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Items: 21


LaminA/C regulates epigenetic and chromatin architecture changes upon aging of hematopoietic stem cells.

Grigoryan A, Guidi N, Senger K, Liehr T, Soller K, Marka G, Vollmer A, Markaki Y, Leonhardt H, Buske C, Lipka DB, Plass C, Zheng Y, Mulaw MA, Geiger H, Florian MC.

Genome Biol. 2018 Nov 7;19(1):189. doi: 10.1186/s13059-018-1557-3.


Initial high-resolution microscopic mapping of active and inactive regulatory sequences proves non-random 3D arrangements in chromatin domain clusters.

Cremer M, Schmid VJ, Kraus F, Markaki Y, Hellmann I, Maiser A, Leonhardt H, John S, Stamatoyannopoulos J, Cremer T.

Epigenetics Chromatin. 2017 Aug 7;10(1):39. doi: 10.1186/s13072-017-0146-0.


Multivalent binding of PWWP2A to H2A.Z regulates mitosis and neural crest differentiation.

Pünzeler S, Link S, Wagner G, Keilhauer EC, Kronbeck N, Spitzer RM, Leidescher S, Markaki Y, Mentele E, Regnard C, Schneider K, Takahashi D, Kusakabe M, Vardabasso C, Zink LM, Straub T, Bernstein E, Harata M, Leonhardt H, Mann M, Rupp RA, Hake SB.

EMBO J. 2017 Aug 1;36(15):2263-2279. doi: 10.15252/embj.201695757. Epub 2017 Jun 23.


Strategic and practical guidelines for successful structured illumination microscopy.

Demmerle J, Innocent C, North AJ, Ball G, Müller M, Miron E, Matsuda A, Dobbie IM, Markaki Y, Schermelleh L.

Nat Protoc. 2017 May;12(5):988-1010. doi: 10.1038/nprot.2017.019. Epub 2017 Apr 13. Review.


Quantitative 3D structured illumination microscopy of nuclear structures.

Kraus F, Miron E, Demmerle J, Chitiashvili T, Budco A, Alle Q, Matsuda A, Leonhardt H, Schermelleh L, Markaki Y.

Nat Protoc. 2017 May;12(5):1011-1028. doi: 10.1038/nprot.2017.020. Epub 2017 Apr 13. Review.


Visualization of Genomic Loci in Living Cells with a Fluorescent CRISPR/Cas9 System.

Anton T, Leonhardt H, Markaki Y.

Methods Mol Biol. 2016;1411:407-17. doi: 10.1007/978-1-4939-3530-7_25.


4D Visualization of replication foci in mammalian cells corresponding to individual replicons.

Chagin VO, Casas-Delucchi CS, Reinhart M, Schermelleh L, Markaki Y, Maiser A, Bolius JJ, Bensimon A, Fillies M, Domaing P, Rozanov YM, Leonhardt H, Cardoso MC.

Nat Commun. 2016 Apr 7;7:11231. doi: 10.1038/ncomms11231.


Remodeling of nuclear landscapes during human myelopoietic cell differentiation maintains co-aligned active and inactive nuclear compartments.

Hübner B, Lomiento M, Mammoli F, Illner D, Markaki Y, Ferrari S, Cremer M, Cremer T.

Epigenetics Chromatin. 2015 Nov 17;8:47. doi: 10.1186/s13072-015-0038-0. eCollection 2015.


The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments.

Cremer T, Cremer M, Hübner B, Strickfaden H, Smeets D, Popken J, Sterr M, Markaki Y, Rippe K, Cremer C.

FEBS Lett. 2015 Oct 7;589(20 Pt A):2931-43. doi: 10.1016/j.febslet.2015.05.037. Epub 2015 May 28. Review.


A modular open platform for systematic functional studies under physiological conditions.

Mulholland CB, Smets M, Schmidtmann E, Leidescher S, Markaki Y, Hofweber M, Qin W, Manzo M, Kremmer E, Thanisch K, Bauer C, Rombaut P, Herzog F, Leonhardt H, Bultmann S.

Nucleic Acids Res. 2015 Sep 30;43(17):e112. doi: 10.1093/nar/gkv550. Epub 2015 May 24.


Gene-rich chromosomal regions are preferentially localized in the lamin B deficient nuclear blebs of atypical progeria cells.

Bercht Pfleghaar K, Taimen P, Butin-Israeli V, Shimi T, Langer-Freitag S, Markaki Y, Goldman AE, Wehnert M, Goldman RD.

Nucleus. 2015;6(1):66-76. doi: 10.1080/19491034.2015.1004256. Erratum in: Nucleus. 2015;6(3):247.


Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci.

Smeets D, Markaki Y, Schmid VJ, Kraus F, Tattermusch A, Cerase A, Sterr M, Fiedler S, Demmerle J, Popken J, Leonhardt H, Brockdorff N, Cremer T, Schermelleh L, Cremer M.

Epigenetics Chromatin. 2014 Apr 28;7:8. doi: 10.1186/1756-8935-7-8. eCollection 2014.


Visualization of specific DNA sequences in living mouse embryonic stem cells with a programmable fluorescent CRISPR/Cas system.

Anton T, Bultmann S, Leonhardt H, Markaki Y.

Nucleus. 2014 Mar-Apr;5(2):163-72. doi: 10.4161/nucl.28488. Epub 2014 Mar 12.


Fluorescence in situ hybridization applications for super-resolution 3D structured illumination microscopy.

Markaki Y, Smeets D, Cremer M, Schermelleh L.

Methods Mol Biol. 2013;950:43-64. doi: 10.1007/978-1-62703-137-0_4.


The imprinted NPAP1/C15orf2 gene in the Prader-Willi syndrome region encodes a nuclear pore complex associated protein.

Neumann LC, Markaki Y, Mladenov E, Hoffmann D, Buiting K, Horsthemke B.

Hum Mol Genet. 2012 Sep 15;21(18):4038-48. doi: 10.1093/hmg/dds228. Epub 2012 Jun 13.


Phosphatidylserine colocalizes with epichromatin in interphase nuclei and mitotic chromosomes.

Prudovsky I, Vary CP, Markaki Y, Olins AL, Olins DE.

Nucleus. 2012 Mar 1;3(2):200-10. doi: 10.4161/nucl.19662. Epub 2012 Mar 1.


Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.

Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C, Cremer T.

Cold Spring Harb Symp Quant Biol. 2010;75:475-92. doi: 10.1101/sqb.2010.75.042. Epub 2011 Apr 5.


Phosphorylation of histone H3 at Thr3 is part of a combinatorial pattern that marks and configures mitotic chromatin.

Markaki Y, Christogianni A, Politou AS, Georgatos SD.

J Cell Sci. 2009 Aug 15;122(Pt 16):2809-19. doi: 10.1242/jcs.043810. Epub 2009 Jul 21.


Chromatin remodeling during mitosis: a structure-based code?

Georgatos SD, Markaki Y, Christogianni A, Politou AS.

Front Biosci (Landmark Ed). 2009 Jan 1;14:2017-27. Review.


Mitotic phosphorylation of histone H3 at threonine 3.

Polioudaki H, Markaki Y, Kourmouli N, Dialynas G, Theodoropoulos PA, Singh PB, Georgatos SD.

FEBS Lett. 2004 Feb 27;560(1-3):39-44.

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