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Items: 1 to 50 of 85

1.

Structure of human Vitronectin C-terminal domain and interaction with Yersinia pestis outer membrane protein Ail.

Shin K, Lechtenberg BC, Fujimoto LM, Yao Y, Bartra SS, Plano GV, Marassi FM.

Sci Adv. 2019 Sep 11;5(9):eaax5068. doi: 10.1126/sciadv.aax5068. eCollection 2019 Sep.

2.

Reconstitution and Characterization of BCL-2 Family Proteins in Lipid Bilayer Nanodiscs.

Yao Y, Marassi FM.

Methods Mol Biol. 2019;1877:233-246. doi: 10.1007/978-1-4939-8861-7_16.

3.

Lipoprotein Particle Formation by Proapoptotic tBid.

Ekanayake V, Nisan D, Ryzhov P, Yao Y, Marassi FM.

Biophys J. 2018 Aug 7;115(3):533-542. doi: 10.1016/j.bpj.2018.06.021. Epub 2018 Jun 26.

4.

Regulation of apoptosis by an intrinsically disordered region of Bcl-xL.

Follis AV, Llambi F, Kalkavan H, Yao Y, Phillips AH, Park CG, Marassi FM, Green DR, Kriwacki RW.

Nat Chem Biol. 2018 May;14(5):458-465. doi: 10.1038/s41589-018-0011-x. Epub 2018 Mar 5.

5.

Structure of monomeric Interleukin-8 and its interactions with the N-terminal Binding Site-I of CXCR1 by solution NMR spectroscopy.

Berkamp S, Park SH, De Angelis AA, Marassi FM, Opella SJ.

J Biomol NMR. 2017 Nov;69(3):111-121. doi: 10.1007/s10858-017-0128-3. Epub 2017 Nov 15.

6.

Structural Insights into the Yersinia pestis Outer Membrane Protein Ail in Lipid Bilayers.

Dutta SK, Yao Y, Marassi FM.

J Phys Chem B. 2017 Aug 17;121(32):7561-7570. doi: 10.1021/acs.jpcb.7b03941. Epub 2017 Aug 4.

7.

Applications of NMR to membrane proteins.

Opella SJ, Marassi FM.

Arch Biochem Biophys. 2017 Aug 15;628:92-101. doi: 10.1016/j.abb.2017.05.011. Epub 2017 May 18. Review.

8.

High resolution solid-state NMR spectroscopy of the Yersinia pestis outer membrane protein Ail in lipid membranes.

Yao Y, Dutta SK, Park SH, Rai R, Fujimoto LM, Bobkov AA, Opella SJ, Marassi FM.

J Biomol NMR. 2017 Mar;67(3):179-190. doi: 10.1007/s10858-017-0094-9. Epub 2017 Feb 26.

9.

High quality NMR structures: a new force field with implicit water and membrane solvation for Xplor-NIH.

Tian Y, Schwieters CD, Opella SJ, Marassi FM.

J Biomol NMR. 2017 Jan;67(1):35-49. doi: 10.1007/s10858-016-0082-5. Epub 2016 Dec 29.

10.

Orphan Nuclear Receptor NR4A1 Binds a Novel Protein Interaction Site on Anti-apoptotic B Cell Lymphoma Gene 2 Family Proteins.

Godoi PH, Wilkie-Grantham RP, Hishiki A, Sano R, Matsuzawa Y, Yanagi H, Munte CE, Chen Y, Yao Y, Marassi FM, Kalbitzer HR, Matsuzawa S, Reed JC.

J Biol Chem. 2016 Jul 1;291(27):14072-84. doi: 10.1074/jbc.M116.715235. Epub 2016 Apr 19.

11.

Characterization of the membrane-inserted C-terminus of cytoprotective BCL-XL.

Yao Y, Nisan D, Fujimoto LM, Antignani A, Barnes A, Tjandra N, Youle RJ, Marassi FM.

Protein Expr Purif. 2016 Jun;122:56-63. doi: 10.1016/j.pep.2016.02.010. Epub 2016 Feb 23.

12.

Yersinia pestis uses the Ail outer membrane protein to recruit vitronectin.

Bartra SS, Ding Y, Miya Fujimoto L, Ring JG, Jain V, Ram S, Marassi FM, Plano GV.

Microbiology. 2015 Nov;161(11):2174-2183. doi: 10.1099/mic.0.000179. Epub 2015 Sep 15.

13.

A Practical Implicit Membrane Potential for NMR Structure Calculations of Membrane Proteins.

Tian Y, Schwieters CD, Opella SJ, Marassi FM.

Biophys J. 2015 Aug 4;109(3):574-85. doi: 10.1016/j.bpj.2015.06.047.

14.

Backbone structure of Yersinia pestis Ail determined in micelles by NMR-restrained simulated annealing with implicit membrane solvation.

Marassi FM, Ding Y, Schwieters CD, Tian Y, Yao Y.

J Biomol NMR. 2015 Sep;63(1):59-65. doi: 10.1007/s10858-015-9963-2. Epub 2015 Jul 5.

15.

Solid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit Membranes.

Cheng X, Jo S, Qi Y, Marassi FM, Im W.

Biophys J. 2015 Apr 21;108(8):1954-62. doi: 10.1016/j.bpj.2015.03.012.

16.

Conformation of BCL-XL upon Membrane Integration.

Yao Y, Fujimoto LM, Hirshman N, Bobkov AA, Antignani A, Youle RJ, Marassi FM.

J Mol Biol. 2015 Jul 3;427(13):2262-70. doi: 10.1016/j.jmb.2015.02.019. Epub 2015 Feb 27.

17.

Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

Ding Y, Fujimoto LM, Yao Y, Marassi FM.

J Biomol NMR. 2015 Apr;61(3-4):275-86. doi: 10.1007/s10858-014-9893-4. Epub 2015 Jan 13.

18.

Influence of the lipid membrane environment on structure and activity of the outer membrane protein Ail from Yersinia pestis.

Ding Y, Fujimoto LM, Yao Y, Plano GV, Marassi FM.

Biochim Biophys Acta. 2015 Feb;1848(2):712-20. doi: 10.1016/j.bbamem.2014.11.021. Epub 2014 Nov 27.

19.

Structure of the membrane protein MerF, a bacterial mercury transporter, improved by the inclusion of chemical shift anisotropy constraints.

Tian Y, Lu GJ, Marassi FM, Opella SJ.

J Biomol NMR. 2014 Sep;60(1):67-71. doi: 10.1007/s10858-014-9852-0. Epub 2014 Aug 8. No abstract available.

20.

Structure of the Na,K-ATPase regulatory protein FXYD2b in micelles: implications for membrane-water interfacial arginines.

Gong XM, Ding Y, Yu J, Yao Y, Marassi FM.

Biochim Biophys Acta. 2015 Jan;1848(1 Pt B):299-306. doi: 10.1016/j.bbamem.2014.04.021. Epub 2014 May 2.

21.

A practical implicit solvent potential for NMR structure calculation.

Tian Y, Schwieters CD, Opella SJ, Marassi FM.

J Magn Reson. 2014 Jun;243:54-64. doi: 10.1016/j.jmr.2014.03.011. Epub 2014 Apr 2.

22.

The rheostat in the membrane: BCL-2 family proteins and apoptosis.

Volkmann N, Marassi FM, Newmeyer DD, Hanein D.

Cell Death Differ. 2014 Feb;21(2):206-15. doi: 10.1038/cdd.2013.153. Epub 2013 Oct 25. Review.

23.

Membrane protein structure determination in membrana.

Ding Y, Yao Y, Marassi FM.

Acc Chem Res. 2013 Sep 17;46(9):2182-90. doi: 10.1021/ar400041a. Epub 2013 Jun 24.

24.

Membrane protein structure determination: back to the membrane.

Yao Y, Ding Y, Tian Y, Opella SJ, Marassi FM.

Methods Mol Biol. 2013;1063:145-58. doi: 10.1007/978-1-62703-583-5_8.

25.

NMR-based simulation studies of Pf1 coat protein in explicit membranes.

Cheng X, Jo S, Marassi FM, Im W.

Biophys J. 2013 Aug 6;105(3):691-8. doi: 10.1016/j.bpj.2013.06.040.

26.

The structure of the mercury transporter MerF in phospholipid bilayers: a large conformational rearrangement results from N-terminal truncation.

Lu GJ, Tian Y, Vora N, Marassi FM, Opella SJ.

J Am Chem Soc. 2013 Jun 26;135(25):9299-302. doi: 10.1021/ja4042115. Epub 2013 Jun 17.

27.

The discreet charm of the curve.

Marassi FM.

Biophys J. 2013 Mar 19;104(6):1215-6. doi: 10.1016/j.bpj.2013.01.046. Epub 2013 Mar 19. No abstract available.

28.

Structure of the chemokine receptor CXCR1 in phospholipid bilayers.

Park SH, Das BB, Casagrande F, Tian Y, Nothnagel HJ, Chu M, Kiefer H, Maier K, De Angelis AA, Marassi FM, Opella SJ.

Nature. 2012 Nov 29;491(7426):779-83. doi: 10.1038/nature11580. Epub 2012 Oct 21.

29.

Improved chemical shift prediction by Rosetta conformational sampling.

Tian Y, Opella SJ, Marassi FM.

J Biomol NMR. 2012 Nov;54(3):237-43. doi: 10.1007/s10858-012-9677-7. Epub 2012 Sep 25.

30.

Structure determination of a membrane protein in proteoliposomes.

Das BB, Nothnagel HJ, Lu GJ, Son WS, Tian Y, Marassi FM, Opella SJ.

J Am Chem Soc. 2012 Feb 1;134(4):2047-56. doi: 10.1021/ja209464f. Epub 2012 Jan 23.

31.

Molecular structure and peptidoglycan recognition of Mycobacterium tuberculosis ArfA (Rv0899).

Yao Y, Barghava N, Kim J, Niederweis M, Marassi FM.

J Mol Biol. 2012 Feb 17;416(2):208-20. doi: 10.1016/j.jmb.2011.12.030. Epub 2011 Dec 21.

32.

AssignFit: a program for simultaneous assignment and structure refinement from solid-state NMR spectra.

Tian Y, Schwieters CD, Opella SJ, Marassi FM.

J Magn Reson. 2012 Jan;214(1):42-50. doi: 10.1016/j.jmr.2011.10.002. Epub 2011 Oct 8.

33.

Structure determination of membrane proteins in five easy pieces.

Marassi FM, Das BB, Lu GJ, Nothnagel HJ, Park SH, Son WS, Tian Y, Opella SJ.

Methods. 2011 Dec;55(4):363-9. doi: 10.1016/j.ymeth.2011.09.009. Epub 2011 Sep 20. Review.

34.

Mycobacterium tuberculosis Rv0899 defines a family of membrane proteins widespread in nitrogen-fixing bacteria.

Marassi FM.

Proteins. 2011 Oct;79(10):2946-55. doi: 10.1002/prot.23151. Epub 2011 Aug 26.

35.

FXYD proteins reverse inhibition of the Na+-K+ pump mediated by glutathionylation of its beta1 subunit.

Bibert S, Liu CC, Figtree GA, Garcia A, Hamilton EJ, Marassi FM, Sweadner KJ, Cornelius F, Geering K, Rasmussen HH.

J Biol Chem. 2011 May 27;286(21):18562-72. doi: 10.1074/jbc.M110.184101. Epub 2011 Mar 30.

36.

Expression, refolding, and initial structural characterization of the Y. pestis Ail outer membrane protein in lipids.

Plesniak LA, Mahalakshmi R, Rypien C, Yang Y, Racic J, Marassi FM.

Biochim Biophys Acta. 2011 Jan;1808(1):482-9. doi: 10.1016/j.bbamem.2010.09.017. Epub 2010 Sep 29.

37.

Structure and dynamics of the membrane-bound form of Pf1 coat protein: implications of structural rearrangement for virus assembly.

Park SH, Marassi FM, Black D, Opella SJ.

Biophys J. 2010 Sep 8;99(5):1465-74. doi: 10.1016/j.bpj.2010.06.009.

38.

Mycobacterium tuberculosis Rv0899 adopts a mixed alpha/beta-structure and does not form a transmembrane beta-barrel.

Teriete P, Yao Y, Kolodzik A, Yu J, Song H, Niederweis M, Marassi FM.

Biochemistry. 2010 Apr 6;49(13):2768-77. doi: 10.1021/bi100158s.

39.

BAX and BAK caught in the act.

Yao Y, Marassi FM.

Mol Cell. 2009 Nov 13;36(3):353-4. doi: 10.1016/j.molcel.2009.10.023.

40.

Effects of PKA phosphorylation on the conformation of the Na,K-ATPase regulatory protein FXYD1.

Teriete P, Thai K, Choi J, Marassi FM.

Biochim Biophys Acta. 2009 Nov;1788(11):2462-70. doi: 10.1016/j.bbamem.2009.09.001. Epub 2009 Sep 15.

41.

Mapping the interaction of pro-apoptotic tBID with pro-survival BCL-XL.

Yao Y, Bobkov AA, Plesniak LA, Marassi FM.

Biochemistry. 2009 Sep 15;48(36):8704-11. doi: 10.1021/bi901171n.

42.

Bicelles: A natural 'molecular goniometer' for structural, dynamical and topological studies of molecules in membranes.

Diller A, Loudet C, Aussenac F, Raffard G, Fournier S, Laguerre M, Grélard A, Opella SJ, Marassi FM, Dufourc EJ.

Biochimie. 2009 Jun;91(6):744-51. doi: 10.1016/j.biochi.2009.02.003. Epub 2009 Feb 25. Review.

43.
44.

Solid-state NMR spectroscopy of a membrane protein in biphenyl phospholipid bicelles with the bilayer normal parallel to the magnetic field.

Park SH, Loudet C, Marassi FM, Dufourc EJ, Opella SJ.

J Magn Reson. 2008 Jul;193(1):133-8. doi: 10.1016/j.jmr.2008.04.033. Epub 2008 Apr 29.

45.

Competitive interactions of collagen and a jararhagin-derived disintegrin peptide with the integrin alpha2-I domain.

Lambert LJ, Bobkov AA, Smith JW, Marassi FM.

J Biol Chem. 2008 Jun 13;283(24):16665-72. doi: 10.1074/jbc.M710483200. Epub 2008 Apr 16.

46.

Membrane orientation of the Na,K-ATPase regulatory membrane protein CHIF determined by solid-state NMR.

Franzin CM, Teriete P, Marassi FM.

Magn Reson Chem. 2007 Dec;45 Suppl 1:S192-7.

47.

Structures of the FXYD regulatory proteins in lipid micelles and membranes.

Franzin CM, Gong XM, Teriete P, Marassi FM.

J Bioenerg Biomembr. 2007 Dec;39(5-6):379-83. Review.

48.

Nuclear magnetic resonance structural studies of membrane proteins in micelles and bilayers.

Gong XM, Franzin CM, Thai K, Yu J, Marassi FM.

Methods Mol Biol. 2007;400:515-29. Review.

49.

Mapping the specific cytoprotective interaction of humanin with the pro-apoptotic protein bid.

Choi J, Zhai D, Zhou X, Satterthwait A, Reed JC, Marassi FM.

Chem Biol Drug Des. 2007 Nov;70(5):383-92. Epub 2007 Oct 10.

50.

NMR structural studies of the bacterial outer membrane protein OmpX in oriented lipid bilayer membranes.

Mahalakshmi R, Franzin CM, Choi J, Marassi FM.

Biochim Biophys Acta. 2007 Dec;1768(12):3216-24. Epub 2007 Aug 24.

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