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Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.

Kim HS, Jeon S, Kim C, Kim YK, Cho YS, Kim J, Blazyte A, Manica A, Lee S, Bhak J.

Gigascience. 2019 Dec 1;8(12). pii: giz125. doi: 10.1093/gigascience/giz125.


Environmental conditions do not predict diversification rates in the Bantu languages.

Beyer R, Singarayer JS, Stock JT, Manica A.

Heliyon. 2019 Oct 19;5(10):e02630. doi: 10.1016/j.heliyon.2019.e02630. eCollection 2019 Oct.


A global-level assessment of the effectiveness of protected areas at resisting anthropogenic pressures.

Geldmann J, Manica A, Burgess ND, Coad L, Balmford A.

Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23209-23215. doi: 10.1073/pnas.1908221116. Epub 2019 Oct 28.


Coping with strangers: how familiarity and active interactions shape group coordination in Corydoras aeneus.

Riley RJ, Gillie ER, Horswill C, Johnstone RA, Boogert NJ, Manica A.

R Soc Open Sci. 2019 Sep 25;6(9):190587. doi: 10.1098/rsos.190587. eCollection 2019 Sep.


Increased cytokines production and oxidative stress are related with purinergic signaling and cell survival in post-thyroidectomy hypothyroidism.

Baldissarelli J, Mânica A, Pillat MM, Bagatini MD, Leal DBR, Abdalla FH, Morsch VM, Ulrich H, Bornemann CP, Chitolina Schetinger MR.

Mol Cell Endocrinol. 2020 Jan 1;499:110594. doi: 10.1016/j.mce.2019.110594. Epub 2019 Sep 24.


Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles.

Cho YS, Jun JH, Kim JA, Kim HM, Chung O, Kang SG, Park JY, Kim HJ, Kim S, Kim HJ, Jang JH, Na KJ, Kim J, Park SG, Lee HY, Manica A, Mindell DP, Fuchs J, Edwards JS, Weber JA, Witt CC, Yeo JH, Kim S, Bhak J.

Genome Biol. 2019 Aug 29;20(1):181. doi: 10.1186/s13059-019-1793-1.


The configuration of Northern Hemisphere ice sheets through the Quaternary.

Batchelor CL, Margold M, Krapp M, Murton DK, Dalton AS, Gibbard PL, Stokes CR, Murton JB, Manica A.

Nat Commun. 2019 Aug 16;10(1):3713. doi: 10.1038/s41467-019-11601-2.


MicroRNA-615-5p Regulates Angiogenesis and Tissue Repair by Targeting AKT/eNOS (Protein Kinase B/Endothelial Nitric Oxide Synthase) Signaling in Endothelial Cells.

Icli B, Wu W, Ozdemir D, Li H, Cheng HS, Haemmig S, Liu X, Giatsidis G, Avci SN, Lee N, Guimaraes RB, Manica A, Marchini JF, Rynning SE, Risnes I, Hollan I, Croce K, Yang X, Orgill DP, Feinberg MW.

Arterioscler Thromb Vasc Biol. 2019 Jul;39(7):1458-1474. doi: 10.1161/ATVBAHA.119.312726. Epub 2019 May 16.


Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding.

Hanghøj K, Moltke I, Andersen PA, Manica A, Korneliussen TS.

Gigascience. 2019 May 1;8(5). pii: giz034. doi: 10.1093/gigascience/giz034.


When males live longer: Resource-driven territorial behavior drives sex-specific survival in snakes.

Lee CY, Pike DA, Tseng HY, Hsu JY, Huang SL, Shaner PL, Liao CP, Manica A, Huang WS.

Sci Adv. 2019 Apr 24;5(4):eaar5478. doi: 10.1126/sciadv.aar5478. eCollection 2019 Apr.


A western route of prehistoric human migration from Africa into the Iberian Peninsula.

González-Fortes G, Tassi F, Trucchi E, Henneberger K, Paijmans JLA, Díez-Del-Molino D, Schroeder H, Susca RR, Barroso-Ruíz C, Bermudez FJ, Barroso-Medina C, Bettencourt AMS, Sampaio HA, Grandal-d'Anglade A, Salas A, de Lombera-Hermida A, Fabregas Valcarce R, Vaquero M, Alonso S, Lozano M, Rodríguez-Alvarez XP, Fernández-Rodríguez C, Manica A, Hofreiter M, Barbujani G.

Proc Biol Sci. 2019 Jan 30;286(1895):20182288. doi: 10.1098/rspb.2018.2288.


Did Going North Give Us Migraine? An Evolutionary Approach on Understanding Latitudinal Differences in Migraine Epidemiology.

Viganò A, Manica A, Di Piero V, Leonardi M.

Headache. 2019 Apr;59(4):632-634. doi: 10.1111/head.13520. Epub 2019 Apr 7.


The signaling effects of ATP on melanoma-like skin cancer.

Mânica A, da Silva Rosa Bonadiman B, Cardoso AM, Paiz A, Siepko C, de Souza JVG, Moreno M, Moreno A, Schetinger MRC, Morsch VM, Bagatini MD.

Cell Signal. 2019 Jul;59:122-130. doi: 10.1016/j.cellsig.2019.03.021. Epub 2019 Mar 26.


The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation.

Kim HM, Weber JA, Lee N, Park SG, Cho YS, Bhak Y, Lee N, Jeon Y, Jeon S, Luria V, Karger A, Kirschner MW, Jo YJ, Woo S, Shin K, Chung O, Ryu JC, Yim HS, Lee JH, Edwards JS, Manica A, Bhak J, Yum S.

BMC Biol. 2019 Mar 29;17(1):28. doi: 10.1186/s12915-019-0643-7.


California swordfish fishery: Maximizing the catch rate of a target species simultaneously minimizes bycatch rates.

Horswill C, Manica A.

Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7172-7173. doi: 10.1073/pnas.1820821116. Epub 2019 Mar 19. No abstract available.


Parallel adaptation of rabbit populations to myxoma virus.

Alves JM, Carneiro M, Cheng JY, Lemos de Matos A, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso S, Bell DJ, Belmont L, Day JP, Fuller SJ, Marchandeau S, Palmer WJ, Queney G, Surridge AK, Vieira FG, McFadden G, Nielsen R, Gilbert MTP, Esteves PJ, Ferrand N, Jiggins FM.

Science. 2019 Mar 22;363(6433):1319-1326. doi: 10.1126/science.aau7285. Epub 2019 Feb 14.


Antiproliferative and apoptotic effects of caffeic acid on SK-Mel-28 human melanoma cancer cells.

Pelinson LP, Assmann CE, Palma TV, da Cruz IBM, Pillat MM, Mânica A, Stefanello N, Weis GCC, de Oliveira Alves A, de Andrade CM, Ulrich H, Morsch VMM, Schetinger MRC, Bagatini MD.

Mol Biol Rep. 2019 Apr;46(2):2085-2092. doi: 10.1007/s11033-019-04658-1. Epub 2019 Feb 4.


MicroRNA-135a-3p regulates angiogenesis and tissue repair by targeting p38 signaling in endothelial cells.

Icli B, Wu W, Ozdemir D, Li H, Haemmig S, Liu X, Giatsidis G, Cheng HS, Avci SN, Kurt M, Lee N, Guimaraes RB, Manica A, Marchini JF, Rynning SE, Risnes I, Hollan I, Croce K, Orgill DP, Feinberg MW.

FASEB J. 2019 Apr;33(4):5599-5614. doi: 10.1096/fj.201802063RR. Epub 2019 Jan 22.


Predation drives recurrent convergence of an interspecies mutualism.

Feeney WE, Brooker RM, Johnston LN, Gilbert JDJ, Besson M, Lecchini D, Dixson DL, Cowman PF, Manica A.

Ecol Lett. 2019 Feb;22(2):256-264. doi: 10.1111/ele.13184. Epub 2018 Nov 27.


Human variation in the shape of the birth canal is significant and geographically structured.

Betti L, Manica A.

Proc Biol Sci. 2018 Oct 24;285(1889). pii: 20181807. doi: 10.1098/rspb.2018.1807.


High-intensity intermittent exercise increases adenosine hydrolysis in platelets and lymphocytes and promotes platelet aggregation in futsal athletes.

Miron VV, Baldissarelli J, Pranke G, Mânica A, da Silva Rosa Bonadiman B, Manfredi LH, Morsch VM, Schetinger MRC, Machado Cardoso A.

Platelets. 2019;30(7):878-885. doi: 10.1080/09537104.2018.1529299. Epub 2018 Oct 22.


A genomic Neolithic time transect of hunter-farmer admixture in central Poland.

Fernandes DM, Strapagiel D, Borówka P, Marciniak B, Żądzińska E, Sirak K, Siska V, Grygiel R, Carlsson J, Manica A, Lorkiewicz W, Pinhasi R.

Sci Rep. 2018 Oct 5;8(1):14879. doi: 10.1038/s41598-018-33067-w.


Global demographic history of human populations inferred from whole mitochondrial genomes.

Miller EF, Manica A, Amos W.

R Soc Open Sci. 2018 Aug 22;5(8):180543. doi: 10.1098/rsos.180543. eCollection 2018 Aug.


Quantifying individual specialization using tracking data: a case study on two species of albatrosses.

Bonnet-Lebrun AS, Phillips RA, Manica A, Rodrigues ASL.

Mar Biol. 2018;165(10):152. doi: 10.1007/s00227-018-3408-x. Epub 2018 Sep 8.


The Impact of Purinergic System Enzymes on Noncommunicable, Neurological, and Degenerative Diseases.

Bagatini MD, Dos Santos AA, Cardoso AM, Mânica A, Reschke CR, Carvalho FB.

J Immunol Res. 2018 Aug 12;2018:4892473. doi: 10.1155/2018/4892473. eCollection 2018. Review.


Late Quaternary horses in Eurasia in the face of climate and vegetation change.

Leonardi M, Boschin F, Giampoudakis K, Beyer RM, Krapp M, Bendrey R, Sommer R, Boscato P, Manica A, Nogues-Bravo D, Orlando L.

Sci Adv. 2018 Jul 25;4(7):eaar5589. doi: 10.1126/sciadv.aar5589. eCollection 2018 Jul.


Acute responses of hemodynamic and oxidative stress parameters to aerobic exercise with blood flow restriction in hypertensive elderly women.

Barili A, Corralo VDS, Cardoso AM, Mânica A, Bonadiman BDSR, Bagatini MD, Da Silva-Grigoletto ME, de Oliveira GG, De Sá CA.

Mol Biol Rep. 2018 Oct;45(5):1099-1109. doi: 10.1007/s11033-018-4261-1. Epub 2018 Jul 20.


Did Our Species Evolve in Subdivided Populations across Africa, and Why Does It Matter?

Scerri EML, Thomas MG, Manica A, Gunz P, Stock JT, Stringer C, Grove M, Groucutt HS, Timmermann A, Rightmire GP, d'Errico F, Tryon CA, Drake NA, Brooks AS, Dennell RW, Durbin R, Henn BM, Lee-Thorp J, deMenocal P, Petraglia MD, Thompson JC, Scally A, Chikhi L.

Trends Ecol Evol. 2018 Aug;33(8):582-594. doi: 10.1016/j.tree.2018.05.005. Epub 2018 Jul 11.


Ancient goat genomes reveal mosaic domestication in the Fertile Crescent.

Daly KG, Maisano Delser P, Mullin VE, Scheu A, Mattiangeli V, Teasdale MD, Hare AJ, Burger J, Verdugo MP, Collins MJ, Kehati R, Erek CM, Bar-Oz G, Pompanon F, Cumer T, Çakırlar C, Mohaseb AF, Decruyenaere D, Davoudi H, Çevik Ö, Rollefson G, Vigne JD, Khazaeli R, Fathi H, Doost SB, Rahimi Sorkhani R, Vahdati AA, Sauer EW, Azizi Kharanaghi H, Maziar S, Gasparian B, Pinhasi R, Martin L, Orton D, Arbuckle BS, Benecke N, Manica A, Horwitz LK, Mashkour M, Bradley DG.

Science. 2018 Jul 6;361(6397):85-88. doi: 10.1126/science.aas9411.


Ancient human parallel lineages within North America contributed to a coastal expansion.

Scheib CL, Li H, Desai T, Link V, Kendall C, Dewar G, Griffith PW, Mörseburg A, Johnson JR, Potter A, Kerr SL, Endicott P, Lindo J, Haber M, Xue Y, Tyler-Smith C, Sandhu MS, Lorenz JG, Randall TD, Faltyskova Z, Pagani L, Danecek P, O'Connell TC, Martz P, Boraas AS, Byrd BF, Leventhal A, Cambra R, Williamson R, Lesage L, Holguin B, Ygnacio-De Soto E, Rosas J, Metspalu M, Stock JT, Manica A, Scally A, Wegmann D, Malhi RS, Kivisild T.

Science. 2018 Jun 1;360(6392):1024-1027. doi: 10.1126/science.aar6851.


Energy efficiency drives the global seasonal distribution of birds.

Somveille M, Rodrigues ASL, Manica A.

Nat Ecol Evol. 2018 Jun;2(6):962-969. doi: 10.1038/s41559-018-0556-9. Epub 2018 May 7.


Repeatable group differences in the collective behaviour of stickleback shoals across ecological contexts.

Jolles JW, Laskowski KL, Boogert NJ, Manica A.

Proc Biol Sci. 2018 Feb 14;285(1872). pii: 20172629. doi: 10.1098/rspb.2017.2629.


Infections on the move: how transient phases of host movement influence disease spread.

Daversa DR, Fenton A, Dell AI, Garner TWJ, Manica A.

Proc Biol Sci. 2017 Dec 20;284(1869). pii: 20171807. doi: 10.1098/rspb.2017.1807. Review.


High levels of extracellular ATP lead to chronic inflammatory response in melanoma patients.

Manica A, Da Silva AM, Cardoso AM, Moreno M, Leal DB, Dutra Da Silva A, Schetinger MRC, Morsch VMM, Bagatini MD.

J Cell Biochem. 2018 May;119(5):3980-3988. doi: 10.1002/jcb.26551. Epub 2018 Jan 22.


Estimating mobility using sparse data: Application to human genetic variation.

Loog L, Mirazón Lahr M, Kovacevic M, Manica A, Eriksson A, Thomas MG.

Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12213-12218. doi: 10.1073/pnas.1703642114. Epub 2017 Oct 30.


Turn-taking in cooperative offspring care: by-product of individual provisioning behavior or active response rule?

Savage JL, Browning LE, Manica A, Russell AF, Johnstone RA.

Behav Ecol Sociobiol. 2017;71(11):162. doi: 10.1007/s00265-017-2391-4. Epub 2017 Oct 17.


Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes.

Cho YS, Kim H, Kim HM, Jho S, Jun J, Lee YJ, Chae KS, Kim CG, Kim S, Eriksson A, Edwards JS, Lee S, Kim BC, Manica A, Oh TK, Church GM, Bhak J.

Nat Commun. 2017 Oct 9;8:16168. doi: 10.1038/ncomms16168.


Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.

Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T, Ko A, Rasmussen S, Dupanloup I, Nigst PR, Bosch MD, Renaud G, Allentoft ME, Margaryan A, Vasilyev SV, Veselovskaya EV, Borutskaya SB, Deviese T, Comeskey D, Higham T, Manica A, Foley R, Meltzer DJ, Nielsen R, Excoffier L, Mirazon Lahr M, Orlando L, Willerslev E.

Science. 2017 Nov 3;358(6363):659-662. doi: 10.1126/science.aao1807. Epub 2017 Oct 5.


Consistent Individual Differences Drive Collective Behavior and Group Functioning of Schooling Fish.

Jolles JW, Boogert NJ, Sridhar VH, Couzin ID, Manica A.

Curr Biol. 2017 Sep 25;27(18):2862-2868.e7. doi: 10.1016/j.cub.2017.08.004. Epub 2017 Sep 7.


An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization.

Leonardi M, Barbujani G, Manica A.

Sci Rep. 2017 Jun 14;7(1):3525. doi: 10.1038/s41598-017-03717-6. Erratum in: Sci Rep. 2018 Jan 9;8(1):682.


Land-use strategies to balance livestock production, biodiversity conservation and carbon storage in Yucatán, Mexico.

Williams DR, Alvarado F, Green RE, Manica A, Phalan B, Balmford A.

Glob Chang Biol. 2017 Dec;23(12):5260-5272. doi: 10.1111/gcb.13791. Epub 2017 Jul 10.


Paleogenomic Evidence for Multi-generational Mixing between Neolithic Farmers and Mesolithic Hunter-Gatherers in the Lower Danube Basin.

González-Fortes G, Jones ER, Lightfoot E, Bonsall C, Lazar C, Grandal-d'Anglade A, Garralda MD, Drak L, Siska V, Simalcsik A, Boroneanţ A, Vidal Romaní JR, Vaqueiro Rodríguez M, Arias P, Pinhasi R, Manica A, Hofreiter M.

Curr Biol. 2017 Jun 19;27(12):1801-1810.e10. doi: 10.1016/j.cub.2017.05.023. Epub 2017 May 25.


Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices.

Loog L, Thomas MG, Barnett R, Allen R, Sykes N, Paxinos PD, Lebrasseur O, Dobney K, Peters J, Manica A, Larson G, Eriksson A.

Mol Biol Evol. 2017 Aug 1;34(8):1981-1990. doi: 10.1093/molbev/msx142.


Empirical phylogenies and species abundance distributions are consistent with preequilibrium dynamics of neutral community models with gene flow.

Bonnet-Lebrun AS, Manica A, Eriksson A, Rodrigues ASL.

Evolution. 2017 May;71(5):1149-1163. doi: 10.1111/evo.13228. Epub 2017 May 4.


Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago.

Siska V, Jones ER, Jeon S, Bhak Y, Kim HM, Cho YS, Kim H, Lee K, Veselovskaya E, Balueva T, Gallego-Llorente M, Hofreiter M, Bradley DG, Eriksson A, Pinhasi R, Bhak J, Manica A.

Sci Adv. 2017 Feb 1;3(2):e1601877. doi: 10.1126/sciadv.1601877. eCollection 2017 Feb.


The Neolithic Transition in the Baltic Was Not Driven by Admixture with Early European Farmers.

Jones ER, Zarina G, Moiseyev V, Lightfoot E, Nigst PR, Manica A, Pinhasi R, Bradley DG.

Curr Biol. 2017 Feb 20;27(4):576-582. doi: 10.1016/j.cub.2016.12.060. Epub 2017 Feb 2.


An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes.

Cho YS, Kim H, Kim HM, Jho S, Jun J, Lee YJ, Chae KS, Kim CG, Kim S, Eriksson A, Edwards JS, Lee S, Kim BC, Manica A, Oh TK, Church GM, Bhak J.

Nat Commun. 2016 Nov 24;7:13637. doi: 10.1038/ncomms13637. Erratum in: Nat Commun. 2017 Oct 09;8:16168.


Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly.

Kim S, Cho YS, Kim HM, Chung O, Kim H, Jho S, Seomun H, Kim J, Bang WY, Kim C, An J, Bae CH, Bhak Y, Jeon S, Yoon H, Kim Y, Jun J, Lee H, Cho S, Uphyrkina O, Kostyria A, Goodrich J, Miquelle D, Roelke M, Lewis J, Yurchenko A, Bankevich A, Cho J, Lee S, Edwards JS, Weber JA, Cook J, Kim S, Lee H, Manica A, Lee I, O'Brien SJ, Bhak J, Yeo JH.

Genome Biol. 2016 Oct 11;17(1):211.


Estimating economic losses to tourism in Africa from the illegal killing of elephants.

Naidoo R, Fisher B, Manica A, Balmford A.

Nat Commun. 2016 Nov 1;7:13379. doi: 10.1038/ncomms13379.

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