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Items: 10

1.

Widespread long-range cis-regulatory elements in the maize genome.

Ricci WA, Lu Z, Ji L, Marand AP, Ethridge CL, Murphy NG, Noshay JM, Galli M, Mejía-Guerra MK, Colomé-Tatché M, Johannes F, Rowley MJ, Corces VG, Zhai J, Scanlon MJ, Buckler ES, Gallavotti A, Springer NM, Schmitz RJ, Zhang X.

Nat Plants. 2019 Dec;5(12):1237-1249. doi: 10.1038/s41477-019-0547-0. Epub 2019 Nov 18.

PMID:
31740773
2.

The prevalence, evolution and chromatin signatures of plant regulatory elements.

Lu Z, Marand AP, Ricci WA, Ethridge CL, Zhang X, Schmitz RJ.

Nat Plants. 2019 Dec;5(12):1250-1259. doi: 10.1038/s41477-019-0548-z. Epub 2019 Nov 18.

PMID:
31740772
3.

Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato.

Zeng Z, Zhang W, Marand AP, Zhu B, Buell CR, Jiang J.

Genome Biol. 2019 Jun 17;20(1):123. doi: 10.1186/s13059-019-1731-2.

4.

Residual Heterozygosity and Epistatic Interactions Underlie the Complex Genetic Architecture of Yield in Diploid Potato.

Marand AP, Jansky SH, Gage JL, Hamernik AJ, de Leon N, Jiang J.

Genetics. 2019 May;212(1):317-332. doi: 10.1534/genetics.119.302036. Epub 2019 Mar 18.

PMID:
30885982
5.

Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice.

Marand AP, Zhao H, Zhang W, Zeng Z, Fang C, Jiang J.

Plant Cell. 2019 Mar;31(3):645-662. doi: 10.1105/tpc.18.00750. Epub 2019 Jan 31.

PMID:
30705136
6.

Proliferation of Regulatory DNA Elements Derived from Transposable Elements in the Maize Genome.

Zhao H, Zhang W, Chen L, Wang L, Marand AP, Wu Y, Jiang J.

Plant Physiol. 2018 Apr;176(4):2789-2803. doi: 10.1104/pp.17.01467. Epub 2018 Feb 20.

7.

Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.

Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR.

Plant J. 2018 May;94(3):562-570. doi: 10.1111/tpj.13857. Epub 2018 Mar 22. Erratum in: Plant J. 2018 Oct;96(2):482.

8.

Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato.

Marand AP, Jansky SH, Zhao H, Leisner CP, Zhu X, Zeng Z, Crisovan E, Newton L, Hamernik AJ, Veilleux RE, Buell CR, Jiang J.

Genome Biol. 2017 Oct 30;18(1):203. doi: 10.1186/s13059-017-1326-8.

9.

Towards genome-wide prediction and characterization of enhancers in plants.

Marand AP, Zhang T, Zhu B, Jiang J.

Biochim Biophys Acta Gene Regul Mech. 2017 Jan;1860(1):131-139. doi: 10.1016/j.bbagrm.2016.06.006. Epub 2016 Jun 16. Review.

PMID:
27321818
10.

PlantDHS: a database for DNase I hypersensitive sites in plants.

Zhang T, Marand AP, Jiang J.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1148-53. doi: 10.1093/nar/gkv962. Epub 2015 Sep 22.

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