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Items: 21

1.

Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance.

Paës G, Navarro D, Benoit Y, Blanquet S, Chabbert B, Chaussepied B, Coutinho PM, Durand S, Grigoriev IV, Haon M, Heux L, Launay C, Margeot A, Nishiyama Y, Raouche S, Rosso MN, Bonnin E, Berrin JG.

Biotechnol Biofuels. 2019 Apr 1;12:76. doi: 10.1186/s13068-019-1417-8. eCollection 2019.

2.

AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes.

Filiatrault-Chastel C, Navarro D, Haon M, Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S, Margeot A, Berrin JG.

Biotechnol Biofuels. 2019 Mar 16;12:55. doi: 10.1186/s13068-019-1394-y. eCollection 2019.

3.

Correction to: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes.

Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F.

Biotechnol Biofuels. 2018 Jun 13;11:163. doi: 10.1186/s13068-018-1161-5. eCollection 2018.

4.

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.

Ivanova C, Ramoni J, Aouam T, Frischmann A, Seiboth B, Baker SE, Le Crom S, Lemoine S, Margeot A, Bidard F.

Biotechnol Biofuels. 2017 Sep 7;10:209. doi: 10.1186/s13068-017-0897-7. eCollection 2017.

5.

Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes.

Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F.

Biotechnol Biofuels. 2017 Jun 12;10:151. doi: 10.1186/s13068-017-0837-6. eCollection 2017. Erratum in: Biotechnol Biofuels. 2018 Jun 13;11:163.

6.

Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.

Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP.

BMC Genomics. 2015 Sep 22;16(1):725. doi: 10.1186/s12864-015-1917-2. No abstract available.

7.

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.

Lichius A, Bidard F, Buchholz F, Le Crom S, Martin J, Schackwitz W, Austerlitz T, Grigoriev IV, Baker SE, Margeot A, Seiboth B, Kubicek CP.

BMC Genomics. 2015 Apr 20;16:326. doi: 10.1186/s12864-015-1526-0. Erratum in: BMC Genomics. 2015;16(1):725.

8.

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei.

Ghassemi S, Lichius A, Bidard F, Lemoine S, Rossignol MN, Herold S, Seidl-Seiboth V, Seiboth B, Espeso EA, Margeot A, Kubicek CP.

Mol Microbiol. 2015 Apr;96(2):405-18. doi: 10.1111/mmi.12944. Epub 2015 Mar 4.

9.

Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain.

Poggi-Parodi D, Bidard F, Pirayre A, Portnoy T, Blugeon C, Seiboth B, Kubicek CP, Le Crom S, Margeot A.

Biotechnol Biofuels. 2014 Dec 12;7(1):173. doi: 10.1186/s13068-014-0173-z. eCollection 2014.

10.

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.

11.

The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation.

Portnoy T, Margeot A, Linke R, Atanasova L, Fekete E, Sándor E, Hartl L, Karaffa L, Druzhinina IS, Seiboth B, Le Crom S, Kubicek CP.

BMC Genomics. 2011 May 27;12:269. doi: 10.1186/1471-2164-12-269.

12.

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, Atanasova L, Cervantes-Badillo MG, Challacombe J, Chertkov O, McCluskey K, Coulpier F, Deshpande N, von Döhren H, Ebbole DJ, Esquivel-Naranjo EU, Fekete E, Flipphi M, Glaser F, Gómez-Rodríguez EY, Gruber S, Han C, Henrissat B, Hermosa R, Hernández-Oñate M, Karaffa L, Kosti I, Le Crom S, Lindquist E, Lucas S, Lübeck M, Lübeck PS, Margeot A, Metz B, Misra M, Nevalainen H, Omann M, Packer N, Perrone G, Uresti-Rivera EE, Salamov A, Schmoll M, Seiboth B, Shapiro H, Sukno S, Tamayo-Ramos JA, Tisch D, Wiest A, Wilkinson HH, Zhang M, Coutinho PM, Kenerley CM, Monte E, Baker SE, Grigoriev IV.

Genome Biol. 2011;12(4):R40. doi: 10.1186/gb-2011-12-4-r40. Epub 2011 Apr 18.

13.

Differential regulation of the cellulase transcription factors XYR1, ACE2, and ACE1 in Trichoderma reesei strains producing high and low levels of cellulase.

Portnoy T, Margeot A, Seidl-Seiboth V, Le Crom S, Ben Chaabane F, Linke R, Seiboth B, Kubicek CP.

Eukaryot Cell. 2011 Feb;10(2):262-71. doi: 10.1128/EC.00208-10. Epub 2010 Dec 17.

14.

Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments.

Jourdren L, Duclos A, Brion C, Portnoy T, Mathis H, Margeot A, Le Crom S.

Nucleic Acids Res. 2010 Jun;38(10):e117. doi: 10.1093/nar/gkq110. Epub 2010 Feb 21.

15.

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.

Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, Collett JR, Martin J, Druzhinina IS, Mathis H, Monot F, Seiboth B, Cherry B, Rey M, Berka R, Kubicek CP, Baker SE, Margeot A.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16151-6. doi: 10.1073/pnas.0905848106. Epub 2009 Sep 2.

16.

New improvements for lignocellulosic ethanol.

Margeot A, Hahn-Hagerdal B, Edlund M, Slade R, Monot F.

Curr Opin Biotechnol. 2009 Jun;20(3):372-80. doi: 10.1016/j.copbio.2009.05.009. Epub 2009 Jun 6. Review.

PMID:
19502048
17.

Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains.

Herpoël-Gimbert I, Margeot A, Dolla A, Jan G, Mollé D, Lignon S, Mathis H, Sigoillot JC, Monot F, Asther M.

Biotechnol Biofuels. 2008 Dec 23;1(1):18. doi: 10.1186/1754-6834-1-18.

18.

Why are many mRNAs translated to the vicinity of mitochondria: a role in protein complex assembly?

Margeot A, Garcia M, Wang W, Tetaud E, di Rago JP, Jacq C.

Gene. 2005 Jul 18;354:64-71.

PMID:
15979254
19.

The role of the 3' untranslated region in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells.

Sylvestre J, Margeot A, Jacq C, Dujardin G, Corral-Debrinski M.

Mol Biol Cell. 2003 Sep;14(9):3848-56. Epub 2003 Jun 13.

20.

In Saccharomyces cerevisiae, ATP2 mRNA sorting to the vicinity of mitochondria is essential for respiratory function.

Margeot A, Blugeon C, Sylvestre J, Vialette S, Jacq C, Corral-Debrinski M.

EMBO J. 2002 Dec 16;21(24):6893-904.

21.

Genome-wide analysis of mRNAs targeted to yeast mitochondria.

Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C.

EMBO Rep. 2002 Feb;3(2):159-64. Epub 2002 Jan 29.

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