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Items: 22

1.

Architecting Discovery: A Model for How Engineers Can Help Invent Tools for Neuroscience.

Boyden ES, Marblestone AH.

Neuron. 2019 May 8;102(3):523-525. doi: 10.1016/j.neuron.2019.03.023.

PMID:
31071286
2.

A theoretical analysis of single molecule protein sequencing via weak binding spectra.

Rodriques SG, Marblestone AH, Boyden ES.

PLoS One. 2019 Mar 28;14(3):e0212868. doi: 10.1371/journal.pone.0212868. eCollection 2019.

3.

3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds.

Oran D, Rodriques SG, Gao R, Asano S, Skylar-Scott MA, Chen F, Tillberg PW, Marblestone AH, Boyden ES.

Science. 2018 Dec 14;362(6420):1281-1285. doi: 10.1126/science.aau5119.

4.

High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.

de Paz AM, Cybulski TR, Marblestone AH, Zamft BM, Church GM, Boyden ES, Kording KP, Tyo KEJ.

Nucleic Acids Res. 2018 Jul 27;46(13):e78. doi: 10.1093/nar/gky296.

5.

Understand the cogs to understand cognition.

Marblestone AH, Wayne G, Kording KP.

Behav Brain Sci. 2017 Jan;40:e272. doi: 10.1017/S0140525X17000218.

PMID:
29342693
6.

Four ethical priorities for neurotechnologies and AI.

Yuste R, Goering S, Arcas BAY, Bi G, Carmena JM, Carter A, Fins JJ, Friesen P, Gallant J, Huggins JE, Illes J, Kellmeyer P, Klein E, Marblestone A, Mitchell C, Parens E, Pham M, Rubel A, Sadato N, Sullivan LS, Teicher M, Wasserman D, Wexler A, Whittaker M, Wolpaw J.

Nature. 2017 Nov 8;551(7679):159-163. doi: 10.1038/551159a. No abstract available.

PMID:
29120438
7.

Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration.

Yoon YG, Dai P, Wohlwend J, Chang JB, Marblestone AH, Boyden ES.

Front Comput Neurosci. 2017 Oct 24;11:97. doi: 10.3389/fncom.2017.00097. eCollection 2017.

8.

DNA binding strength increases the processivity and activity of a Y-Family DNA polymerase.

Wu J, de Paz A, Zamft BM, Marblestone AH, Boyden ES, Kording KP, Tyo KEJ.

Sci Rep. 2017 Jul 6;7(1):4756. doi: 10.1038/s41598-017-02578-3.

9.

Toward an Integration of Deep Learning and Neuroscience.

Marblestone AH, Wayne G, Kording KP.

Front Comput Neurosci. 2016 Sep 14;10:94. doi: 10.3389/fncom.2016.00094. eCollection 2016.

10.

Nanoscale imaging of RNA with expansion microscopy.

Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A, Boyden ES.

Nat Methods. 2016 Aug;13(8):679-84. doi: 10.1038/nmeth.3899. Epub 2016 Jul 4.

11.

Multiplexed neural recording along a single optical fiber via optical reflectometry.

Rodriques SG, Marblestone AH, Scholvin J, Dapello J, Sarkar D, Mankin M, Gao R, Wood L, Boyden ES.

J Biomed Opt. 2016 May 1;21(5):57003. doi: 10.1117/1.JBO.21.5.057003.

12.

Spatial information in large-scale neural recordings.

Cybulski TR, Glaser JI, Marblestone AH, Zamft BM, Boyden ES, Church GM, Kording KP.

Front Comput Neurosci. 2015 Jan 21;8:172. doi: 10.3389/fncom.2014.00172. eCollection 2014.

13.

Neuroscience. The atoms of neural computation.

Marcus G, Marblestone A, Dean T.

Science. 2014 Oct 31;346(6209):551-2. doi: 10.1126/science.1261661. No abstract available.

PMID:
25359953
14.

Designing tools for assumption-proof brain mapping.

Marblestone AH, Boyden ES.

Neuron. 2014 Sep 17;83(6):1239-41. doi: 10.1016/j.neuron.2014.09.004. Review.

15.

Highly multiplexed subcellular RNA sequencing in situ.

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, Mali P, Rios X, Aach J, Church GM.

Science. 2014 Mar 21;343(6177):1360-3. doi: 10.1126/science.1250212. Epub 2014 Feb 27.

16.

Physical principles for scalable neural recording.

Marblestone AH, Zamft BM, Maguire YG, Shapiro MG, Cybulski TR, Glaser JI, Amodei D, Stranges PB, Kalhor R, Dalrymple DA, Seo D, Alon E, Maharbiz MM, Carmena JM, Rabaey JM, Boyden ES, Church GM, Kording KP.

Front Comput Neurosci. 2013 Oct 21;7:137. doi: 10.3389/fncom.2013.00137. eCollection 2013.

17.

Molecular threading: mechanical extraction, stretching and placement of DNA molecules from a liquid-air interface.

Payne AC, Andregg M, Kemmish K, Hamalainen M, Bowell C, Bleloch A, Klejwa N, Lehrach W, Schatz K, Stark H, Marblestone A, Church G, Own CS, Andregg W.

PLoS One. 2013 Jul 31;8(7):e69058. doi: 10.1371/journal.pone.0069058. Print 2013.

18.

Statistical analysis of molecular signal recording.

Glaser JI, Zamft BM, Marblestone AH, Moffitt JR, Tyo K, Boyden ES, Church G, Kording KP.

PLoS Comput Biol. 2013;9(7):e1003145. doi: 10.1371/journal.pcbi.1003145. Epub 2013 Jul 18.

19.

Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing.

Zamft BM, Marblestone AH, Kording K, Schmidt D, Martin-Alarcon D, Tyo K, Boyden ES, Church G.

PLoS One. 2012;7(8):e43876. doi: 10.1371/journal.pone.0043876. Epub 2012 Aug 22.

20.

Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis.

Wang HH, Huang PY, Xu G, Haas W, Marblestone A, Li J, Gygi SP, Forster AC, Jewett MC, Church GM.

ACS Synth Biol. 2012 Feb 17;1(2):43-52.

21.

Gene Assembly from Chip-Synthesized Oligonucleotides.

Eroshenko N, Kosuri S, Marblestone AH, Conway N, Church GM.

Curr Protoc Chem Biol. 2012 Mar 1;2012. pii: ch110190.

22.

Rapid prototyping of 3D DNA-origami shapes with caDNAno.

Douglas SM, Marblestone AH, Teerapittayanon S, Vazquez A, Church GM, Shih WM.

Nucleic Acids Res. 2009 Aug;37(15):5001-6. doi: 10.1093/nar/gkp436. Epub 2009 Jun 16.

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