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Items: 1 to 50 of 69

1.

Multiple transcription factors co-regulate the Mycobacterium tuberculosis adaptation response to vitamin C.

Nandi M, Sikri K, Chaudhary N, Mande SC, Sharma RD, Tyagi JS.

BMC Genomics. 2019 Nov 21;20(1):887. doi: 10.1186/s12864-019-6190-3.

2.

Rewiring of Metabolic Network in Mycobacterium tuberculosis During Adaptation to Different Stresses.

Rizvi A, Shankar A, Chatterjee A, More TH, Bose T, Dutta A, Balakrishnan K, Madugulla L, Rapole S, Mande SS, Banerjee S, Mande SC.

Front Microbiol. 2019 Oct 29;10:2417. doi: 10.3389/fmicb.2019.02417. eCollection 2019.

3.

16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India.

Bayal N, Nagpal S, Haque MM, Patole MS, Valluri V, Suryavanshi R, Mande SS, Mande SC.

Sci Data. 2019 Oct 22;6(1):225. doi: 10.1038/s41597-019-0232-1.

4.

Spatially conserved motifs in complement control protein domains determine functionality in regulators of complement activation-family proteins.

Ojha H, Ghosh P, Singh Panwar H, Shende R, Gondane A, Mande SC, Sahu A.

Commun Biol. 2019 Aug 5;2:290. doi: 10.1038/s42003-019-0529-9. eCollection 2019.

5.

Metabolomics Studies To Decipher Stress Responses in Mycobacterium smegmatis Point to a Putative Pathway of Methylated Amine Biosynthesis.

Rizvi A, Yousf S, Balakrishnan K, Dubey HK, Mande SC, Chugh J, Banerjee S.

J Bacteriol. 2019 Jul 10;201(15). pii: e00707-18. doi: 10.1128/JB.00707-18. Print 2019 Aug 1.

PMID:
31138627
6.

Structural basis of hypoxic gene regulation by the Rv0081 transcription factor of Mycobacterium tuberculosis.

Kumar A, Phulera S, Rizvi A, Sonawane PJ, Panwar HS, Banerjee S, Sahu A, Mande SC.

FEBS Lett. 2019 May;593(9):982-995. doi: 10.1002/1873-3468.13375. Epub 2019 Apr 26.

PMID:
30941756
7.

A Glimpse Into the Structure and Function of Atypical Type I Chaperonins.

Ansari MY, Mande SC.

Front Mol Biosci. 2018 Apr 11;5:31. doi: 10.3389/fmolb.2018.00031. eCollection 2018. Review.

8.

Ser/Thr protein kinase PrkC-mediated regulation of GroEL is critical for biofilm formation in Bacillus anthracis.

Arora G, Sajid A, Virmani R, Singhal A, Kumar CMS, Dhasmana N, Khanna T, Maji A, Misra R, Molle V, Becher D, Gerth U, Mande SC, Singh Y.

NPJ Biofilms Microbiomes. 2017 Mar 7;3:7. doi: 10.1038/s41522-017-0015-4. eCollection 2017.

10.

Towards understanding the biological function of the unusual chaperonin Cpn60.1 (GroEL1) of Mycobacterium tuberculosis.

Sharma A, Rustad T, Mahajan G, Kumar A, Rao KV, Banerjee S, Sherman DR, Mande SC.

Tuberculosis (Edinb). 2016 Mar;97:137-46. doi: 10.1016/j.tube.2015.11.003. Epub 2015 Dec 12.

PMID:
26822628
11.

From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach.

Mahajan G, Mande SC.

PLoS One. 2015 Nov 12;10(11):e0142147. doi: 10.1371/journal.pone.0142147. eCollection 2015.

12.

GroEL2 of Mycobacterium tuberculosis Reveals the Importance of Structural Pliability in Chaperonin Function.

Chilukoti N, Kumar CM, Mande SC.

J Bacteriol. 2015 Nov 9;198(3):486-97. doi: 10.1128/JB.00844-15. Print 2016 Feb 1.

13.

Multiple chaperonins in bacteria--novel functions and non-canonical behaviors.

Kumar CM, Mande SC, Mahajan G.

Cell Stress Chaperones. 2015 Jul;20(4):555-74. doi: 10.1007/s12192-015-0598-8. Epub 2015 May 20. Review.

14.

Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions.

Hegde SR, Pal K, Mande SC.

BMC Syst Biol. 2014 Feb 27;8:26. doi: 10.1186/1752-0509-8-26.

15.

The crystal structure of Mycobacterium tuberculosis NrdH at 0.87 Ã… suggests a possible mode of its activity.

Phulera S, Mande SC.

Biochemistry. 2013 Jun 11;52(23):4056-65. doi: 10.1021/bi400191z. Epub 2013 May 28.

PMID:
23675692
16.

Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets.

Permina EA, Medvedeva YA, Baeck PM, Hegde SR, Mande SC, Makeev VJ.

J Biomol Struct Dyn. 2013;31(1):115-24. doi: 10.1080/07391102.2012.691368. Epub 2012 Jul 18.

PMID:
22803819
17.

Understanding communication signals during mycobacterial latency through predicted genome-wide protein interactions and boolean modeling.

Hegde SR, Rajasingh H, Das C, Mande SS, Mande SC.

PLoS One. 2012;7(3):e33893. doi: 10.1371/journal.pone.0033893. Epub 2012 Mar 20.

18.

Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network.

Jailkhani N, Ravichandran S, Hegde SR, Siddiqui Z, Mande SC, Rao KV.

Genome Res. 2011 Dec;21(12):2067-81. doi: 10.1101/gr.116145.110. Epub 2011 Aug 24.

19.

Structural biology of Mycobacterium tuberculosis proteins: the Indian efforts.

Arora A, Chandra NR, Das A, Gopal B, Mande SC, Prakash B, Ramachandran R, Sankaranarayanan R, Sekar K, Suguna K, Tyagi AK, Vijayan M.

Tuberculosis (Edinb). 2011 Sep;91(5):456-68. doi: 10.1016/j.tube.2011.03.004. Epub 2011 Apr 22. Review.

PMID:
21514889
20.

Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein.

Kumar P, Joshi DC, Akif M, Akhter Y, Hasnain SE, Mande SC.

Biophys J. 2010 Jan 20;98(2):305-14. doi: 10.1016/j.bpj.2009.10.016.

21.

The PPE18 of Mycobacterium tuberculosis interacts with TLR2 and activates IL-10 induction in macrophage.

Nair S, Ramaswamy PA, Ghosh S, Joshi DC, Pathak N, Siddiqui I, Sharma P, Hasnain SE, Mande SC, Mukhopadhyay S.

J Immunol. 2009 Nov 15;183(10):6269-81. doi: 10.4049/jimmunol.0901367. Epub 2009 Oct 30.

22.

Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages.

Manimaran P, Hegde SR, Mande SC.

Mol Biosyst. 2009 Dec;5(12):1936-42. doi: 10.1039/B905264j. Epub 2009 Aug 7.

PMID:
19763329
23.

Facilitated oligomerization of mycobacterial GroEL: evidence for phosphorylation-mediated oligomerization.

Kumar CM, Khare G, Srikanth CV, Tyagi AK, Sardesai AA, Mande SC.

J Bacteriol. 2009 Nov;191(21):6525-38. doi: 10.1128/JB.00652-09. Epub 2009 Aug 28.

24.

A novel nucleoid-associated protein of Mycobacterium tuberculosis is a sequence homolog of GroEL.

Basu D, Khare G, Singh S, Tyagi A, Khosla S, Mande SC.

Nucleic Acids Res. 2009 Aug;37(15):4944-54. doi: 10.1093/nar/gkp502. Epub 2009 Jun 15.

25.

Dynamic changes in protein functional linkage networks revealed by integration with gene expression data.

Hegde SR, Manimaran P, Mande SC.

PLoS Comput Biol. 2008 Nov;4(11):e1000237. doi: 10.1371/journal.pcbi.1000237. Epub 2008 Nov 28.

26.

Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein.

Kumar P, Issac B, Dodson EJ, Turkenburg JP, Mande SC.

J Mol Biol. 2008 Nov 14;383(3):482-93. doi: 10.1016/j.jmb.2008.08.067. Epub 2008 Sep 4.

PMID:
18793646
27.

Functional studies of multiple thioredoxins from Mycobacterium tuberculosis.

Akif M, Khare G, Tyagi AK, Mande SC, Sardesai AA.

J Bacteriol. 2008 Nov;190(21):7087-95. doi: 10.1128/JB.00159-08. Epub 2008 Aug 22.

28.

Mycobacterium tuberculosis heat shock protein 60 modulates immune response to PPD by manipulating the surface expression of TLR2 on macrophages.

Khan N, Alam K, Mande SC, Valluri VL, Hasnain SE, Mukhopadhyay S.

Cell Microbiol. 2008 Aug;10(8):1711-22. doi: 10.1111/j.1462-5822.2008.01161.x. Epub 2008 Apr 17.

PMID:
18419772
29.
30.

PAR-3D: a server to predict protein active site residues.

Goyal K, Mohanty D, Mande SC.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W503-5. Epub 2007 May 3.

31.
32.

Multiple gene duplication and rapid evolution in the groEL gene: functional implications.

Goyal K, Qamra R, Mande SC.

J Mol Evol. 2006 Dec;63(6):781-7. Epub 2006 Nov 10.

PMID:
17103057
33.

Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis CRP/FNR family transcription regulator.

Akif M, Akhter Y, Hasnain SE, Mande SC.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Sep 1;62(Pt 9):873-5. Epub 2006 Aug 11.

34.
35.

Crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis chorismate mutase.

Qamra R, Prakash P, Aruna B, Hasnain SE, Mande SC.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 May 1;61(Pt 5):473-5. Epub 2005 Apr 9.

36.

Cation-mediated interplay of loops in chaperonin-10.

Vijayakrishnan S, Qamra R, Verma CS, Sen R, Mande SC.

J Biomol Struct Dyn. 2006 Feb;23(4):365-76.

PMID:
16363873
37.

Conformational flexibility of Mycobacterium tuberculosis thioredoxin reductase: crystal structure and normal-mode analysis.

Akif M, Suhre K, Verma C, Mande SC.

Acta Crystallogr D Biol Crystallogr. 2005 Dec;61(Pt 12):1603-11. Epub 2005 Nov 19.

PMID:
16301794
38.

The unusual chaperonins of Mycobacterium tuberculosis.

Qamra R, Mande SC, Coates AR, Henderson B.

Tuberculosis (Edinb). 2005 Sep-Nov;85(5-6):385-94. Epub 2005 Oct 25. Review.

PMID:
16253564
39.

Effect of alcohols on protein hydration: crystallographic analysis of hen egg-white lysozyme in the presence of alcohols.

Deshpande A, Nimsadkar S, Mande SC.

Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):1005-8. Epub 2005 Jun 24.

PMID:
15983424
40.
42.

Expression, purification, crystallization and preliminary X-ray crystallographic studies of Mycobacterium tuberculosis thioredoxin reductase.

Akif M, Chauhan R, Mande SC.

Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):777-9. Epub 2004 Mar 23.

PMID:
15039584
43.

Human recombinant resistin protein displays a tendency to aggregate by forming intermolecular disulfide linkages.

Aruna B, Ghosh S, Singh AK, Mande SC, Srinivas V, Chauhan R, Ehtesham NZ.

Biochemistry. 2003 Sep 16;42(36):10554-9.

PMID:
12962478
44.

Identification of conserved residue patterns in small beta-barrel proteins.

Qamra R, Taneja B, Mande SC.

Protein Eng. 2002 Dec;15(12):967-77.

PMID:
12601136
45.

The TB structural genomics consortium: providing a structural foundation for drug discovery.

Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, Baker EN, Arcus VL, Leys D, McLean KJ, Munro AW, Berendzen J, Sharma V, Park MS, Eisenberg D, Sacchettini J, Alber T, Rupp B, Jacobs W Jr, Terwilliger TC.

Curr Drug Targets Infect Disord. 2002 Jun;2(2):121-41. Review.

PMID:
12462144
46.
47.
48.
49.

Structure of Mycobacterium tuberculosis chaperonin-10 at 3.5 A resolution.

Taneja B, Mande SC.

Acta Crystallogr D Biol Crystallogr. 2002 Feb;58(Pt 2):260-6. Epub 2002 Jan 24.

PMID:
11807250
50.

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