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Effects of intraoperative leak testing on postoperative leak-related outcomes after primary bariatric surgery: an analysis of the MBSAQIP database.

Yolsuriyanwong K, Ingviya T, Kongkamol C, Marcotte E, Chand B.

Surg Obes Relat Dis. 2019 Sep;15(9):1530-1540. doi: 10.1016/j.soard.2019.06.008. Epub 2019 Jun 17.


Bringing Microscopy-By-Sequencing into View.

Boulgakov AA, Ellington AD, Marcotte EM.

Trends Biotechnol. 2019 Jul 6. pii: S0167-7799(19)30134-9. doi: 10.1016/j.tibtech.2019.06.001. [Epub ahead of print] Review.


Trends in International Incidence of Pediatric Cancers in Children Under 5 Years of Age: 1988-2012.

Hubbard AK, Spector LG, Fortuna G, Marcotte EL, Poynter JN.

JNCI Cancer Spectr. 2019 Mar;3(1):pkz007. doi: 10.1093/jncics/pkz007. Epub 2019 Apr 9.


Residential mobility in early childhood and the impact on misclassification in pesticide exposures.

Ling C, Heck JE, Cockburn M, Liew Z, Marcotte E, Ritz B.

Environ Res. 2019 Jun;173:212-220. doi: 10.1016/j.envres.2019.03.039. Epub 2019 Mar 19.


Sex ratio among childhood cancers by single year of age.

Williams LA, Richardson M, Marcotte EL, Poynter JN, Spector LG.

Pediatr Blood Cancer. 2019 Jun;66(6):e27620. doi: 10.1002/pbc.27620. Epub 2019 Feb 28.


Parental age and the risk of childhood acute myeloid leukemia: results from the Childhood Leukemia International Consortium.

Panagopoulou P, Skalkidou A, Marcotte E, Erdmann F, Ma X, Heck JE, Auvinen A, Mueller BA, Spector LG, Roman E, Metayer C, Magnani C, Pombo-de-Oliveira MS, Scheurer ME, Mora AM, Dockerty JD, Hansen J, Kang AY, Wang R, Doody DR, Kane E, Schüz J, Christodoulakis C, Ntzani E, Petridou ET; FRECCLE group; NARECHEM-ST group.

Cancer Epidemiol. 2019 Apr;59:158-165. doi: 10.1016/j.canep.2019.01.022. Epub 2019 Feb 15.


Is There Etiologic Heterogeneity between Subtypes of Childhood Acute Lymphoblastic Leukemia? A Review of Variation in Risk by Subtype.

Williams LA, Yang JJ, Hirsch BA, Marcotte EL, Spector LG.

Cancer Epidemiol Biomarkers Prev. 2019 May;28(5):846-856. doi: 10.1158/1055-9965.EPI-18-0801. Epub 2019 Feb 15. Review.


A liquid-like organelle at the root of motile ciliopathy.

Huizar RL, Lee C, Boulgakov AA, Horani A, Tu F, Marcotte EM, Brody SL, Wallingford JB.

Elife. 2018 Dec 18;7. pii: e38497. doi: 10.7554/eLife.38497.


Withdrawn as Duplicate: The many nuanced evolutionary consequences of duplicated genes.

Teufel AI, Johnson MM, Laurent JM, Kachroo AH, Marcotte EM, Wilke CO.

Mol Biol Evol. 2018 Dec 1;35(12):e1. doi: 10.1093/molbev/msy216. No abstract available.


The Many Nuanced Evolutionary Consequences of Duplicated Genes.

Teufel AI, Johnson MM, Laurent JM, Kachroo AH, Marcotte EM, Wilke CO.

Mol Biol Evol. 2019 Feb 1;36(2):304-314. doi: 10.1093/molbev/msy210.


HumanNet v2: human gene networks for disease research.

Hwang S, Kim CY, Yang S, Kim E, Hart T, Marcotte EM, Lee I.

Nucleic Acids Res. 2019 Jan 8;47(D1):D573-D580. doi: 10.1093/nar/gky1126.


Impact of vagus nerve integrity testing on surgical management in patients with previous operations with potential risk of vagal injury.

Yolsuriyanwong K, Marcotte E, Venu M, Chand B.

Surg Endosc. 2019 Aug;33(8):2620-2628. doi: 10.1007/s00464-018-6562-9. Epub 2018 Oct 25.


Highly parallel single-molecule identification of proteins in zeptomole-scale mixtures.

Swaminathan J, Boulgakov AA, Hernandez ET, Bardo AM, Bachman JL, Marotta J, Johnson AM, Anslyn EV, Marcotte EM.

Nat Biotechnol. 2018 Oct 22. doi: 10.1038/nbt.4278. [Epub ahead of print]


A highly parallel strategy for storage of digital information in living cells.

Akhmetov A, Ellington AD, Marcotte EM.

BMC Biotechnol. 2018 Oct 17;18(1):64. doi: 10.1186/s12896-018-0476-4.


Effectiveness, Compliance, and Acceptability of Preoperative Weight Loss with a Liquid Very Low-Calorie Diet Before Bariatric Surgery in Real Practice.

Yolsuriyanwong K, Thanavachirasin K, Sasso K, Zuro L, Bartfield J, Marcotte E, Chand B.

Obes Surg. 2019 Jan;29(1):54-60. doi: 10.1007/s11695-018-3444-0.


Photography Coupled with Self-Propagating Chemical Cascades: Differentiation and Quantitation of G- and V-Nerve Agent Mimics via Chromaticity.

Sun X, Boulgakov AA, Smith LN, Metola P, Marcotte EM, Anslyn EV.

ACS Cent Sci. 2018 Jul 25;4(7):854-861. doi: 10.1021/acscentsci.8b00193. Epub 2018 Jun 27.


Classification of Single Particles from Human Cell Extract Reveals Distinct Structures.

Verbeke EJ, Mallam AL, Drew K, Marcotte EM, Taylor DW.

Cell Rep. 2018 Jul 3;24(1):259-268.e3. doi: 10.1016/j.celrep.2018.06.022.


Single-step Precision Genome Editing in Yeast Using CRISPR-Cas9.

Akhmetov A, Laurent JM, Gollihar J, Gardner EC, Garge RK, Ellington AD, Kachroo AH, Marcotte EM.

Bio Protoc. 2018 Mar 20;8(6). pii: e2765. doi: 10.21769/BioProtoc.2765.


Cesarean Delivery and Risk of Infant Leukemia: A Report from the Children's Oncology Group.

Marcotte EL, Richardson MR, Roesler MA, Spector LG.

Cancer Epidemiol Biomarkers Prev. 2018 Apr;27(4):473-478. doi: 10.1158/1055-9965.EPI-17-0778. Epub 2018 Jan 22.


Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus.

Gibeaux R, Acker R, Kitaoka M, Georgiou G, van Kruijsbergen I, Ford B, Marcotte EM, Nomura DK, Kwon T, Veenstra GJC, Heald R.

Nature. 2018 Jan 18;553(7688):337-341. doi: 10.1038/nature25188. Epub 2018 Jan 10.


Protein localization screening in vivo reveals novel regulators of multiciliated cell development and function.

Tu F, Sedzinski J, Ma Y, Marcotte EM, Wallingford JB.

J Cell Sci. 2018 Jan 29;131(3). pii: jcs206565. doi: 10.1242/jcs.206565.


Identifying direct contacts between protein complex subunits from their conditional dependence in proteomics datasets.

Drew K, Müller CL, Bonneau R, Marcotte EM.

PLoS Comput Biol. 2017 Oct 12;13(10):e1005625. doi: 10.1371/journal.pcbi.1005625. eCollection 2017 Oct.


Solution-phase and solid-phase sequential, selective modification of side chains in KDYWEC and KDYWE as models for usage in single-molecule protein sequencing.

Hernandez ET, Swaminathan J, Marcotte EM, Anslyn EV.

New J Chem. 2017 Jan 21;41(2):462-469. doi: 10.1039/C6NJ02932A. Epub 2016 Nov 18.


Parental Age and Risk of Infant Leukaemia: A Pooled Analysis.

Marcotte EL, Druley TE, Johnson KJ, Richardson M, von Behren J, Mueller BA, Carozza S, McLaughlin C, Chow EJ, Reynolds P, Spector LG.

Paediatr Perinat Epidemiol. 2017 Nov;31(6):563-572. doi: 10.1111/ppe.12412. Epub 2017 Sep 22.


Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection.

Kuboniwa M, Houser JR, Hendrickson EL, Wang Q, Alghamdi SA, Sakanaka A, Miller DP, Hutcherson JA, Wang T, Beck DAC, Whiteley M, Amano A, Wang H, Marcotte EM, Hackett M, Lamont RJ.

Nat Microbiol. 2017 Nov;2(11):1493-1499. doi: 10.1038/s41564-017-0021-6. Epub 2017 Sep 18.


Systematic bacterialization of yeast genes identifies a near-universally swappable pathway.

Kachroo AH, Laurent JM, Akhmetov A, Szilagyi-Jones M, McWhite CD, Zhao A, Marcotte EM.

Elife. 2017 Jun 29;6. pii: e25093. doi: 10.7554/eLife.25093.


Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes.

Drew K, Lee C, Huizar RL, Tu F, Borgeson B, McWhite CD, Ma Y, Wallingford JB, Marcotte EM.

Mol Syst Biol. 2017 Jun 8;13(6):932. doi: 10.15252/msb.20167490.


Systems-wide Studies Uncover Commander, a Multiprotein Complex Essential to Human Development.

Mallam AL, Marcotte EM.

Cell Syst. 2017 May 24;4(5):483-494. doi: 10.1016/j.cels.2017.04.006. Review.


WheatNet: a Genome-Scale Functional Network for Hexaploid Bread Wheat, Triticum aestivum.

Lee T, Hwang S, Kim CY, Shim H, Kim H, Ronald PC, Marcotte EM, Lee I.

Mol Plant. 2017 Aug 7;10(8):1133-1136. doi: 10.1016/j.molp.2017.04.006. Epub 2017 Apr 24. No abstract available.


GWAB: a web server for the network-based boosting of human genome-wide association data.

Shim JE, Bang C, Yang S, Lee T, Hwang S, Kim CY, Singh-Blom UM, Marcotte EM, Lee I.

Nucleic Acids Res. 2017 Jul 3;45(W1):W154-W161. doi: 10.1093/nar/gkx284.


The E. coli molecular phenotype under different growth conditions.

Caglar MU, Houser JR, Barnhart CS, Boutz DR, Carroll SM, Dasgupta A, Lenoir WF, Smith BL, Sridhara V, Sydykova DK, Vander Wood D, Marx CJ, Marcotte EM, Barrick JE, Wilke CO.

Sci Rep. 2017 Apr 18;7:45303. doi: 10.1038/srep45303.


Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions.

Brown CW, Sridhara V, Boutz DR, Person MD, Marcotte EM, Barrick JE, Wilke CO.

BMC Genomics. 2017 Apr 17;18(1):301. doi: 10.1186/s12864-017-3676-8.


Variants in BAK1, SPRY4, and GAB2 are associated with pediatric germ cell tumors: A report from the children's oncology group.

Marcotte EL, Pankratz N, Amatruda JF, Frazier AL, Krailo M, Davies S, Starr JR, Lau CC, Roesler M, Langer E, Hallstrom C, Hooten AJ, Poynter JN.

Genes Chromosomes Cancer. 2017 Jul;56(7):548-558. doi: 10.1002/gcc.22457. Epub 2017 Apr 4.


Comprehensive de Novo Peptide Sequencing from MS/MS Pairs Generated through Complementary Collision Induced Dissociation and 351 nm Ultraviolet Photodissociation.

Horton AP, Robotham SA, Cannon JR, Holden DD, Marcotte EM, Brodbelt JS.

Anal Chem. 2017 Mar 21;89(6):3747-3753. doi: 10.1021/acs.analchem.7b00130. Epub 2017 Mar 8.


Endoscopic techniques in the management of esophagojejunal dehiscence after total gastrectomy.

Thanavachirasin K, Marcotte E, Prathanvanich P, Chand B.

VideoGIE. 2017 Feb 4;2(5):108-109. doi: 10.1016/j.vgie.2017.01.019. eCollection 2017 May. No abstract available.


Murine Cytomegalovirus Deubiquitinase Regulates Viral Chemokine Levels To Control Inflammation and Pathogenesis.

Hilterbrand AT, Boutz DR, Marcotte EM, Upton JW.

MBio. 2017 Jan 17;8(1). pii: e01864-16. doi: 10.1128/mBio.01864-16.


Predictability of Genetic Interactions from Functional Gene Modules.

Young JH, Marcotte EM.

G3 (Bethesda). 2017 Feb 9;7(2):617-624. doi: 10.1534/g3.116.035915.


Temporal stability and molecular persistence of the bone marrow plasma cell antibody repertoire.

Wu GC, Cheung NV, Georgiou G, Marcotte EM, Ippolito GC.

Nat Commun. 2016 Dec 21;7:13838. doi: 10.1038/ncomms13838.


Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination.

Lee J, Boutz DR, Chromikova V, Joyce MG, Vollmers C, Leung K, Horton AP, DeKosky BJ, Lee CH, Lavinder JJ, Murrin EM, Chrysostomou C, Hoi KH, Tsybovsky Y, Thomas PV, Druz A, Zhang B, Zhang Y, Wang L, Kong WP, Park D, Popova LI, Dekker CL, Davis MM, Carter CE, Ross TM, Ellington AD, Wilson PC, Marcotte EM, Mascola JR, Ippolito GC, Krammer F, Quake SR, Kwong PD, Georgiou G.

Nat Med. 2016 Dec;22(12):1456-1464. doi: 10.1038/nm.4224. Epub 2016 Nov 7.


Genome evolution in the allotetraploid frog Xenopus laevis.

Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.

Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840.


Management and Prevention of Surgical and Nutritional Complications After Bariatric Surgery.

Marcotte E, Chand B.

Surg Clin North Am. 2016 Aug;96(4):843-56. doi: 10.1016/j.suc.2016.03.006. Review.


Corrigendum: The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery.

Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ; University of Washington Center for Mendelian Genomics, Duffourd Y, Faivre L, Rivière JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB.

Nat Genet. 2016 Jul 27;48(8):970. doi: 10.1038/ng0816-970b. No abstract available.


Towards Consensus Gene Ages.

Liebeskind BJ, McWhite CD, Marcotte EM.

Genome Biol Evol. 2016 Jun 27;8(6):1812-23. doi: 10.1093/gbe/evw113.


The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery.

Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ; University of Washington Center for Mendelian Genomics, Duffourd Y, Faivre L, Rivière JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB.

Nat Genet. 2016 Jun;48(6):648-56. doi: 10.1038/ng.3558. Epub 2016 May 9. Erratum in: Nat Genet. 2016 Jul 27;48(8):970.


Caesarean delivery and risk of childhood leukaemia: a pooled analysis from the Childhood Leukemia International Consortium (CLIC).

Marcotte EL, Thomopoulos TP, Infante-Rivard C, Clavel J, Petridou ET, Schüz J, Ezzat S, Dockerty JD, Metayer C, Magnani C, Scheurer ME, Mueller BA, Mora AM, Wesseling C, Skalkidou A, Rashed WM, Francis SS, Ajrouche R, Erdmann F, Orsi L, Spector LG.

Lancet Haematol. 2016 Apr;3(4):e176-85. doi: 10.1016/S2352-3026(16)00002-8. Epub 2016 Feb 27. Erratum in: Lancet Haematol. 2016 Apr;3(4):e162.


Sperm is epigenetically programmed to regulate gene transcription in embryos.

Teperek M, Simeone A, Gaggioli V, Miyamoto K, Allen GE, Erkek S, Kwon T, Marcotte EM, Zegerman P, Bradshaw CR, Peters AH, Gurdon JB, Jullien J.

Genome Res. 2016 Aug;26(8):1034-46. doi: 10.1101/gr.201541.115. Epub 2016 Mar 31.


UVnovo: A de Novo Sequencing Algorithm Using Single Series of Fragment Ions via Chromophore Tagging and 351 nm Ultraviolet Photodissociation Mass Spectrometry.

Robotham SA, Horton AP, Cannon JR, Cotham VC, Marcotte EM, Brodbelt JS.

Anal Chem. 2016 Apr 5;88(7):3990-7. doi: 10.1021/acs.analchem.6b00261. Epub 2016 Mar 14.


Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes.

Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A.

Data Brief. 2015 Dec 12;6:715-21. doi: 10.1016/j.dib.2015.11.062. eCollection 2016 Mar.


Computational discovery of pathway-level genetic vulnerabilities in non-small-cell lung cancer.

Young JH, Peyton M, Seok Kim H, McMillan E, Minna JD, White MA, Marcotte EM.

Bioinformatics. 2016 May 1;32(9):1373-9. doi: 10.1093/bioinformatics/btw010. Epub 2016 Jan 10.


Long-term neural and physiological phenotyping of a single human.

Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, Hunicke-Smith S, Simpson ZB, Caven T, Sochat V, Shine JM, Gordon E, Snyder AZ, Adeyemo B, Petersen SE, Glahn DC, Reese Mckay D, Curran JE, Göring HH, Carless MA, Blangero J, Dougherty R, Leemans A, Handwerker DA, Frick L, Marcotte EM, Mumford JA.

Nat Commun. 2015 Dec 9;6:8885. doi: 10.1038/ncomms9885.

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