BMC Proc. 2011 Nov 22;5 Suppl 8:O9. doi: 10.1186/1753-6561-5-S8-O9. eCollection 2011. No abstract available.


Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics.

Gardebrecht A, Markert S, Sievert SM, Felbeck H, Thürmer A, Albrecht D, Wollherr A, Kabisch J, Le Bris N, Lehmann R, Daniel R, Liesegang H, Hecker M, Schweder T.

ISME J. 2012 Apr;6(4):766-76. doi: 10.1038/ismej.2011.137. Epub 2011 Oct 20.


Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont.

Markert S, Gardebrecht A, Felbeck H, Sievert SM, Klose J, Becher D, Albrecht D, Thürmer A, Daniel R, Kleiner M, Hecker M, Schweder T.

Proteomics. 2011 Aug;11(15):3106-17. doi: 10.1002/pmic.201100059. Epub 2011 Jun 28.


The use of cryotherapy after a total knee replacement: a literature review.

Markert SE.

Orthop Nurs. 2011 Jan-Feb;30(1):29-36. doi: 10.1097/NOR.0b013e318205749a. Review.


Cytoplasmic and periplasmic proteomic signatures of exponentially growing cells of the psychrophilic bacterium Pseudoalteromonas haloplanktis TAC125.

Wilmes B, Kock H, Glagla S, Albrecht D, Voigt B, Markert S, Gardebrecht A, Bode R, Danchin A, Feller G, Hecker M, Schweder T.

Appl Environ Microbiol. 2011 Feb;77(4):1276-83. doi: 10.1128/AEM.01750-10. Epub 2010 Dec 23.


Good prediction of the likelihood for sentinel lymph node metastasis by using the MSKCC nomogram in a German breast cancer population.

Klar M, Foeldi M, Markert S, Gitsch G, Stickeler E, Watermann D.

Ann Surg Oncol. 2009 May;16(5):1136-42. doi: 10.1245/s10434-009-0399-3. Epub 2009 Mar 4.


Alpha-folate receptor expression in epithelial ovarian carcinoma and non-neoplastic ovarian tissue.

Markert S, Lassmann S, Gabriel B, Klar M, Werner M, Gitsch G, Kratz F, Hasenburg A.

Anticancer Res. 2008 Nov-Dec;28(6A):3567-72.


Proteomics of marine bacteria.

Schweder T, Markert S, Hecker M.

Electrophoresis. 2008 Jun;29(12):2603-16. doi: 10.1002/elps.200800009. Review.


Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila.

Markert S, Arndt C, Felbeck H, Becher D, Sievert SM, Hügler M, Albrecht D, Robidart J, Bench S, Feldman RA, Hecker M, Schweder T.

Science. 2007 Jan 12;315(5809):247-50.

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