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Items: 23

1.

Multi-Omics Strategies Uncover Host-Pathogen Interactions.

Khan MM, Ernst O, Manes NP, Oyler BL, Fraser IDC, Goodlett DR, Nita-Lazar A.

ACS Infect Dis. 2019 Apr 12;5(4):493-505. doi: 10.1021/acsinfecdis.9b00080. Epub 2019 Mar 25. Review.

PMID:
30857388
2.

Host-pathogen dynamics through targeted secretome analysis of stimulated macrophages.

Khan MM, Koppenol-Raab M, Kuriakose M, Manes NP, Goodlett DR, Nita-Lazar A.

J Proteomics. 2018 Oct 30;189:34-38. doi: 10.1016/j.jprot.2018.03.016. Epub 2018 Mar 20.

3.

Application of targeted mass spectrometry in bottom-up proteomics for systems biology research.

Manes NP, Nita-Lazar A.

J Proteomics. 2018 Oct 30;189:75-90. doi: 10.1016/j.jprot.2018.02.008. Epub 2018 Feb 13. Review.

4.

Multi-omics Comparative Analysis Reveals Multiple Layers of Host Signaling Pathway Regulation by the Gut Microbiota.

Manes NP, Shulzhenko N, Nuccio AG, Azeem S, Morgun A, Nita-Lazar A.

mSystems. 2017 Oct 24;2(5). pii: e00107-17. doi: 10.1128/mSystems.00107-17. eCollection 2017 Sep-Oct.

5.

Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses.

Koppenol-Raab M, Sjoelund V, Manes NP, Gottschalk RA, Dutta B, Benet ZL, Fraser ID, Nita-Lazar A.

Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S172-S186. doi: 10.1074/mcp.M116.064261. Epub 2017 Feb 24.

6.

The development of SRM assays is transforming proteomics research.

Manes NP, Nita-Lazar A.

Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201600366. Epub 2016 Nov 30.

PMID:
27718317
7.

Selected Reaction Monitoring Mass Spectrometry for Absolute Protein Quantification.

Manes NP, Mann JM, Nita-Lazar A.

J Vis Exp. 2015 Aug 17;(102):e52959. doi: 10.3791/52959.

8.

Targeted Proteomics-Driven Computational Modeling of Macrophage S1P Chemosensing.

Manes NP, Angermann BR, Koppenol-Raab M, An E, Sjoelund VH, Sun J, Ishii M, Germain RN, Meier-Schellersheim M, Nita-Lazar A.

Mol Cell Proteomics. 2015 Oct;14(10):2661-81. doi: 10.1074/mcp.M115.048918. Epub 2015 Jul 21.

9.

Characterization of functional reprogramming during osteoclast development using quantitative proteomics and mRNA profiling.

An E, Narayanan M, Manes NP, Nita-Lazar A.

Mol Cell Proteomics. 2014 Oct;13(10):2687-704. doi: 10.1074/mcp.M113.034371. Epub 2014 Jul 20.

10.

Bacillus anthracis interacts with plasmin(ogen) to evade C3b-dependent innate immunity.

Chung MC, Tonry JH, Narayanan A, Manes NP, Mackie RS, Gutting B, Mukherjee DV, Popova TG, Kashanchi F, Bailey CL, Popov SG.

PLoS One. 2011 Mar 25;6(3):e18119. doi: 10.1371/journal.pone.0018119.

11.

Discovery of mouse spleen signaling responses to anthrax using label-free quantitative phosphoproteomics via mass spectrometry.

Manes NP, Dong L, Zhou W, Du X, Reghu N, Kool AC, Choi D, Bailey CL, Petricoin EF 3rd, Liotta LA, Popov SG.

Mol Cell Proteomics. 2011 Mar;10(3):M110.000927. doi: 10.1074/mcp.M110.000927. Epub 2010 Dec 28.

12.

Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.

Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD.

J Proteome Res. 2011 Mar 4;10(3):923-31. doi: 10.1021/pr100848a. Epub 2011 Feb 16.

13.

Characterization of macaque pulmonary fluid proteome during monkeypox infection: dynamics of host response.

Brown JN, Estep RD, Lopez-Ferrer D, Brewer HM, Clauss TR, Manes NP, O'Connor M, Li H, Adkins JN, Wong SW, Smith RD.

Mol Cell Proteomics. 2010 Dec;9(12):2760-71. doi: 10.1074/mcp.M110.001875. Epub 2010 Aug 24.

14.

Performing comparative peptidomics analyses of Salmonella from different growth conditions.

Adkins JN, Mottaz H, Metz TO, Ansong C, Manes NP, Smith RD, Heffron F.

Methods Mol Biol. 2010;615:13-27. doi: 10.1007/978-1-60761-535-4_2.

PMID:
20013197
15.

Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems.

Mottaz-Brewer HM, Norbeck AD, Adkins JN, Manes NP, Ansong C, Shi L, Rikihisa Y, Kikuchi T, Wong SW, Estep RD, Heffron F, Pasa-Tolic L, Smith RD.

J Biomol Tech. 2008 Dec;19(5):285-95.

16.

Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella.

Rodland KD, Adkins JN, Ansong C, Chowdhury S, Manes NP, Shi L, Yoon H, Smith RD, Heffron F.

Future Microbiol. 2008 Dec;3(6):625-34. doi: 10.2217/17460913.3.6.625. Review.

17.

A computational strategy to analyze label-free temporal bottom-up proteomics data.

Du X, Callister SJ, Manes NP, Adkins JN, Alexandridis RA, Zeng X, Roh JH, Smith WE, Donohue TJ, Kaplan S, Smith RD, Lipton MS.

J Proteome Res. 2008 Jul;7(7):2595-604. doi: 10.1021/pr0704837. Epub 2008 Apr 29.

18.

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.

Du X, Yang F, Manes NP, Stenoien DL, Monroe ME, Adkins JN, States DJ, Purvine SO, Camp DG 2nd, Smith RD.

J Proteome Res. 2008 Jun;7(6):2195-203. doi: 10.1021/pr070510t. Epub 2008 Apr 19.

19.

Comparative proteomics of human monkeypox and vaccinia intracellular mature and extracellular enveloped virions.

Manes NP, Estep RD, Mottaz HM, Moore RJ, Clauss TR, Monroe ME, Du X, Adkins JN, Wong SW, Smith RD.

J Proteome Res. 2008 Mar;7(3):960-8. doi: 10.1021/pr070432+. Epub 2008 Jan 19. Erratum in: J Proteome Res. 2013 Jan 4;12(1):546.

20.

Targeted protein degradation by Salmonella under phagosome-mimicking culture conditions investigated using comparative peptidomics.

Manes NP, Gustin JK, Rue J, Mottaz HM, Purvine SO, Norbeck AD, Monroe ME, Zimmer JS, Metz TO, Adkins JN, Smith RD, Heffron F.

Mol Cell Proteomics. 2007 Apr;6(4):717-27. Epub 2007 Jan 16.

21.

Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages.

Shi L, Adkins JN, Coleman JR, Schepmoes AA, Dohnkova A, Mottaz HM, Norbeck AD, Purvine SO, Manes NP, Smallwood HS, Wang H, Forbes J, Gros P, Uzzau S, Rodland KD, Heffron F, Smith RD, Squier TC.

J Biol Chem. 2006 Sep 29;281(39):29131-40. Epub 2006 Aug 7.

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