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Items: 1 to 50 of 93

1.

RNA polymerase III subunits C37/53 modulate rU:dA hybrid 3' end dynamics during transcription termination.

Mishra S, Maraia RJ.

Nucleic Acids Res. 2019 Jan 10;47(1):310-327. doi: 10.1093/nar/gky1109.

2.

La involvement in tRNA and other RNA processing events including differences among yeast and other eukaryotes.

Blewett NH, Maraia RJ.

Biochim Biophys Acta Gene Regul Mech. 2018 Apr;1861(4):361-372. doi: 10.1016/j.bbagrm.2018.01.013. Epub 2018 Jan 31. Review.

PMID:
29397330
3.

LARP4 mRNA codon-tRNA match contributes to LARP4 activity for ribosomal protein mRNA poly(A) tail length protection.

Mattijssen S, Arimbasseri AG, Iben JR, Gaidamakov S, Lee J, Hafner M, Maraia RJ.

Elife. 2017 Sep 12;6. pii: e28889. doi: 10.7554/eLife.28889.

4.

The La and related RNA-binding proteins (LARPs): structures, functions, and evolving perspectives.

Maraia RJ, Mattijssen S, Cruz-Gallardo I, Conte MR.

Wiley Interdiscip Rev RNA. 2017 Nov;8(6). doi: 10.1002/wrna.1430. Epub 2017 Aug 7. Review.

5.

A novel perivascular cell population in the zebrafish brain.

Venero Galanternik M, Castranova D, Gore AV, Blewett NH, Jung HM, Stratman AN, Kirby MR, Iben J, Miller MF, Kawakami K, Maraia RJ, Weinstein BM.

Elife. 2017 Apr 11;6. pii: e24369. doi: 10.7554/eLife.24369.

6.

Factors That Shape Eukaryotic tRNAomes:  Processing, Modification and Anticodon-Codon Use.

Maraia RJ, Arimbasseri AG.

Biomolecules. 2017 Mar 8;7(1). pii: E26. doi: 10.3390/biom7010026. Review.

7.

La Deletion from Mouse Brain Alters Pre-tRNA Metabolism and Accumulation of Pre-5.8S rRNA, with Neuron Death and Reactive Astrocytosis.

Blewett NH, Iben JR, Gaidamakov S, Maraia RJ.

Mol Cell Biol. 2017 May 2;37(10). pii: e00588-16. doi: 10.1128/MCB.00588-16. Print 2017 May 15.

8.

Active Center Control of Termination by RNA Polymerase III and tRNA Gene Transcription Levels In Vivo.

Rijal K, Maraia RJ.

PLoS Genet. 2016 Aug 12;12(8):e1006253. doi: 10.1371/journal.pgen.1006253. eCollection 2016 Aug.

9.

Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37.

Arimbasseri AG, Iben J, Wei FY, Rijal K, Tomizawa K, Hafner M, Maraia RJ.

RNA. 2016 Sep;22(9):1400-10. doi: 10.1261/rna.056259.116. Epub 2016 Jun 27.

10.

RNA Polymerase III Advances: Structural and tRNA Functional Views.

Arimbasseri AG, Maraia RJ.

Trends Biochem Sci. 2016 Jun;41(6):546-559. doi: 10.1016/j.tibs.2016.03.003. Epub 2016 Apr 8. Review.

11.

Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA.

Lamichhane TN, Arimbasseri AG, Rijal K, Iben JR, Wei FY, Tomizawa K, Maraia RJ.

RNA. 2016 Apr;22(4):583-96. doi: 10.1261/rna.054064.115. Epub 2016 Feb 8.

12.

RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification.

Arimbasseri AG, Blewett NH, Iben JR, Lamichhane TN, Cherkasova V, Hafner M, Maraia RJ.

PLoS Genet. 2015 Dec 31;11(12):e1005671. doi: 10.1371/journal.pgen.1005671. eCollection 2015 Dec.

13.

LARP4 Is Regulated by Tumor Necrosis Factor Alpha in a Tristetraprolin-Dependent Manner.

Mattijssen S, Maraia RJ.

Mol Cell Biol. 2015 Dec 7;36(4):574-84. doi: 10.1128/MCB.00804-15. Print 2016 Feb 15.

14.

A high density of cis-information terminates RNA Polymerase III on a 2-rail track.

Arimbasseri AG, Maraia RJ.

RNA Biol. 2016;13(2):166-71. doi: 10.1080/15476286.2015.1116677. Epub 2015 Dec 4.

15.

Structural biology: A transcriptional specialist resolved.

Maraia RJ, Rijal K.

Nature. 2015 Dec 10;528(7581):204-5. doi: 10.1038/nature16317. Epub 2015 Nov 25. No abstract available.

16.

TOR-dependent post-transcriptional regulation of autophagy.

Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Maraia RJ, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR.

Autophagy. 2015;11(12):2390-2. doi: 10.1080/15548627.2015.1091142.

17.

A conserved mechanism of TOR-dependent RCK-mediated mRNA degradation regulates autophagy.

Hu G, McQuiston T, Bernard A, Park YD, Qiu J, Vural A, Zhang N, Waterman SR, Blewett NH, Myers TG, Maraia RJ, Kehrl JH, Uzel G, Klionsky DJ, Williamson PR.

Nat Cell Biol. 2015 Jul;17(7):930-942. doi: 10.1038/ncb3189. Epub 2015 Jun 22.

18.

Mechanism of Transcription Termination by RNA Polymerase III Utilizes a Non-template Strand Sequence-Specific Signal Element.

Arimbasseri AG, Maraia RJ.

Mol Cell. 2015 Jun 18;58(6):1124-32. doi: 10.1016/j.molcel.2015.04.002. Epub 2015 May 7.

19.

Erratum for Lamichhane et al., lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ.

Mol Cell Biol. 2015 Apr;35(8):1477. doi: 10.1128/MCB.00170-15. No abstract available.

20.

Biochemical analysis of transcription termination by RNA polymerase III from yeast Saccharomyces cerevisiae.

Arimbasseri AG, Maraia RJ.

Methods Mol Biol. 2015;1276:185-98. doi: 10.1007/978-1-4939-2392-2_10.

21.

A methods review on use of nonsense suppression to study 3' end formation and other aspects of tRNA biogenesis.

Rijal K, Maraia RJ, Arimbasseri AG.

Gene. 2015 Feb 1;556(1):35-50. doi: 10.1016/j.gene.2014.11.034. Epub 2014 Nov 18. Review.

22.

Transcription. Comment on "Mechanism of eukaryotic RNA polymerase III transcription termination".

Arimbasseri AG, Kassavetis GA, Maraia RJ.

Science. 2014 Aug 1;345(6196):524. doi: 10.1126/science.1253783. Epub 2014 Jul 31.

23.

Different types of secondary information in the genetic code.

Maraia RJ, Iben JR.

RNA. 2014 Jul;20(7):977-84. doi: 10.1261/rna.044115.113. Review.

24.

Defective i6A37 modification of mitochondrial and cytosolic tRNAs results from pathogenic mutations in TRIT1 and its substrate tRNA.

Yarham JW, Lamichhane TN, Pyle A, Mattijssen S, Baruffini E, Bruni F, Donnini C, Vassilev A, He L, Blakely EL, Griffin H, Santibanez-Koref M, Bindoff LA, Ferrero I, Chinnery PF, McFarland R, Maraia RJ, Taylor RW.

PLoS Genet. 2014 Jun 5;10(6):e1004424. doi: 10.1371/journal.pgen.1004424. eCollection 2014 Jun.

25.

Comparative overview of RNA polymerase II and III transcription cycles, with focus on RNA polymerase III termination and reinitiation.

Arimbasseri AG, Rijal K, Maraia RJ.

Transcription. 2014;5(1):e27639. doi: 10.4161/trns.27369. Review.

26.

tRNA gene copy number variation in humans.

Iben JR, Maraia RJ.

Gene. 2014 Feb 25;536(2):376-84. doi: 10.1016/j.gene.2013.11.049. Epub 2013 Dec 14.

27.

Targeted deletion of the gene encoding the La autoantigen (Sjögren's syndrome antigen B) in B cells or the frontal brain causes extensive tissue loss.

Gaidamakov S, Maximova OA, Chon H, Blewett NH, Wang H, Crawford AK, Day A, Tulchin N, Crouch RJ, Morse HC 3rd, Blitzer RD, Maraia RJ.

Mol Cell Biol. 2014 Jan;34(1):123-31. doi: 10.1128/MCB.01010-13. Epub 2013 Nov 4.

28.

It's Sno'ing on Pol III at nuclear pores.

Maraia RJ, Arimbasseri AG.

Genome Biol. 2013;14(10):137.

29.

Human cells have a limited set of tRNA anticodon loop substrates of the tRNA isopentenyltransferase TRIT1 tumor suppressor.

Lamichhane TN, Mattijssen S, Maraia RJ.

Mol Cell Biol. 2013 Dec;33(24):4900-8. doi: 10.1128/MCB.01041-13. Epub 2013 Oct 14.

30.

Global 'bootprinting' reveals the elastic architecture of the yeast TFIIIB-TFIIIC transcription complex in vivo.

Nagarajavel V, Iben JR, Howard BH, Maraia RJ, Clark DJ.

Nucleic Acids Res. 2013 Sep;41(17):8135-43. doi: 10.1093/nar/gkt611. Epub 2013 Jul 15.

31.

Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

Lamichhane TN, Blewett NH, Crawford AK, Cherkasova VA, Iben JR, Begley TJ, Farabaugh PJ, Maraia RJ.

Mol Cell Biol. 2013 Aug;33(15):2918-29. doi: 10.1128/MCB.00278-13. Epub 2013 May 28. Erratum in: Mol Cell Biol. 2015 Apr;35(8):1477.

32.

Meeting report for Odd Pols 2012.

Roy-Engel AM, Moss T, Maraia RJ.

Gene. 2013 Aug 15;526(1):1-6. doi: 10.1016/j.gene.2013.04.009. Epub 2013 Apr 20.

33.

Distinguishing core and holoenzyme mechanisms of transcription termination by RNA polymerase III.

Arimbasseri AG, Maraia RJ.

Mol Cell Biol. 2013 Apr;33(8):1571-81. doi: 10.1128/MCB.01733-12. Epub 2013 Feb 11.

34.

Transcription termination by the eukaryotic RNA polymerase III.

Arimbasseri AG, Rijal K, Maraia RJ.

Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):318-30. doi: 10.1016/j.bbagrm.2012.10.006. Epub 2012 Oct 23. Review.

35.

RNA polymerase III mutants in TFIIFα-like C37 that cause terminator readthrough with no decrease in transcription output.

Rijal K, Maraia RJ.

Nucleic Acids Res. 2013 Jan 7;41(1):139-55. doi: 10.1093/nar/gks985. Epub 2012 Oct 23.

36.
37.

Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p.

Cherkasova V, Maury LL, Bacikova D, Pridham K, Bähler J, Maraia RJ.

Mol Biol Cell. 2012 Feb;23(3):480-91. doi: 10.1091/mbc.E11-08-0732. Epub 2011 Dec 7.

38.

Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases.

Lamichhane TN, Blewett NH, Maraia RJ.

RNA. 2011 Oct;17(10):1846-57. doi: 10.1261/rna.2628611. Epub 2011 Aug 26.

39.

3' processing of eukaryotic precursor tRNAs.

Maraia RJ, Lamichhane TN.

Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):362-75. doi: 10.1002/wrna.64. Review.

40.

Point mutations in the Rpb9-homologous domain of Rpc11 that impair transcription termination by RNA polymerase III.

Iben JR, Mazeika JK, Hasson S, Rijal K, Arimbasseri AG, Russo AN, Maraia RJ.

Nucleic Acids Res. 2011 Aug;39(14):6100-13. doi: 10.1093/nar/gkr182. Epub 2011 Mar 30.

41.

Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants.

Iben JR, Epstein JA, Bayfield MA, Bruinsma MW, Hasson S, Bacikova D, Ahmad D, Rockwell D, Kittler EL, Zapp ML, Maraia RJ.

Nucleic Acids Res. 2011 Jun;39(11):4728-42. doi: 10.1093/nar/gkr066. Epub 2011 Feb 11.

42.

La-related protein 4 binds poly(A), interacts with the poly(A)-binding protein MLLE domain via a variant PAM2w motif, and can promote mRNA stability.

Yang R, Gaidamakov SA, Xie J, Lee J, Martino L, Kozlov G, Crawford AK, Russo AN, Conte MR, Gehring K, Maraia RJ.

Mol Cell Biol. 2011 Feb;31(3):542-56. doi: 10.1128/MCB.01162-10. Epub 2010 Nov 22.

43.

Conserved and divergent features of the structure and function of La and La-related proteins (LARPs).

Bayfield MA, Yang R, Maraia RJ.

Biochim Biophys Acta. 2010 May-Jun;1799(5-6):365-78. doi: 10.1016/j.bbagrm.2010.01.011. Epub 2010 Feb 2. Review.

44.

Precursor-product discrimination by La protein during tRNA metabolism.

Bayfield MA, Maraia RJ.

Nat Struct Mol Biol. 2009 Apr;16(4):430-7. doi: 10.1038/nsmb.1573. Epub 2009 Mar 15.

45.

Cellular La protein shields nonsegmented negative-strand RNA viral leader RNA from RIG-I and enhances virus growth by diverse mechanisms.

Bitko V, Musiyenko A, Bayfield MA, Maraia RJ, Barik S.

J Virol. 2008 Aug;82(16):7977-87. doi: 10.1128/JVI.02762-07. Epub 2008 Jun 11.

46.

It's a mod mod tRNA world.

Maraia RJ, Blewett NH, Bayfield MA.

Nat Chem Biol. 2008 Mar;4(3):162-4. doi: 10.1038/nchembio0308-162. No abstract available.

PMID:
18277975
47.
48.

A La-related protein modulates 7SK snRNP integrity to suppress P-TEFb-dependent transcriptional elongation and tumorigenesis.

He N, Jahchan NS, Hong E, Li Q, Bayfield MA, Maraia RJ, Luo K, Zhou Q.

Mol Cell. 2008 Mar 14;29(5):588-99. doi: 10.1016/j.molcel.2008.01.003. Epub 2008 Jan 31.

49.

Mutation of RNA Pol III subunit rpc2/polr3b Leads to Deficiency of Subunit Rpc11 and disrupts zebrafish digestive development.

Yee NS, Gong W, Huang Y, Lorent K, Dolan AC, Maraia RJ, Pack M.

PLoS Biol. 2007 Nov;5(11):e312.

50.

Conservation of a masked nuclear export activity of La proteins and its effects on tRNA maturation.

Bayfield MA, Kaiser TE, Intine RV, Maraia RJ.

Mol Cell Biol. 2007 May;27(9):3303-12. Epub 2007 Feb 16.

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