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Items: 44

1.

The human gallbladder microbiome is related to the physiological state and the biliary metabolic profile.

Molinero N, Ruiz L, Milani C, Gutiérrez-Díaz I, Sánchez B, Mangifesta M, Segura J, Cambero I, Campelo AB, García-Bernardo CM, Cabrera A, Rodríguez JI, González S, Rodríguez JM, Ventura M, Delgado S, Margolles A.

Microbiome. 2019 Jul 4;7(1):100. doi: 10.1186/s40168-019-0712-8.

2.

Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution.

Duranti S, Lugli GA, Milani C, James K, Mancabelli L, Turroni F, Alessandri G, Mangifesta M, Mancino W, Ossiprandi MC, Iori A, Rota C, Gargano G, Bernasconi S, Di Pierro F, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Jun 6. doi: 10.1111/1462-2920.14705. [Epub ahead of print]

PMID:
31172651
3.

Colonization of the human gut by bovine bacteria present in Parmesan cheese.

Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F.

Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w.

4.

Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.

Lugli GA, Mangifesta M, Mancabelli L, Milani C, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Int J Food Microbiol. 2019 Apr 2;294:1-9. doi: 10.1016/j.ijfoodmicro.2019.01.011. Epub 2019 Jan 21.

PMID:
30711887
5.

Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Lugli GA, Mancino W, Milani C, Duranti S, Mancabelli L, Napoli S, Mangifesta M, Viappiani A, Anzalone R, Longhi G, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e02806-18. doi: 10.1128/AEM.02806-18. Print 2019 Apr 1.

PMID:
30709821
6.

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Apr;21(4):1331-1343. doi: 10.1111/1462-2920.14540. Epub 2019 Mar 18.

PMID:
30680877
7.

Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer.

Mangifesta M, Mancabelli L, Milani C, Gaiani F, de'Angelis N, de'Angelis GL, van Sinderen D, Ventura M, Turroni F.

Sci Rep. 2018 Sep 18;8(1):13974. doi: 10.1038/s41598-018-32413-2.

8.

Bifidobacterium bifidum PRL2010 alleviates intestinal ischemia/reperfusion injury.

Duranti S, Vivo V, Zini I, Milani C, Mangifesta M, Anzalone R, Mancabelli L, Viappiani A, Cantoni AM, Barocelli E, van Sinderen D, Bertoni S, Turroni F.

PLoS One. 2018 Aug 30;13(8):e0202670. doi: 10.1371/journal.pone.0202670. eCollection 2018.

9.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

10.

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N.

Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005.

11.

Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.

Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00706-18. doi: 10.1128/AEM.00706-18. Print 2018 Jul 15.

12.

Understanding the gut-kidney axis in nephrolithiasis: an analysis of the gut microbiota composition and functionality of stone formers.

Ticinesi A, Milani C, Guerra A, Allegri F, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Dodi R, Dall'Asta M, Del Rio D, Ventura M, Meschi T.

Gut. 2018 Dec;67(12):2097-2106. doi: 10.1136/gutjnl-2017-315734. Epub 2018 Apr 28.

PMID:
29705728
13.

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.

PMID:
29395537
14.

Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02249-17. doi: 10.1128/AEM.02249-17. Print 2018 Feb 15.

15.

Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses.

Ferrario C, Alessandri G, Mancabelli L, Gering E, Mangifesta M, Milani C, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, Hiyashi R, Mackie R, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Nov;19(11):4771-4783. doi: 10.1111/1462-2920.13943. Epub 2017 Oct 13.

PMID:
28967204
16.

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers.

Ferrario C, Statello R, Carnevali L, Mancabelli L, Milani C, Mangifesta M, Duranti S, Lugli GA, Jimenez B, Lodge S, Viappiani A, Alessandri G, Dall'Asta M, Del Rio D, Sgoifo A, van Sinderen D, Ventura M, Turroni F.

Front Microbiol. 2017 Sep 12;8:1749. doi: 10.3389/fmicb.2017.01749. eCollection 2017.

17.

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients.

Ticinesi A, Milani C, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Ventura M, Meschi T.

Sci Rep. 2017 Sep 11;7(1):11102. doi: 10.1038/s41598-017-10734-y.

18.

Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).

Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3987-3995. doi: 10.1099/ijsem.0.002243. Epub 2017 Sep 12.

PMID:
28893355
19.

Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses.

Mancabelli L, Milani C, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ticinesi A, Nouvenne A, Meschi T, van Sinderen D, Ventura M.

Sci Rep. 2017 Aug 29;7(1):9879. doi: 10.1038/s41598-017-10663-w.

20.

Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, James K, Duranti S, Turroni F, Ferrario C, Ossiprandi MC, van Sinderen D, Ventura M.

ISME J. 2017 Dec;11(12):2834-2847. doi: 10.1038/ismej.2017.138. Epub 2017 Aug 22.

21.

Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.

Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiří K, van Sinderen D, Ventura M.

BMC Genomics. 2017 Aug 1;18(1):568. doi: 10.1186/s12864-017-3955-4.

22.

The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, Mancino W, Viappiani A, Faccini A, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01295-17. doi: 10.1128/AEM.01295-17. Print 2017 Oct 1.

23.

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission.

Duranti S, Lugli GA, Mancabelli L, Armanini F, Turroni F, James K, Ferretti P, Gorfer V, Ferrario C, Milani C, Mangifesta M, Anzalone R, Zolfo M, Viappiani A, Pasolli E, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Fedi S, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Soffiati M, Tateo S, Pedrotti A, Segata N, van Sinderen D, Ventura M.

Microbiome. 2017 Jun 26;5(1):66. doi: 10.1186/s40168-017-0282-6.

24.

Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens.

Ferrario C, Lugli GA, Ossiprandi MC, Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Alessandri G, van Sinderen D, Ventura M.

Int J Food Microbiol. 2017 Sep 1;256:20-29. doi: 10.1016/j.ijfoodmicro.2017.05.001. Epub 2017 May 3.

PMID:
28578266
25.

Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.

Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02894-16. doi: 10.1128/AEM.02894-16. Print 2017 Feb 1.

26.

Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers.

Duranti S, Gaiani F, Mancabelli L, Milani C, Grandi A, Bolchi A, Santoni A, Lugli GA, Ferrario C, Mangifesta M, Viappiani A, Bertoni S, Vivo V, Serafini F, Barbaro MR, Fugazza A, Barbara G, Gioiosa L, Palanza P, Cantoni AM, de'Angelis GL, Barocelli E, de'Angelis N, van Sinderen D, Ventura M, Turroni F.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw191. doi: 10.1093/femsec/fiw191. Epub 2016 Sep 7.

PMID:
27604252
27.

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study.

Milani C, Ticinesi A, Gerritsen J, Nouvenne A, Lugli GA, Mancabelli L, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Lauretani F, De Vos W, van Sinderen D, Meschi T, Ventura M.

Sci Rep. 2016 May 11;6:25945. doi: 10.1038/srep25945.

28.

The human gut microbiota and its interactive connections to diet.

Milani C, Ferrario C, Turroni F, Duranti S, Mangifesta M, van Sinderen D, Ventura M.

J Hum Nutr Diet. 2016 Oct;29(5):539-46. doi: 10.1111/jhn.12371. Epub 2016 May 10.

PMID:
27161433
29.

Insights into the biodiversity of the gut microbiota of broiler chickens.

Mancabelli L, Ferrario C, Milani C, Mangifesta M, Turroni F, Duranti S, Lugli GA, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Dec;18(12):4727-4738. doi: 10.1111/1462-2920.13363. Epub 2016 Jun 27.

PMID:
27129897
30.

Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis.

Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sánchez B, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2016 Apr 1;6:23971. doi: 10.1038/srep23971.

31.

Modulation of the eps-ome transcription of bifidobacteria through simulation of human intestinal environment.

Ferrario C, Milani C, Mancabelli L, Lugli GA, Duranti S, Mangifesta M, Viappiani A, Turroni F, Margolles A, Ruas-Madiedo P, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw056. doi: 10.1093/femsec/fiw056. Epub 2016 Mar 8.

PMID:
26960391
32.

Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach.

Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Viappiani A, Lugli GA, Ferrario C, Gioiosa L, Ferrarini A, Li J, Palanza P, Delledonne M, van Sinderen D, Ventura M.

ISME J. 2016 Jul;10(7):1656-68. doi: 10.1038/ismej.2015.236. Epub 2016 Feb 9.

33.

Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.

Ferrario C, Duranti S, Milani C, Mancabelli L, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Front Microbiol. 2015 Nov 24;6:1331. doi: 10.3389/fmicb.2015.01331. eCollection 2015.

34.

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.

Milani C, Lugli GA, Duranti S, Turroni F, Mancabelli L, Ferrario C, Mangifesta M, Hevia A, Viappiani A, Scholz M, Arioli S, Sanchez B, Lane J, Ward DV, Hickey R, Mora D, Segata N, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2015 Oct 28;5:15782. doi: 10.1038/srep15782.

35.

Exploring Vertical Transmission of Bifidobacteria from Mother to Child.

Milani C, Mancabelli L, Lugli GA, Duranti S, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Ferretti P, Gorfer V, Tett A, Segata N, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2015 Oct;81(20):7078-87. doi: 10.1128/AEM.02037-15. Epub 2015 Jul 31.

36.

A genome-based identification approach for members of the genus Bifidobacterium.

Ferrario C, Milani C, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Sinderen Dv, Ventura M.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiv009. doi: 10.1093/femsec/fiv009. Epub 2015 Jan 27.

PMID:
25764568
37.

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum.

Duranti S, Milani C, Lugli GA, Turroni F, Mancabelli L, Sanchez B, Ferrario C, Viappiani A, Mangifesta M, Mancino W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Environ Microbiol. 2015 Jul;17(7):2515-31. doi: 10.1111/1462-2920.12743. Epub 2015 Feb 14.

PMID:
25523018
38.

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol.

Milani C, Lugli GA, Turroni F, Mancabelli L, Duranti S, Viappiani A, Mangifesta M, Segata N, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2014 Nov;90(2):493-503. doi: 10.1111/1574-6941.12410. Epub 2014 Sep 8.

39.

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.

Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2014 Oct;80(20):6383-94. doi: 10.1128/AEM.02004-14. Epub 2014 Aug 8.

40.

Genomic encyclopedia of type strains of the genus Bifidobacterium.

Milani C, Lugli GA, Duranti S, Turroni F, Bottacini F, Mangifesta M, Sanchez B, Viappiani A, Mancabelli L, Taminiau B, Delcenserie V, Barrangou R, Margolles A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2014 Oct;80(20):6290-302. doi: 10.1128/AEM.02308-14. Epub 2014 Aug 1.

41.

Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.

Duranti S, Turroni F, Lugli GA, Milani C, Viappiani A, Mangifesta M, Gioiosa L, Palanza P, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2014 Oct;80(19):6080-90. doi: 10.1128/AEM.01993-14. Epub 2014 Jul 25.

42.

Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions.

Turroni F, Serafini F, Mangifesta M, Arioli S, Mora D, van Sinderen D, Ventura M.

FEMS Microbiol Lett. 2014 Aug;357(1):23-33. doi: 10.1111/1574-6968.12509. Epub 2014 Jul 7.

43.

The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon.

Lugli GA, Duranti S, Milani C, Turroni F, Viappiani A, Mangifesta M, van Sinderen D, Ventura M.

Genome Announc. 2014 Feb 20;2(1). pii: e00048-14. doi: 10.1128/genomeA.00048-14.

44.

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions.

Turroni F, Serafini F, Foroni E, Duranti S, O'Connell Motherway M, Taverniti V, Mangifesta M, Milani C, Viappiani A, Roversi T, Sánchez B, Santoni A, Gioiosa L, Ferrarini A, Delledonne M, Margolles A, Piazza L, Palanza P, Bolchi A, Guglielmetti S, van Sinderen D, Ventura M.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11151-6. doi: 10.1073/pnas.1303897110. Epub 2013 Jun 17.

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