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Isolation of a Halogen-Bonded Complex Formed between Methane and Chlorine Monofluoride and Characterisation by Rotational Spectroscopy and Ab Initio Calculations.

Legon AC, Lister DG, Holloway JH, Mani D, Arunan E.

Molecules. 2019 Nov 22;24(23). pii: E4257. doi: 10.3390/molecules24234257.


Proteomic analyses of ECM during pancreatic ductal adenocarcinoma progression reveal different contributions by tumor and stromal cells.

Tian C, Clauser KR, Öhlund D, Rickelt S, Huang Y, Gupta M, Mani DR, Carr SA, Tuveson DA, Hynes RO.

Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19609-19618. doi: 10.1073/pnas.1908626116. Epub 2019 Sep 4.


The efficacy of muscle energy techniques in symptomatic and asymptomatic subjects: a systematic review.

Thomas E, Cavallaro AR, Mani D, Bianco A, Palma A.

Chiropr Man Therap. 2019 Aug 27;27:35. doi: 10.1186/s12998-019-0258-7. eCollection 2019. Review.


Observation of the Low-Frequency Spectrum of the Water Dimer as a Sensitive Test of the Water Dimer Potential and Dipole Moment Surfaces.

Schwan R, Qu C, Mani D, Pal N, van der Meer L, Redlich B, Leforestier C, Bowman JM, Schwaab G, Havenith M.

Angew Chem Int Ed Engl. 2019 Sep 9;58(37):13119-13126. doi: 10.1002/anie.201906048. Epub 2019 Aug 14. Review.


Molecular characterization of colistin-resistant Klebsiella pneumoniae & its clonal relationship among Indian isolates.

Shankar C, Venkatesan M, Rajan R, Mani D, Lal B, Prakash JAJ, Anandan S, Pragasam AK, Walia K, Ohri VC, Veeraraghavan B.

Indian J Med Res. 2019 Feb;149(2):199-207. doi: 10.4103/ijmr.IJMR_2087_17.


Acid solvation versus dissociation at "stardust conditions": Reaction sequence matters.

Mani D, de Tudela RP, Schwan R, Pal N, Körning S, Forbert H, Redlich B, van der Meer AFG, Schwaab G, Marx D, Havenith M.

Sci Adv. 2019 Jun 7;5(6):eaav8179. doi: 10.1126/sciadv.aav8179. eCollection 2019 Jun.


Accessing different binding sites of a multifunctional molecule: IR spectroscopy of propargyl alcoholwater complexes in helium droplets.

Mani D, Pal N, Smialkowski M, Beakovic C, Schwaab G, Havenith M.

Phys Chem Chem Phys. 2019 Sep 25;21(37):20582-20587. doi: 10.1039/c9cp02055a.


Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells.

Myers SA, Rhoads A, Cocco AR, Peckner R, Haber AL, Schweitzer LD, Krug K, Mani DR, Clauser KR, Rozenblatt-Rosen O, Hacohen N, Regev A, Carr SA.

Mol Cell Proteomics. 2019 May;18(5):995-1009. doi: 10.1074/mcp.RA118.001259. Epub 2019 Feb 21.


Secondary amyloidosis associated with heroin use and recurrent infections - A case report.

Mani D.

Ann Med Surg (Lond). 2018 Nov 22;37:38-41. doi: 10.1016/j.amsu.2018.11.013. eCollection 2019 Jan.


A Curated Resource for Phosphosite-specific Signature Analysis.

Krug K, Mertins P, Zhang B, Hornbeck P, Raju R, Ahmad R, Szucs M, Mundt F, Forestier D, Jane-Valbuena J, Keshishian H, Gillette MA, Tamayo P, Mesirov JP, Jaffe JD, Carr SA, Mani DR.

Mol Cell Proteomics. 2019 Mar;18(3):576-593. doi: 10.1074/mcp.TIR118.000943. Epub 2018 Dec 18.


The modulation of force steadiness by electrical nerve stimulation applied to the wrist extensors differs for young and older adults.

Mani D, Feeney DF, Enoka RM.

Eur J Appl Physiol. 2019 Jan;119(1):301-310. doi: 10.1007/s00421-018-4025-6. Epub 2018 Oct 30.


Effect of angiotensin converting enzyme gene I/D polymorphism in South Indian children with nephrotic syndrome.

Kumar Ramanathan AS, Karuppiah B, Vijayan M, Raju K, Mani D, Chinniah R, Thirunavukkarasu M, Malini Ravi P, Illiayaraja Krishnan J, Senguttuvan P.

J Biomed Res. 2019 Jun 4;33(3):201-207. doi: 10.7555/JBR.32.20150095.


Detection of chromosomal and plasmid-mediated mechanisms of colistin resistance in Escherichia coli and Klebsiella pneumoniae from Indian food samples.

Ghafur A, Shankar C, GnanaSoundari P, Venkatesan M, Mani D, Thirunarayanan MA, Veeraraghavan B.

J Glob Antimicrob Resist. 2019 Mar;16:48-52. doi: 10.1016/j.jgar.2018.09.005. Epub 2018 Sep 20.


Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups.

Archer TC, Ehrenberger T, Mundt F, Gold MP, Krug K, Mah CK, Mahoney EL, Daniel CJ, LeNail A, Ramamoorthy D, Mertins P, Mani DR, Zhang H, Gillette MA, Clauser K, Noble M, Tang LC, Pierre-François J, Silterra J, Jensen J, Tamayo P, Korshunov A, Pfister SM, Kool M, Northcott PA, Sears RC, Lipton JO, Carr SA, Mesirov JP, Pomeroy SL, Fraenkel E.

Cancer Cell. 2018 Sep 10;34(3):396-410.e8. doi: 10.1016/j.ccell.2018.08.004.


Electrical nerve stimulation modulates motor unit activity in contralateral biceps brachii during steady isometric contractions.

Hamilton LD, Mani D, Almuklass AM, Davis LA, Vieira T, Botter A, Enoka RM.

J Neurophysiol. 2018 Nov 1;120(5):2603-2613. doi: 10.1152/jn.00235.2018. Epub 2018 Aug 29.


Homo-PROTACs for the Chemical Knockdown of Cereblon.

Steinebach C, Lindner S, Udeshi ND, Mani DC, Kehm H, Köpff S, Carr SA, Gütschow M, Krönke J.

ACS Chem Biol. 2018 Sep 21;13(9):2771-2782. doi: 10.1021/acschembio.8b00693. Epub 2018 Sep 5.


Crbn I391V is sufficient to confer in vivo sensitivity to thalidomide and its derivatives in mice.

Fink EC, McConkey M, Adams DN, Haldar SD, Kennedy JA, Guirguis AA, Udeshi ND, Mani DR, Chen M, Liddicoat B, Svinkina T, Nguyen AT, Carr SA, Ebert BL.

Blood. 2018 Oct 4;132(14):1535-1544. doi: 10.1182/blood-2018-05-852798. Epub 2018 Jul 31.


Motor unit activity, force steadiness, and perceived fatigability are correlated with mobility in older adults.

Mani D, Almuklass AM, Hamilton LD, Vieira TM, Botter A, Enoka RM.

J Neurophysiol. 2018 Oct 1;120(4):1988-1997. doi: 10.1152/jn.00192.2018. Epub 2018 Jul 25.


Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography-mass spectrometry.

Mertins P, Tang LC, Krug K, Clark DJ, Gritsenko MA, Chen L, Clauser KR, Clauss TR, Shah P, Gillette MA, Petyuk VA, Thomas SN, Mani DR, Mundt F, Moore RJ, Hu Y, Zhao R, Schnaubelt M, Keshishian H, Monroe ME, Zhang Z, Udeshi ND, Mani D, Davies SR, Townsend RR, Chan DW, Smith RD, Zhang H, Liu T, Carr SA.

Nat Protoc. 2018 Jul;13(7):1632-1661. doi: 10.1038/s41596-018-0006-9.


Variability in common synaptic input to motor neurons modulates both force steadiness and pegboard time in young and older adults.

Feeney DF, Mani D, Enoka RM.

J Physiol. 2018 Aug;596(16):3793-3806. doi: 10.1113/JP275658. Epub 2018 Jul 4.


Peg-manipulation capabilities of middle-aged adults have a greater influence on pegboard times than those of young and old adults.

Almuklass AM, Feeney DF, Mani D, Hamilton LD, Enoka RM.

Exp Brain Res. 2018 Aug;236(8):2165-2172. doi: 10.1007/s00221-018-5294-3. Epub 2018 May 22.


Neuromuscular electrical stimulation can improve mobility in older adults but the time course varies across tasks: Double-blind, randomized trial.

Mani D, Almuklass AM, Amiridis IG, Enoka RM.

Exp Gerontol. 2018 Jul 15;108:269-275. doi: 10.1016/j.exger.2018.04.018. Epub 2018 May 5.


The underlying pathophysiology and therapeutic approaches for osteoporosis.

Awasthi H, Mani D, Singh D, Gupta A.

Med Res Rev. 2018 Sep;38(6):2024-2057. doi: 10.1002/med.21504. Epub 2018 May 7. Review.


Merging Cation Exchange and Photocatalytic Charge Separation Efficiency in an Anatase/K2Ti4O9 Nanobelt Heterostructure for Metal Ions Fixation.

Ide Y, Shirae W, Takei T, Mani D, Henzie J.

Inorg Chem. 2018 May 21;57(10):6045-6050. doi: 10.1021/acs.inorgchem.8b00538. Epub 2018 May 3.


Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.

Khajuria RK, Munschauer M, Ulirsch JC, Fiorini C, Ludwig LS, McFarland SK, Abdulhay NJ, Specht H, Keshishian H, Mani DR, Jovanovic M, Ellis SR, Fulco CP, Engreitz JM, Schütz S, Lian J, Gripp KW, Weinberg OK, Pinkus GS, Gehrke L, Regev A, Lander ES, Gazda HT, Lee WY, Panse VG, Carr SA, Sankaran VG.

Cell. 2018 Mar 22;173(1):90-103.e19. doi: 10.1016/j.cell.2018.02.036. Epub 2018 Mar 15.


Mass Spectrometry-Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers.

Mundt F, Rajput S, Li S, Ruggles KV, Mooradian AD, Mertins P, Gillette MA, Krug K, Guo Z, Hoog J, Erdmann-Gilmore P, Primeau T, Huang S, Edwards DP, Wang X, Wang X, Kawaler E, Mani DR, Clauser KR, Gao F, Luo J, Davies SR, Johnson GL, Huang KL, Yoon CJ, Ding L, Fenyö D, Ellis MJ, Townsend RR, Held JM, Carr SA, Ma CX.

Cancer Res. 2018 May 15;78(10):2732-2746. doi: 10.1158/0008-5472.CAN-17-1990. Epub 2018 Feb 22.


Predisposition of Angiotensin-converting Enzyme Deletion/Deletion Genotype to Coronary Artery Disease with Type 2 Diabetes Mellitus in South India.

Mani D, Chinniah R, Ravi P, Swaminathan K, Janarthanan RA, Vijayan M, Raju K, Karuppiah B.

Indian J Endocrinol Metab. 2017 Nov-Dec;21(6):882-885. doi: 10.4103/ijem.IJEM_215_17.


Annotation of nerve cord transcriptome in earthworm Eisenia fetida.

Ponesakki V, Paul S, Mani DKS, Rajendiran V, Kanniah P, Sivasubramaniam S.

Genom Data. 2017 Oct 12;14:91-105. doi: 10.1016/j.gdata.2017.10.002. eCollection 2017 Dec.


Antioxidant and Hepatoprotective Potential of Swaras and Hima Extracts of Tinospora cordifolia and Boerhavia diffusa in Swiss albino Mice.

Kaushik A, Husain A, Awasthi H, Singh DP, Khan R, Mani D.

Pharmacogn Mag. 2017 Oct;13(Suppl 3):S658-S662. doi: 10.4103/pm.pm_448_16. Epub 2017 Oct 11.


Determination of ochratoxin A in tissues of wild boar (Sus scrofa L.) by enzymatic digestion (ED) coupled to high-performance liquid chromatography with a fluorescence detector (HPLC-FLD).

Luci G, Intorre L, Ferruzzi G, Mani D, Giuliotti L, Pretti C, Tognetti R, Bertini S, Meucci V.

Mycotoxin Res. 2018 Mar;34(1):1-8. doi: 10.1007/s12550-017-0292-z. Epub 2017 Aug 30.


Peg-manipulation capabilities during a test of manual dexterity differ for persons with multiple sclerosis and healthy individuals.

Almuklass AM, Feeney DF, Mani D, Hamilton LD, Enoka RM.

Exp Brain Res. 2017 Nov;235(11):3487-3493. doi: 10.1007/s00221-017-5075-4. Epub 2017 Aug 28.


Modulation of polypeptide conformation through donor-acceptor transformation of side-chain hydrogen bonding ligands.

Song Z, Mansbach RA, He H, Shih KC, Baumgartner R, Zheng N, Ba X, Huang Y, Mani D, Liu Y, Lin Y, Nieh MP, Ferguson AL, Yin L, Cheng J.

Nat Commun. 2017 Jul 21;8(1):92. doi: 10.1038/s41467-017-00079-5.


Potential cost savings by minimisation of blood sample delays on care decision making in urgent care services.

Bodansky DMS, Lumley SE, Chakraborty R, Mani D, Hodson J, Hallissey MT, Tucker ON.

Ann Med Surg (Lond). 2017 Jun 16;20:37-40. doi: 10.1016/j.amsu.2017.06.016. eCollection 2017 Aug.


Methods, Tools and Current Perspectives in Proteogenomics.

Ruggles KV, Krug K, Wang X, Clauser KR, Wang J, Payne SH, Fenyö D, Zhang B, Mani DR.

Mol Cell Proteomics. 2017 Jun;16(6):959-981. doi: 10.1074/mcp.MR117.000024. Epub 2017 Apr 29. Review.


Corrigendum: Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, Wyczalkowski MA, Erdmann-Gilmore P, Snider JE, Hoog J, Singh P, Niu B, Guo Z, Sun SQ, Sanati S, Kawaler E, Wang X, Scott A, Ye K, McLellan MD, Wendl MC, Malovannaya A, Held JM, Gillette MA, Fenyö D, Kinsinger CR, Mesri M, Rodriguez H, Davies SR, Perou CM, Ma C, Townsend RR, Chen X, Carr SA, Ellis MJ, Ding L.

Nat Commun. 2017 Apr 25;8:15479. doi: 10.1038/ncomms15479. No abstract available.


Proteogenomic integration reveals therapeutic targets in breast cancer xenografts.

Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, Wyczalkowski MA, Erdmann-Gilmore P, Snider JE, Hoog J, Singh P, Niu B, Guo Z, Sun SQ, Sanati S, Kawaler E, Wang X, Scott A, Ye K, McLellan MD, Wendl MC, Malovannaya A, Held JM, Gillette MA, Fenyö D, Kinsinger CR, Mesri M, Rodriguez H, Davies SR, Perou CM, Ma C, Reid Townsend R, Chen X, Carr SA, Ellis MJ, Ding L.

Nat Commun. 2017 Mar 28;8:14864. doi: 10.1038/ncomms14864.


New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins.

Abbatiello S, Ackermann BL, Borchers C, Bradshaw RA, Carr SA, Chalkley R, Choi M, Deutsch E, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss M, MacLean B, Mani DR, Neubert H, Smith D, Vitek O, Zimmerman L.

Mol Cell Proteomics. 2017 Mar;16(3):327-328. doi: 10.1074/mcp.E117.067801. Epub 2017 Feb 9. No abstract available.


Effects of aging upon the host response to implants.

Hachim D, Wang N, Lopresti ST, Stahl EC, Umeda YU, Rege RD, Carey ST, Mani D, Brown BN.

J Biomed Mater Res A. 2017 May;105(5):1281-1292. doi: 10.1002/jbm.a.36013. Epub 2017 Feb 14.


Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and insulinoma progression.

Naba A, Clauser KR, Mani DR, Carr SA, Hynes RO.

Sci Rep. 2017 Jan 10;7:40495. doi: 10.1038/srep40495.


An antidiabetic polyherbal phytomedicine confers stress resistance and extends lifespan in Caenorhabditis elegans.

Rathor L, Pant A, Awasthi H, Mani D, Pandey R.

Biogerontology. 2017 Feb;18(1):131-147. doi: 10.1007/s10522-016-9668-2. Epub 2016 Nov 16.


Helium droplet infrared spectroscopy of glycine and glycine-water aggregates.

Kaufmann M, Leicht D, Schwan R, Mani D, Schwaab G, Havenith M.

Phys Chem Chem Phys. 2016 Oct 12;18(40):28082-28090.


Transitioning from Targeted to Comprehensive Mass Spectrometry Using Genetic Algorithms.

Jaffe JD, Feeney CM, Patel J, Lu X, Mani DR.

J Am Soc Mass Spectrom. 2016 Nov;27(11):1745-1751. Epub 2016 Aug 25.


Correction: Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India.

Chinniah R, Vijayan M, Thirunavukkarasu M, Mani D, Raju K, Ravi PM, Sivanadham R, Chithan K, Nithyanandam M, Karuppiah B.

PLoS One. 2016 Aug 25;11(8):e0162055. doi: 10.1371/journal.pone.0162055. eCollection 2016.


Motor unit activity in biceps brachii of left-handed humans during sustained contractions with two load types.

Gould JR, Cleland BT, Mani D, Amiridis IG, Enoka RM.

J Neurophysiol. 2016 Sep 1;116(3):1358-65. doi: 10.1152/jn.00147.2016. Epub 2016 Jun 22.


Automated Microchromatography Enables Multiplexing of Immunoaffinity Enrichment of Peptides to Greater than 150 for Targeted MS-Based Assays.

Ippoliti PJ, Kuhn E, Mani DR, Fagbami L, Keshishian H, Burgess MW, Jaffe JD, Carr SA.

Anal Chem. 2016 Aug 2;88(15):7548-55. doi: 10.1021/acs.analchem.6b00946. Epub 2016 Jul 12.


Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India.

Chinniah R, Vijayan M, Thirunavukkarasu M, Mani D, Raju K, Ravi PM, Sivanadham R, C K, N M, Karuppiah B.

PLoS One. 2016 Jun 17;11(6):e0157468. doi: 10.1371/journal.pone.0157468. eCollection 2016. Erratum in: PLoS One. 2016;11(8):e0162055.


Proteogenomics connects somatic mutations to signalling in breast cancer.

Mertins P, Mani DR, Ruggles KV, Gillette MA, Clauser KR, Wang P, Wang X, Qiao JW, Cao S, Petralia F, Kawaler E, Mundt F, Krug K, Tu Z, Lei JT, Gatza ML, Wilkerson M, Perou CM, Yellapantula V, Huang KL, Lin C, McLellan MD, Yan P, Davies SR, Townsend RR, Skates SJ, Wang J, Zhang B, Kinsinger CR, Mesri M, Rodriguez H, Ding L, Paulovich AG, Fenyö D, Ellis MJ, Carr SA; NCI CPTAC.

Nature. 2016 Jun 2;534(7605):55-62. doi: 10.1038/nature18003. Epub 2016 May 25.


Hepatoprotective Effect of A Polyherbal Extract Containing Andrographis Paniculata, Tinospora Cordifolia and Solanum Nigrum Against Paracetamol Induced Hepatotoxicity.

Singh DP, Awasthi H, Luqman S, Singh S, Mani D.

Pharmacogn Mag. 2015 Oct;11(Suppl 3):S375-9. doi: 10.4103/0973-1296.168945.


Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.

Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Boja E, Carr SA, Chan DW, Chen X, Chen J, Davies SR, Ellis MJ, Fenyö D, Hiltke T, Ketchum KA, Kinsinger C, Kuhn E, Liebler DC, Liu T, Loss M, MacCoss MJ, Qian WJ, Rivers R, Rodland KD, Ruggles KV, Scott MG, Smith RD, Thomas S, Townsend RR, Whiteley G, Wu C, Zhang H, Zhang Z, Rodriguez H, Paulovich AG.

Methods Mol Biol. 2016;1410:223-36. doi: 10.1007/978-1-4939-3524-6_13.


Integrated micro-biochemical approach for phytoremediation of cadmium and lead contaminated soils using Gladiolus grandiflorus L cut flower.

Mani D, Kumar C, Patel NK.

Ecotoxicol Environ Saf. 2016 Feb;124:435-446. doi: 10.1016/j.ecoenv.2015.11.016. Epub 2015 Nov 28.


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