Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 29

1.

Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection.

Ebrahimi-Nik H, Michaux J, Corwin WL, Keller GL, Shcheglova T, Pak H, Coukos G, Baker BM, Mandoiu II, Bassani-Sternberg M, Srivastava PK.

JCI Insight. 2019 Jun 20;5. pii: 129152. doi: 10.1172/jci.insight.129152.

2.

CD91 on dendritic cells governs immunosurveillance of nascent, emerging tumors.

Sedlacek AL, Younker TP, Zhou YJ, Borghesi L, Shcheglova T, Mandoiu II, Binder RJ.

JCI Insight. 2019 Apr 4;4(7). pii: 127239. doi: 10.1172/jci.insight.127239. eCollection 2019 Apr 4.

3.

Locality Sensitive Imputation for Single Cell RNA-Seq Data.

Moussa M, Măndoiu II.

J Comput Biol. 2019 Feb 20. doi: 10.1089/cmb.2018.0236. [Epub ahead of print]

PMID:
30785309
4.

Single cell RNA-seq data clustering using TF-IDF based methods.

Moussa M, Măndoiu II.

BMC Genomics. 2018 Aug 13;19(Suppl 6):569. doi: 10.1186/s12864-018-4922-4.

5.

CD11c+ MHCIIlo GM-CSF-bone marrow-derived dendritic cells act as antigen donor cells and as antigen presenting cells in neoepitope-elicited tumor immunity against a mouse fibrosarcoma.

Ebrahimi-Nik H, Corwin WL, Shcheglova T, Das Mohapatra A, Mandoiu II, Srivastava PK.

Cancer Immunol Immunother. 2018 Sep;67(9):1449-1459. doi: 10.1007/s00262-018-2202-4. Epub 2018 Jul 20.

6.

Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.

Mandric I, Temate-Tiagueu Y, Shcheglova T, Al Seesi S, Zelikovsky A, Mandoiu II.

Bioinformatics. 2017 Oct 15;33(20):3302-3304. doi: 10.1093/bioinformatics/btx365.

PMID:
28605502
7.

Tumor Control Index as a new tool to assess tumor growth in experimental animals.

Corwin WL, Ebrahimi-Nik H, Floyd SM, Tavousi P, Mandoiu II, Srivastava PK.

J Immunol Methods. 2017 Jun;445:71-76. doi: 10.1016/j.jim.2017.03.013. Epub 2017 Mar 20.

8.

Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development.

Karunakaran DK, Al Seesi S, Banday AR, Baumgartner M, Olthof A, Lemoine C, Măndoiu II, Kanadia RN.

BMC Genomics. 2016 Aug 31;17 Suppl 5:495. doi: 10.1186/s12864-016-2822-z.

9.

Metabolic pathway predictions for metabolomics: a molecular structure matching approach.

Hamdalla MA, Rajasekaran S, Grant DF, Măndoiu II.

J Chem Inf Model. 2015 Mar 23;55(3):709-18. doi: 10.1021/ci500517v. Epub 2015 Feb 24.

PMID:
25668446
10.

Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates.

Al Seesi S, Tiagueu YT, Zelikovsky A, Măndoiu II.

BMC Genomics. 2014;15 Suppl 8:S2. doi: 10.1186/1471-2164-15-S8-S2. Epub 2014 Nov 13.

11.

Feature selection and classifier performance on diverse bio- logical datasets.

Hemphill E, Lindsay J, Lee C, Măndoiu II, Nelson CE.

BMC Bioinformatics. 2014;15 Suppl 13:S4. doi: 10.1186/1471-2105-15-S13-S4. Epub 2014 Nov 13.

12.

Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity.

Duan F, Duitama J, Al Seesi S, Ayres CM, Corcelli SA, Pawashe AP, Blanchard T, McMahon D, Sidney J, Sette A, Baker BM, Mandoiu II, Srivastava PK.

J Exp Med. 2014 Oct 20;211(11):2231-48. doi: 10.1084/jem.20141308. Epub 2014 Sep 22.

13.

Guest editors' introduction to the special section on bioinformatics research and applications.

Mandoiu II, Wang J, Zelikovsky A.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov-Dec;10(6):1345-6. No abstract available.

PMID:
24567956
14.

Neuraminidase subtyping of avian influenza viruses with PrimerHunter-designed primers and quadruplicate primer pools.

Huang Y, Khan MI, Măndoiu I.

PLoS One. 2013 Nov 29;8(11):e81842. doi: 10.1371/journal.pone.0081842. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/0c03da4e-c4f6-4992-8c5b-bdabdd3bb08f. Khan, Mazhar [corrected to Khan, Mazhar I]; Măndoiu, Ion I [corrected to Măndŏiu, Ion].

15.

In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics.

Menikarachchi LC, Hill DW, Hamdalla MA, Mandoiu II, Grant DF.

J Chem Inf Model. 2013 Sep 23;53(9):2483-92. doi: 10.1021/ci400368v. Epub 2013 Sep 12.

16.

BioSM: metabolomics tool for identifying endogenous mammalian biochemical structures in chemical structure space.

Hamdalla MA, Mandoiu II, Hill DW, Rajasekaran S, Grant DF.

J Chem Inf Model. 2013 Mar 25;53(3):601-12. doi: 10.1021/ci300512q. Epub 2013 Feb 27.

17.

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.

Duitama J, Srivastava PK, Măndoiu II.

BMC Genomics. 2012 Apr 12;13 Suppl 2:S6. doi: 10.1186/1471-2164-13-S2-S6.

18.

Inferring ethnicity from mitochondrial DNA sequence.

Lee C, Măndoiu II, Nelson CE.

BMC Proc. 2011 May 28;5 Suppl 2:S11. doi: 10.1186/1753-6561-5-S2-S11.

19.

Estimation of alternative splicing isoform frequencies from RNA-Seq data.

Nicolae M, Mangul S, Măndoiu II, Zelikovsky A.

Algorithms Mol Biol. 2011 Apr 19;6(1):9. doi: 10.1186/1748-7188-6-9.

20.

Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.

Duitama J, Kennedy J, Dinakar S, Hernández Y, Wu Y, Măndoiu II.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S53. doi: 10.1186/1471-2105-12-S1-S53.

21.

Identification of mammalian orthologs using local synteny.

Jun J, Mandoiu II, Nelson CE.

BMC Genomics. 2009 Dec 23;10:630. doi: 10.1186/1471-2164-10-630.

22.

PrimerHunter: a primer design tool for PCR-based virus subtype identification.

Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE.

Nucleic Acids Res. 2009 May;37(8):2483-92. doi: 10.1093/nar/gkp073. Epub 2009 Mar 5.

23.

Guest editors' introduction to the special section on bioinformatics research and applications.

Mandoiu II, Pan Y, Zelikovsky A.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):321-2. No abstract available.

PMID:
18683323
24.

Highly scalable genotype phasing by entropy minimization.

Gusev A, Măndoiu II, Paşaniuc B.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun;5(2):252-61. doi: 10.1109/TCBB.2007.70223.

PMID:
18451434
25.

Highly scalable algorithms for robust string barcoding.

Dasgupta B, Konwar KM, Mandoiu II, Shvartsman AA.

Int J Bioinform Res Appl. 2005;1(2):145-61.

PMID:
18048126
26.

High-throughput SNP genotyping by SBE/SBH.

Măndoiu II, Prăjescu C.

IEEE Trans Nanobioscience. 2007 Mar;6(1):28-35.

PMID:
17393847
27.

Exact and approximation algorithms for DNA tag set design.

Măndoiu II, Trincă D.

J Comput Biol. 2006 Apr;13(3):732-44.

PMID:
16706722
28.

DNA-BAR: distinguisher selection for DNA barcoding.

DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA.

Bioinformatics. 2005 Aug 15;21(16):3424-6. Epub 2005 Jun 16.

PMID:
15961439
29.

Scalable heuristics for design of DNA probe arrays.

Kahng AB, Măndoiu II, Pevzner PA, Reda S, Zelikovsky AZ.

J Comput Biol. 2004;11(2-3):429-47.

PMID:
15285900

Supplemental Content

Loading ...
Support Center