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Items: 23

1.

Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota.

Foutel-Rodier T, Thierry A, Koszul R, Marbouty M.

Methods Enzymol. 2018;612:183-195. doi: 10.1016/bs.mie.2018.08.001. Epub 2018 Sep 18.

PMID:
30502941
2.

Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin.

Moreau P, Cournac A, Palumbo GA, Marbouty M, Mortaza S, Thierry A, Cairo S, Lavigne M, Koszul R, Neuveut C.

Nat Commun. 2018 Oct 15;9(1):4268. doi: 10.1038/s41467-018-06739-4.

3.

Correction to: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes.

Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F.

Biotechnol Biofuels. 2018 Jun 13;11:163. doi: 10.1186/s13068-018-1161-5. eCollection 2018.

4.

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.

Lioy VS, Cournac A, Marbouty M, Duigou S, Mozziconacci J, Espéli O, Boccard F, Koszul R.

Cell. 2018 Feb 8;172(4):771-783.e18. doi: 10.1016/j.cell.2017.12.027. Epub 2018 Jan 18.

5.

Generation and Analysis of Chromosomal Contact Maps of Bacteria.

Marbouty M, Koszul R.

Methods Mol Biol. 2017;1624:75-84. doi: 10.1007/978-1-4939-7098-8_7.

PMID:
28842877
6.

Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes.

Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F.

Biotechnol Biofuels. 2017 Jun 12;10:151. doi: 10.1186/s13068-017-0837-6. eCollection 2017. Erratum in: Biotechnol Biofuels. 2018 Jun 13;11:163.

7.

Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay.

Marbouty M, Baudry L, Cournac A, Koszul R.

Sci Adv. 2017 Feb 17;3(2):e1602105. doi: 10.1126/sciadv.1602105. eCollection 2017 Feb.

8.

A checkpoint control orchestrates the replication of the two chromosomes of Vibrio cholerae.

Val ME, Marbouty M, de Lemos Martins F, Kennedy SP, Kemble H, Bland MJ, Possoz C, Koszul R, Skovgaard O, Mazel D.

Sci Adv. 2016 Apr 22;2(4):e1501914. doi: 10.1126/sciadv.1501914. eCollection 2016 Apr.

9.

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast.

Spichal M, Brion A, Herbert S, Cournac A, Marbouty M, Zimmer C, Koszul R, Fabre E.

J Cell Sci. 2016 Feb 15;129(4):681-92. doi: 10.1242/jcs.175745. Epub 2016 Jan 13.

10.

Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data.

Marbouty M, Koszul R.

Trends Genet. 2015 Dec;31(12):673-682. doi: 10.1016/j.tig.2015.10.003. Epub 2015 Nov 19. Review.

11.

Generation and Analysis of Chromosomal Contact Maps of Yeast Species.

Cournac A, Marbouty M, Mozziconacci J, Koszul R.

Methods Mol Biol. 2016;1361:227-45. doi: 10.1007/978-1-4939-3079-1_13.

12.

Spatial reorganization of telomeres in long-lived quiescent cells.

Guidi M, Ruault M, Marbouty M, Loïodice I, Cournac A, Billaudeau C, Hocher A, Mozziconacci J, Koszul R, Taddei A.

Genome Biol. 2015 Sep 23;16:206. doi: 10.1186/s13059-015-0766-2.

13.

Genome-wide replication landscape of Candida glabrata.

Descorps-Declère S, Saguez C, Cournac A, Marbouty M, Rolland T, Ma L, Bouchier C, Moszer I, Dujon B, Koszul R, Richard GF.

BMC Biol. 2015 Sep 2;13:69. doi: 10.1186/s12915-015-0177-6.

14.

Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-resolution Imaging.

Marbouty M, Le Gall A, Cattoni DI, Cournac A, Koh A, Fiche JB, Mozziconacci J, Murray H, Koszul R, Nollmann M.

Mol Cell. 2015 Aug 20;59(4):588-602. doi: 10.1016/j.molcel.2015.07.020.

15.

High-quality genome (re)assembly using chromosomal contact data.

Marie-Nelly H, Marbouty M, Cournac A, Flot JF, Liti G, Parodi DP, Syan S, Guillén N, Margeot A, Zimmer C, Koszul R.

Nat Commun. 2014 Dec 17;5:5695. doi: 10.1038/ncomms6695.

16.

Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms.

Marbouty M, Cournac A, Flot JF, Marie-Nelly H, Mozziconacci J, Koszul R.

Elife. 2014 Dec 17;3:e03318. doi: 10.7554/eLife.03318.

17.

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Marie-Nelly H, Marbouty M, Cournac A, Liti G, Fischer G, Zimmer C, Koszul R.

Bioinformatics. 2014 Aug 1;30(15):2105-13. doi: 10.1093/bioinformatics/btu162. Epub 2014 Apr 7.

18.

Purification of G1 daughter cells from different Saccharomycetes species through an optimized centrifugal elutriation procedure.

Marbouty M, Ermont C, Dujon B, Richard GF, Koszul R.

Yeast. 2014 May;31(5):159-66. doi: 10.1002/yea.3005. Epub 2014 Mar 26.

19.

Normalization of a chromosomal contact map.

Cournac A, Marie-Nelly H, Marbouty M, Koszul R, Mozziconacci J.

BMC Genomics. 2012 Aug 30;13:436. doi: 10.1186/1471-2164-13-436.

20.

ZipN, an FtsA-like orchestrator of divisome assembly in the model cyanobacterium Synechocystis PCC6803.

Marbouty M, Saguez C, Cassier-Chauvat C, Chauvat F.

Mol Microbiol. 2009 Oct;74(2):409-20. doi: 10.1111/j.1365-2958.2009.06873.x. Epub 2009 Sep 8.

21.

The cyanobacterial cell division factor Ftn6 contains an N-terminal DnaD-like domain.

Marbouty M, Saguez C, Chauvat F.

BMC Struct Biol. 2009 Aug 21;9:54. doi: 10.1186/1472-6807-9-54.

22.

Characterization of the FtsZ-interacting septal proteins SepF and Ftn6 in the spherical-celled cyanobacterium Synechocystis strain PCC 6803.

Marbouty M, Saguez C, Cassier-Chauvat C, Chauvat F.

J Bacteriol. 2009 Oct;191(19):6178-85. doi: 10.1128/JB.00723-09. Epub 2009 Jul 31.

23.

Characterization of the Synechocystis strain PCC 6803 penicillin-binding proteins and cytokinetic proteins FtsQ and FtsW and their network of interactions with ZipN.

Marbouty M, Mazouni K, Saguez C, Cassier-Chauvat C, Chauvat F.

J Bacteriol. 2009 Aug;191(16):5123-33. doi: 10.1128/JB.00620-09. Epub 2009 Jun 19.

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