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The science of food security.

Cole MB, Augustin MA, Robertson MJ, Manners JM.

NPJ Sci Food. 2018 Aug 6;2:14. doi: 10.1038/s41538-018-0021-9. eCollection 2018. Review.


Sequence divergence between spelt and common wheat.

Liu M, Zhao Q, Qi F, Stiller J, Tang S, Miao J, Vrána J, Holušová K, Liu D, Doležel J, Manners JM, Han B, Liu C.

Theor Appl Genet. 2018 May;131(5):1125-1132. doi: 10.1007/s00122-018-3064-z. Epub 2018 Feb 9.


Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.

Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K.

Sci Rep. 2017 Dec 8;7(1):17212. doi: 10.1038/s41598-017-17454-3.


MEDIATOR18 and MEDIATOR20 confer susceptibility to Fusarium oxysporum in Arabidopsis thaliana.

Fallath T, Kidd BN, Stiller J, Davoine C, Björklund S, Manners JM, Kazan K, Schenk PM.

PLoS One. 2017 Apr 25;12(4):e0176022. doi: 10.1371/journal.pone.0176022. eCollection 2017.


The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.).

Powell JJ, Carere J, Fitzgerald TL, Stiller J, Covarelli L, Xu Q, Gubler F, Colgrave ML, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Ann Bot. 2017 Mar 1;119(5):853-867. doi: 10.1093/aob/mcw207.


The defence-associated transcriptome of hexaploid wheat displays homoeolog expression and induction bias.

Powell JJ, Fitzgerald TL, Stiller J, Berkman PJ, Gardiner DM, Manners JM, Henry RJ, Kazan K.

Plant Biotechnol J. 2017 Apr;15(4):533-543. doi: 10.1111/pbi.12651. Epub 2016 Nov 11.


Enzyme-driven metabolomic screening: a proof-of-principle method for discovery of plant defence compounds targeted by pathogens.

Carere J, Colgrave ML, Stiller J, Liu C, Manners JM, Kazan K, Gardiner DM.

New Phytol. 2016 Nov;212(3):770-779. doi: 10.1111/nph.14067. Epub 2016 Jun 29.


Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.

Thatcher LF, Cevik V, Grant M, Zhai B, Jones JD, Manners JM, Kazan K.

J Exp Bot. 2016 Apr;67(8):2367-86. doi: 10.1093/jxb/erw040. Epub 2016 Feb 19.


The Fdb3 transcription factor of the Fusarium Detoxification of Benzoxazolinone gene cluster is required for MBOA but not BOA degradation in Fusarium pseudograminearum.

Kettle AJ, Carere J, Batley J, Manners JM, Kazan K, Gardiner DM.

Fungal Genet Biol. 2016 Mar;88:44-53. doi: 10.1016/j.fgb.2016.01.015. Epub 2016 Jan 29.


EffectorP: predicting fungal effector proteins from secretomes using machine learning.

Sperschneider J, Gardiner DM, Dodds PN, Tini F, Covarelli L, Singh KB, Manners JM, Taylor JM.

New Phytol. 2016 Apr;210(2):743-61. doi: 10.1111/nph.13794. Epub 2015 Dec 17.


Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat.

Zheng Z, Ma J, Stiller J, Zhao Q, Feng Q, Choulet F, Feuillet C, Zheng YL, Wei Y, Han B, Yan G, Manners JM, Liu C.

BMC Genomics. 2015 Oct 23;16:850. doi: 10.1186/s12864-015-2105-0.


Tissue-specific transcriptome analysis within the maturing sugarcane stalk reveals spatial regulation in the expression of cellulose synthase and sucrose transporter gene families.

Casu RE, Rae AL, Nielsen JM, Perroux JM, Bonnett GD, Manners JM.

Plant Mol Biol. 2015 Dec;89(6):607-28. doi: 10.1007/s11103-015-0388-9. Epub 2015 Oct 11.


A γ-lactamase from cereal infecting Fusarium spp. catalyses the first step in the degradation of the benzoxazolinone class of phytoalexins.

Kettle AJ, Carere J, Batley J, Benfield AH, Manners JM, Kazan K, Gardiner DM.

Fungal Genet Biol. 2015 Oct;83:1-9. doi: 10.1016/j.fgb.2015.08.005. Epub 2015 Aug 18.


Investigating the Association between Flowering Time and Defense in the Arabidopsis thaliana-Fusarium oxysporum Interaction.

Lyons R, Rusu A, Stiller J, Powell J, Manners JM, Kazan K.

PLoS One. 2015 Jun 2;10(6):e0127699. doi: 10.1371/journal.pone.0127699. eCollection 2015.


Advances and challenges in computational prediction of effectors from plant pathogenic fungi.

Sperschneider J, Dodds PN, Gardiner DM, Manners JM, Singh KB, Taylor JM.

PLoS Pathog. 2015 May 28;11(5):e1004806. doi: 10.1371/journal.ppat.1004806. eCollection 2015 May. No abstract available.


Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

Sperschneider J, Gardiner DM, Thatcher LF, Lyons R, Singh KB, Manners JM, Taylor JM.

Genome Biol Evol. 2015 May 19;7(6):1613-27. doi: 10.1093/gbe/evv092.


Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.

Lyons R, Stiller J, Powell J, Rusu A, Manners JM, Kazan K.

PLoS One. 2015 Apr 7;10(4):e0121902. doi: 10.1371/journal.pone.0121902. eCollection 2015.


Brachypodium as an emerging model for cereal-pathogen interactions.

Fitzgerald TL, Powell JJ, Schneebeli K, Hsia MM, Gardiner DM, Bragg JN, McIntyre CL, Manners JM, Ayliffe M, Watt M, Vogel JP, Henry RJ, Kazan K.

Ann Bot. 2015 Apr;115(5):717-31. doi: 10.1093/aob/mcv010. Review.


Degradation of the benzoxazolinone class of phytoalexins is important for virulence of Fusarium pseudograminearum towards wheat.

Kettle AJ, Batley J, Benfield AH, Manners JM, Kazan K, Gardiner DM.

Mol Plant Pathol. 2015 Dec;16(9):946-62. doi: 10.1111/mpp.12250. Epub 2015 Apr 15.


An assessment of heavy ion irradiation mutagenesis for reverse genetics in wheat (Triticum aestivum L.).

Fitzgerald TL, Powell JJ, Stiller J, Weese TL, Abe T, Zhao G, Jia J, McIntyre CL, Li Z, Manners JM, Kazan K.

PLoS One. 2015 Feb 26;10(2):e0117369. doi: 10.1371/journal.pone.0117369. eCollection 2015.


Transcriptome and allele specificity associated with a 3BL locus for Fusarium crown rot resistance in bread wheat.

Ma J, Stiller J, Zhao Q, Feng Q, Cavanagh C, Wang P, Gardiner D, Choulet F, Feuillet C, Zheng YL, Wei Y, Yan G, Han B, Manners JM, Liu C.

PLoS One. 2014 Nov 18;9(11):e113309. doi: 10.1371/journal.pone.0113309. eCollection 2014.


Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.

Sperschneider J, Ying H, Dodds PN, Gardiner DM, Upadhyaya NM, Singh KB, Manners JM, Taylor JM.

Front Plant Sci. 2014 Sep 1;5:372. doi: 10.3389/fpls.2014.00372. eCollection 2014.


The non-gibberellic acid-responsive semi-dwarfing gene uzu affects Fusarium crown rot resistance in barley.

Chen G, Yan W, Liu Y, Wei Y, Zhou M, Zheng YL, Manners JM, Liu C.

BMC Plant Biol. 2014 Jan 13;14:22. doi: 10.1186/1471-2229-14-22.


Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems.

Gardiner DM, Upadhyaya NM, Stiller J, Ellis JG, Dodds PN, Kazan K, Manners JM.

PLoS One. 2014 Jan 9;9(1):e84995. doi: 10.1371/journal.pone.0084995. eCollection 2014.


A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.

Sperschneider J, Gardiner DM, Taylor JM, Hane JK, Singh KB, Manners JM.

BMC Genomics. 2013 Nov 20;14:807. doi: 10.1186/1471-2164-14-807.


Fusarium pathogenomics.

Ma LJ, Geiser DM, Proctor RH, Rooney AP, O'Donnell K, Trail F, Gardiner DM, Manners JM, Kazan K.

Annu Rev Microbiol. 2013;67:399-416. doi: 10.1146/annurev-micro-092412-155650. Review.


Genome sequences of six wheat-infecting fusarium species isolates.

Moolhuijzen PM, Manners JM, Wilcox SA, Bellgard MI, Gardiner DM.

Genome Announc. 2013 Sep 5;1(5). pii: e00670-13. doi: 10.1128/genomeA.00670-13.


An ABC pleiotropic drug resistance transporter of Fusarium graminearum with a role in crown and root diseases of wheat.

Gardiner DM, Stephens AE, Munn AL, Manners JM.

FEMS Microbiol Lett. 2013 Nov;348(1):36-45. doi: 10.1111/1574-6968.12240. Epub 2013 Sep 2.


Ethylene response factor 6 is a regulator of reactive oxygen species signaling in Arabidopsis.

Sewelam N, Kazan K, Thomas-Hall SR, Kidd BN, Manners JM, Schenk PM.

PLoS One. 2013 Aug 5;8(8):e70289. doi: 10.1371/journal.pone.0070289. Print 2013.


Cross-kingdom gene transfer facilitates the evolution of virulence in fungal pathogens.

Gardiner DM, Kazan K, Manners JM.

Plant Sci. 2013 Sep;210:151-8. doi: 10.1016/j.plantsci.2013.06.002. Epub 2013 Jun 13. Review.


Genome Sequences of Pseudomonas spp. Isolated from Cereal Crops.

Gardiner DM, Stiller J, Covarelli L, Lindeberg M, Shivas RG, Manners JM.

Genome Announc. 2013 May 9;1(3). pii: e00209-13. doi: 10.1128/genomeA.00209-13.


Jasmonate biosynthesis and signaling in monocots: a comparative overview.

Lyons R, Manners JM, Kazan K.

Plant Cell Rep. 2013 Jun;32(6):815-27. doi: 10.1007/s00299-013-1400-y. Epub 2013 Mar 2. Review.


Exploiting pathogens' tricks of the trade for engineering of plant disease resistance: challenges and opportunities.

Grant MR, Kazan K, Manners JM.

Microb Biotechnol. 2013 May;6(3):212-22. doi: 10.1111/1751-7915.12017. Epub 2013 Jan 2. Review.


MYC2: the master in action.

Kazan K, Manners JM.

Mol Plant. 2013 May;6(3):686-703. doi: 10.1093/mp/sss128. Epub 2012 Nov 9. Review.


Lateral organ boundaries domain transcription factors: new roles in plant defense.

Thatcher LF, Kazan K, Manners JM.

Plant Signal Behav. 2012 Dec;7(12):1702-4. doi: 10.4161/psb.22097. Epub 2012 Oct 16. Review.


Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts.

Gardiner DM, McDonald MC, Covarelli L, Solomon PS, Rusu AG, Marshall M, Kazan K, Chakraborty S, McDonald BA, Manners JM.

PLoS Pathog. 2012 Sep;8(9):e1002952. doi: 10.1371/journal.ppat.1002952. Epub 2012 Sep 27.


MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis.

Çevik V, Kidd BN, Zhang P, Hill C, Kiddle S, Denby KJ, Holub EB, Cahill DM, Manners JM, Schenk PM, Beynon J, Kazan K.

Plant Physiol. 2012 Sep;160(1):541-55. doi: 10.1104/pp.112.202697. Epub 2012 Jul 22.


The lateral organ boundaries domain transcription factor LBD20 functions in Fusarium wilt Susceptibility and jasmonate signaling in Arabidopsis.

Thatcher LF, Powell JJ, Aitken EA, Kazan K, Manners JM.

Plant Physiol. 2012 Sep;160(1):407-18. doi: 10.1104/pp.112.199067. Epub 2012 Jul 10.


JAZ repressors and the orchestration of phytohormone crosstalk.

Kazan K, Manners JM.

Trends Plant Sci. 2012 Jan;17(1):22-31. doi: 10.1016/j.tplants.2011.10.006. Epub 2011 Nov 21. Review.


On the trail of a cereal killer: recent advances in Fusarium graminearum pathogenomics and host resistance.

Kazan K, Gardiner DM, Manners JM.

Mol Plant Pathol. 2012 May;13(4):399-413. doi: 10.1111/j.1364-3703.2011.00762.x. Epub 2011 Nov 20. Review.


A highly conserved effector in Fusarium oxysporum is required for full virulence on Arabidopsis.

Thatcher LF, Gardiner DM, Kazan K, Manners JM.

Mol Plant Microbe Interact. 2012 Feb;25(2):180-90. doi: 10.1094/MPMI-08-11-0212.


Diverse roles of the Mediator complex in plants.

Kidd BN, Cahill DM, Manners JM, Schenk PM, Kazan K.

Semin Cell Dev Biol. 2011 Sep;22(7):741-8. doi: 10.1016/j.semcdb.2011.07.012. Epub 2011 Jul 23. Review.


The interplay between light and jasmonate signalling during defence and development.

Kazan K, Manners JM.

J Exp Bot. 2011 Aug;62(12):4087-100. doi: 10.1093/jxb/err142. Epub 2011 Jun 24. Review.


Auxin signaling and transport promote susceptibility to the root-infecting fungal pathogen Fusarium oxysporum in Arabidopsis.

Kidd BN, Kadoo NY, Dombrecht B, Tekeoglu M, Gardiner DM, Thatcher LF, Aitken EA, Schenk PM, Manners JM, Kazan K.

Mol Plant Microbe Interact. 2011 Jun;24(6):733-48. doi: 10.1094/MPMI-08-10-0194.


Identification of drought-response genes and a study of their expression during sucrose accumulation and water deficit in sugarcane culms.

Iskandar HM, Casu RE, Fletcher AT, Schmidt S, Xu J, Maclean DJ, Manners JM, Bonnett GD.

BMC Plant Biol. 2011 Jan 13;11:12. doi: 10.1186/1471-2229-11-12.


Early activation of wheat polyamine biosynthesis during Fusarium head blight implicates putrescine as an inducer of trichothecene mycotoxin production.

Gardiner DM, Kazan K, Praud S, Torney FJ, Rusu A, Manners JM.

BMC Plant Biol. 2010 Dec 30;10:289. doi: 10.1186/1471-2229-10-289.


A high-throughput method for the detection of homologous gene deletions in hexaploid wheat.

Fitzgerald TL, Kazan K, Li Z, Morell MK, Manners JM.

BMC Plant Biol. 2010 Nov 29;10:264. doi: 10.1186/1471-2229-10-264.


Plant height affects Fusarium crown rot severity in wheat.

Liu YX, Yang XM, Ma J, Wei YM, Zheng YL, Ma HX, Yao JB, Yan GJ, Wang YG, Manners JM, Liu CJ.

Phytopathology. 2010 Dec;100(12):1276-81. doi: 10.1094/PHYTO-05-10-0142.


Plant mediator: mediating the jasmonate response.

Kidd BN, Aitken EA, Schenk PM, Manners JM, Kazan K.

Plant Signal Behav. 2010 Jun;5(6):718-20. Epub 2010 Jun 1.


Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.

Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M.

Nature. 2010 Mar 18;464(7287):367-73. doi: 10.1038/nature08850.

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