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Items: 1 to 50 of 168

1.

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.

Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, Takashima M, Manabe RI, Čadež N, Libkind D, Rosa CA, DeVirgilio J, Hulfachor AB, Groenewald M, Kurtzman CP, Hittinger CT, Rokas A.

Cell. 2018 Nov 2. pii: S0092-8674(18)31332-1. doi: 10.1016/j.cell.2018.10.023. [Epub ahead of print]

PMID:
30415838
2.

Multiple losses of photosynthesis and convergent reductive genome evolution in the colourless green algae Prototheca.

Suzuki S, Endoh R, Manabe RI, Ohkuma M, Hirakawa Y.

Sci Rep. 2018 Jan 17;8(1):940. doi: 10.1038/s41598-017-18378-8.

3.

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.

Takashima M, Sriswasdi S, Manabe RI, Ohkuma M, Sugita T, Iwasaki W.

Yeast. 2018 Jan;35(1):99-111. doi: 10.1002/yea.3284. Epub 2017 Dec 6.

PMID:
29027707
4.

Electrocatalytic synthesis of ammonia by surface proton hopping.

Manabe R, Nakatsubo H, Gondo A, Murakami K, Ogo S, Tsuneki H, Ikeda M, Ishikawa A, Nakai H, Sekine Y.

Chem Sci. 2017 Aug 1;8(8):5434-5439. doi: 10.1039/c7sc00840f. Epub 2017 Jun 5.

5.

Draft Genome Sequences of the Oomycete Pilasporangium apinafurcum Strains JCM 30513 and JCM 30514, Formerly Classified as Pythium apinafurcum.

Uzuhashi S, Endoh R, Manabe RI, Ohkuma M.

Genome Announc. 2017 Aug 31;5(35). pii: e00899-17. doi: 10.1128/genomeA.00899-17.

6.

FANTOM5 CAGE profiles of human and mouse samples.

Noguchi S, Arakawa T, Fukuda S, Furuno M, Hasegawa A, Hori F, Ishikawa-Kato S, Kaida K, Kaiho A, Kanamori-Katayama M, Kawashima T, Kojima M, Kubosaki A, Manabe RI, Murata M, Nagao-Sato S, Nakazato K, Ninomiya N, Nishiyori-Sueki H, Noma S, Saijyo E, Saka A, Sakai M, Simon C, Suzuki N, Tagami M, Watanabe S, Yoshida S, Arner P, Axton RA, Babina M, Baillie JK, Barnett TC, Beckhouse AG, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Carlisle AJ, Clevers HC, Davis CA, Detmar M, Dohi T, Edge ASB, Edinger M, Ehrlund A, Ekwall K, Endoh M, Enomoto H, Eslami A, Fagiolini M, Fairbairn L, Farach-Carson MC, Faulkner GJ, Ferrai C, Fisher ME, Forrester LM, Fujita R, Furusawa JI, Geijtenbeek TB, Gingeras T, Goldowitz D, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Hasegawa Y, Herlyn M, Heutink P, Hitchens KJ, Hume DA, Ikawa T, Ishizu Y, Kai C, Kawamoto H, Kawamura YI, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klein S, Klinken SP, Knox AJ, Kojima S, Koseki H, Koyasu S, Lee W, Lennartsson A, Mackay-Sim A, Mejhert N, Mizuno Y, Morikawa H, Morimoto M, Moro K, Morris KJ, Motohashi H, Mummery CL, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nozaki T, Ogishima S, Ohkura N, Ohno H, Ohshima M, Okada-Hatakeyama M, Okazaki Y, Orlando V, Ovchinnikov DA, Passier R, Patrikakis M, Pombo A, Pradhan-Bhatt S, Qin XY, Rehli M, Rizzu P, Roy S, Sajantila A, Sakaguchi S, Sato H, Satoh H, Savvi S, Saxena A, Schmidl C, Schneider C, Schulze-Tanzil GG, Schwegmann A, Sheng G, Shin JW, Sugiyama D, Sugiyama T, Summers KM, Takahashi N, Takai J, Tanaka H, Tatsukawa H, Tomoiu A, Toyoda H, van de Wetering M, van den Berg LM, Verardo R, Vijayan D, Wells CA, Winteringham LN, Wolvetang E, Yamaguchi Y, Yamamoto M, Yanagi-Mizuochi C, Yoneda M, Yonekura Y, Zhang PG, Zucchelli S, Abugessaisa I, Arner E, Harshbarger J, Kondo A, Lassmann T, Lizio M, Sahin S, Sengstag T, Severin J, Shimoji H, Suzuki M, Suzuki H, Kawai J, Kondo N, Itoh M, Daub CO, Kasukawa T, Kawaji H, Carninci P, Forrest ARR, Hayashizaki Y.

Sci Data. 2017 Aug 29;4:170112. doi: 10.1038/sdata.2017.112.

7.

Surface Protonics Promotes Catalysis.

Manabe R, Okada S, Inagaki R, Oshima K, Ogo S, Sekine Y.

Sci Rep. 2016 Dec 1;6:38007. doi: 10.1038/srep38007.

8.

Draft Genome Sequence of Raffaelea quercivora JCM 11526, a Japanese Oak Wilt Pathogen Associated with the Platypodid Beetle, Platypus quercivorus.

Masuya H, Manabe R, Ohkuma M, Endoh R.

Genome Announc. 2016 Jul 28;4(4). pii: e00755-16. doi: 10.1128/genomeA.00755-16.

9.

Global deceleration of gene evolution following recent genome hybridizations in fungi.

Sriswasdi S, Takashima M, Manabe R, Ohkuma M, Sugita T, Iwasaki W.

Genome Res. 2016 Aug;26(8):1081-90. doi: 10.1101/gr.205948.116. Epub 2016 Jul 20.

10.

Draft Genome Sequence of the Causative Antigen of Summer-Type Hypersensitivity Pneumonitis, Trichosporon domesticum JCM 9580.

Cho O, Ichikawa T, Kurakado S, Takashima M, Manabe R, Ohkuma M, Sugita T.

Genome Announc. 2016 Jul 7;4(4). pii: e00651-16. doi: 10.1128/genomeA.00651-16.

11.

Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort Marchantia polymorpha.

Inoue K, Nishihama R, Kataoka H, Hosaka M, Manabe R, Nomoto M, Tada Y, Ishizaki K, Kohchi T.

Plant Cell. 2016 Jun;28(6):1406-21. doi: 10.1105/tpc.15.01063. Epub 2016 Jun 1.

12.

Influence of Omalizumab on Allergen-Specific IgE in Patients with Adult Asthma.

Mizuma H, Tanaka A, Uchida Y, Fujiwara A, Manabe R, Furukawa H, Kuwahara N, Fukuda Y, Kimura T, Jinno M, Ohta S, Yamamoto M, Matsukura S, Adachi M, Sagara H.

Int Arch Allergy Immunol. 2015;168(3):165-72. doi: 10.1159/000442668. Epub 2016 Jan 21. Erratum in: Int Arch Allergy Immunol. 2015;168(3):218. Matsukara, Satoshi [corrected to Matsukura, Satoshi].

13.

Tor Signaling Regulates Transcription of Amino Acid Permeases through a GATA Transcription Factor Gaf1 in Fission Yeast.

Ma Y, Ma N, Liu Q, Qi Y, Manabe R, Furuyashiki T.

PLoS One. 2015 Dec 21;10(12):e0144677. doi: 10.1371/journal.pone.0144677. eCollection 2015.

14.

Selection of Orthologous Genes for Construction of a Highly Resolved Phylogenetic Tree and Clarification of the Phylogeny of Trichosporonales Species.

Takashima M, Manabe R, Iwasaki W, Ohyama A, Ohkuma M, Sugita T.

PLoS One. 2015 Aug 4;10(8):e0131217. doi: 10.1371/journal.pone.0131217. eCollection 2015. Erratum in: PLoS One. 2015;10(9):e0138637.

15.

Association between specific IgE to Staphylococcus aureus enterotoxins A and B and asthma control.

Tanaka A, Suzuki S, Ohta S, Manabe R, Furukawa H, Kuwahara N, Fukuda Y, Kimura T, Jinno M, Hirai K, Miyata Y, Yamaguchi M, Homma T, Watanabe Y, Yamamoto M, Yokoe T, Sagara H.

Ann Allergy Asthma Immunol. 2015 Sep;115(3):191-197.e2. doi: 10.1016/j.anai.2015.06.017. Epub 2015 Jul 21.

PMID:
26208759
16.

Light-sensitive vertical migration of the Japanese eel Anguilla japonica revealed by real-time tracking and its utilization for geolocation.

Chow S, Okazaki M, Watanabe T, Segawa K, Yamamoto T, Kurogi H, Tanaka H, Ai K, Kawai M, Yamamoto S, Mochioka N, Manabe R, Miyake Y.

PLoS One. 2015 Apr 15;10(4):e0121801. doi: 10.1371/journal.pone.0121801. eCollection 2015.

17.

[Hypereosinophilic syndrome accompanied with digital gangrene: efficacy of therapeutic angiogenesis by autologous bone marrow mononuclear cells transplantaion].

Azuma N, Matoba S, Nishioka A, Muramoto M, Ueda E, Hatakeda N, Manabe R, Kou M, Iwamura Y, Nozaki Y, Matsui K, Sano H.

Nihon Rinsho Meneki Gakkai Kaishi. 2014;37(2):101-10. Japanese.

18.

Integrating reductive and synthetic approaches in biology using man-made cell-like compartments.

Aoki W, Saito M, Manabe R, Mori H, Yamaguchi Y, Tamiya E.

Sci Rep. 2014 Apr 17;4:4722. doi: 10.1038/srep04722.

19.

A promoter-level mammalian expression atlas.

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, Bertin N, Jørgensen M, Dimont E, Arner E, Schmidl C, Schaefer U, Medvedeva YA, Plessy C, Vitezic M, Severin J, Semple C, Ishizu Y, Young RS, Francescatto M, Alam I, Albanese D, Altschuler GM, Arakawa T, Archer JA, Arner P, Babina M, Rennie S, Balwierz PJ, Beckhouse AG, Pradhan-Bhatt S, Blake JA, Blumenthal A, Bodega B, Bonetti A, Briggs J, Brombacher F, Burroughs AM, Califano A, Cannistraci CV, Carbajo D, Chen Y, Chierici M, Ciani Y, Clevers HC, Dalla E, Davis CA, Detmar M, Diehl AD, Dohi T, Drabløs F, Edge AS, Edinger M, Ekwall K, Endoh M, Enomoto H, Fagiolini M, Fairbairn L, Fang H, Farach-Carson MC, Faulkner GJ, Favorov AV, Fisher ME, Frith MC, Fujita R, Fukuda S, Furlanello C, Furino M, Furusawa J, Geijtenbeek TB, Gibson AP, Gingeras T, Goldowitz D, Gough J, Guhl S, Guler R, Gustincich S, Ha TJ, Hamaguchi M, Hara M, Harbers M, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto T, Herlyn M, Hitchens KJ, Ho Sui SJ, Hofmann OM, Hoof I, Hori F, Huminiecki L, Iida K, Ikawa T, Jankovic BR, Jia H, Joshi A, Jurman G, Kaczkowski B, Kai C, Kaida K, Kaiho A, Kajiyama K, Kanamori-Katayama M, Kasianov AS, Kasukawa T, Katayama S, Kato S, Kawaguchi S, Kawamoto H, Kawamura YI, Kawashima T, Kempfle JS, Kenna TJ, Kere J, Khachigian LM, Kitamura T, Klinken SP, Knox AJ, Kojima M, Kojima S, Kondo N, Koseki H, Koyasu S, Krampitz S, Kubosaki A, Kwon AT, Laros JF, Lee W, Lennartsson A, Li K, Lilje B, Lipovich L, Mackay-Sim A, Manabe R, Mar JC, Marchand B, Mathelier A, Mejhert N, Meynert A, Mizuno Y, de Lima Morais DA, Morikawa H, Morimoto M, Moro K, Motakis E, Motohashi H, Mummery CL, Murata M, Nagao-Sato S, Nakachi Y, Nakahara F, Nakamura T, Nakamura Y, Nakazato K, van Nimwegen E, Ninomiya N, Nishiyori H, Noma S, Noma S, Noazaki T, Ogishima S, Ohkura N, Ohimiya H, Ohno H, Ohshima M, Okada-Hatakeyama M, Okazaki Y, Orlando V, Ovchinnikov DA, Pain A, Passier R, Patrikakis M, Persson H, Piazza S, Prendergast JG, Rackham OJ, Ramilowski JA, Rashid M, Ravasi T, Rizzu P, Roncador M, Roy S, Rye MB, Saijyo E, Sajantila A, Saka A, Sakaguchi S, Sakai M, Sato H, Savvi S, Saxena A, Schneider C, Schultes EA, Schulze-Tanzil GG, Schwegmann A, Sengstag T, Sheng G, Shimoji H, Shimoni Y, Shin JW, Simon C, Sugiyama D, Sugiyama T, Suzuki M, Suzuki N, Swoboda RK, 't Hoen PA, Tagami M, Takahashi N, Takai J, Tanaka H, Tatsukawa H, Tatum Z, Thompson M, Toyodo H, Toyoda T, Valen E, van de Wetering M, van den Berg LM, Verado R, Vijayan D, Vorontsov IE, Wasserman WW, Watanabe S, Wells CA, Winteringham LN, Wolvetang E, Wood EJ, Yamaguchi Y, Yamamoto M, Yoneda M, Yonekura Y, Yoshida S, Zabierowski SE, Zhang PG, Zhao X, Zucchelli S, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.

Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182.

20.

Effects of switching from calcium carbonate to lanthanum carbonate on bone mineral metabolism in hemodialysis patients.

Manabe R, Fukami K, Ando R, Sakai K, Kusumoto T, Hazama T, Adachi T, Kaida Y, Nakayama Y, Ueda S, Kohno K, Wada Y, Yamagishi S, Okuda S.

Ther Apher Dial. 2013 Apr;17 Suppl 1:35-40. doi: 10.1111/1744-9987.12037. Erratum in: Ther Apher Dial. 2013 Aug;17(4):466.

PMID:
23586511
21.

Evidence for a positive association between serum carnitine and free testosterone levels in uremic men with hemodialysis.

Sakai K, Fukami K, Yamagishi S, Kaida Y, Adachi T, Ando R, Manabe R, Otsuka A, Sugi K, Ueda S, Okuda S.

Rejuvenation Res. 2013 Jun;16(3):200-5. doi: 10.1089/rej.2012.1399.

PMID:
23488553
22.

Membrane-type 1 matrix metalloproteinase regulates fibronectin assembly to promote cell motility.

Takino T, Nagao R, Manabe R, Domoto T, Sekiguchi K, Sato H.

FEBS Lett. 2011 Nov 4;585(21):3378-84. doi: 10.1016/j.febslet.2011.09.039. Epub 2011 Oct 5.

23.

ADAMTSL6β protein rescues fibrillin-1 microfibril disorder in a Marfan syndrome mouse model through the promotion of fibrillin-1 assembly.

Saito M, Kurokawa M, Oda M, Oshima M, Tsutsui K, Kosaka K, Nakao K, Ogawa M, Manabe R, Suda N, Ganjargal G, Hada Y, Noguchi T, Teranaka T, Sekiguchi K, Yoneda T, Tsuji T.

J Biol Chem. 2011 Nov 4;286(44):38602-13. doi: 10.1074/jbc.M111.243451. Epub 2011 Aug 31.

24.

Dramatic effect of pop-up satellite tags on eel swimming.

Burgerhout E, Manabe R, Brittijn SA, Aoyama J, Tsukamoto K, van den Thillart GE.

Naturwissenschaften. 2011 Jul;98(7):631-4. doi: 10.1007/s00114-011-0805-0. Epub 2011 May 19.

25.

miRNA profiling of bilateral rat hippocampal CA3 by deep sequencing.

Shinohara Y, Yahagi K, Kawano M, Nishiyori H, Kawazu C, Suzuki N, Manabe R, Hirase H.

Biochem Biophys Res Commun. 2011 Jun 3;409(2):293-8. doi: 10.1016/j.bbrc.2011.05.004. Epub 2011 May 14.

PMID:
21575607
26.

Identification and characterization of nCLP2, a novel C1q family protein expressed in the central nervous system.

Shimono C, Manabe R, Yamada T, Fukuda S, Kawai J, Furutani Y, Tsutsui K, Ikenaka K, Hayashizaki Y, Sekiguchi K.

J Biochem. 2010 Apr;147(4):565-79. doi: 10.1093/jb/mvp203. Epub 2009 Dec 8.

PMID:
19996152
27.

ADAMTSL-6 is a novel extracellular matrix protein that binds to fibrillin-1 and promotes fibrillin-1 fibril formation.

Tsutsui K, Manabe R, Yamada T, Nakano I, Oguri Y, Keene DR, Sengle G, Sakai LY, Sekiguchi K.

J Biol Chem. 2010 Feb 12;285(7):4870-82. doi: 10.1074/jbc.M109.076919. Epub 2009 Nov 23.

28.

Molecular basis of the recognition of nephronectin by integrin alpha8beta1.

Sato Y, Uemura T, Morimitsu K, Sato-Nishiuchi R, Manabe R, Takagi J, Yamada M, Sekiguchi K.

J Biol Chem. 2009 May 22;284(21):14524-36. doi: 10.1074/jbc.M900200200. Epub 2009 Apr 2.

29.

[Questionnaire survey of workers in specific buildings regarding multiple chemical sensitivity].

Manabe R, Kunugita N, Katoh T, Kuroda Y, Akiyama Y, Yamano Y, Uchiyama I, Arashidani K.

Nihon Eiseigaku Zasshi. 2008 Jul;63(4):717-23. Japanese.

30.

Transcriptome-based systematic identification of extracellular matrix proteins.

Manabe R, Tsutsui K, Yamada T, Kimura M, Nakano I, Shimono C, Sanzen N, Furutani Y, Fukuda T, Oguri Y, Shimamoto K, Kiyozumi D, Sato Y, Sado Y, Senoo H, Yamashina S, Fukuda S, Kawai J, Sugiura N, Kimata K, Hayashizaki Y, Sekiguchi K.

Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):12849-54. doi: 10.1073/pnas.0803640105. Epub 2008 Aug 29.

31.

[Investigation of air pollution in a shopping center and employees' personal exposure level].

Manabe R, Kunugita N, Katoh T, Kuroda Y, Akiyama Y, Yamano Y, Uchiyama I, Arashidani K.

Nihon Eiseigaku Zasshi. 2008 Jan;63(1):20-8. Japanese.

32.

[Investigation of the condition of asbestos in large-scale buildings in Kitakyushu].

Manabe R, Kunugita N, Katoh T, Kuroda Y, Akiyama Y, Yamano Y, Uchiyama I, Arashidani K.

J UOEH. 2007 Dec 1;29(4):449-55. Japanese.

PMID:
18170965
33.

Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity.

Furutani Y, Manabe R, Tsutsui K, Yamada T, Sugimoto N, Fukuda S, Kawai J, Sugiura N, Kimata K, Hayashizaki Y, Sekiguchi K.

Biochem J. 2005 Aug 1;389(Pt 3):675-84.

34.

Fluorescence imaging of mobility shifts: an expression cloning method for identification of cell signaling targets.

Mandell JW, Manabe R, Horwitz AF, Baumgart JP.

Lab Invest. 2002 Dec;82(12):1631-6.

PMID:
12480913
35.
36.

Mice lacking the EDB segment of fibronectin develop normally but exhibit reduced cell growth and fibronectin matrix assembly in vitro.

Fukuda T, Yoshida N, Kataoka Y, Manabe R, Mizuno-Horikawa Y, Sato M, Kuriyama K, Yasui N, Sekiguchi K.

Cancer Res. 2002 Oct 1;62(19):5603-10.

37.

GIT1 functions in a motile, multi-molecular signaling complex that regulates protrusive activity and cell migration.

Manabe R, Kovalenko M, Webb DJ, Horwitz AR.

J Cell Sci. 2002 Apr 1;115(Pt 7):1497-510.

38.

Histogenesis of gastric foveolar metaplasia following duodenal ulcer: a definite reparative lineage of Brunner's gland.

Kushima R, Manabe R, Hattori T, Borchard F.

Histopathology. 1999 Jul;35(1):38-43.

PMID:
10383712
39.
40.

[Laws related to organ transplantation and corneal transplantation].

Manabe R.

Nippon Ganka Gakkai Zasshi. 1998 Sep;102(9):602-3. Japanese. No abstract available.

PMID:
9867700
41.

Modulation of cell-adhesive activity of fibronectin by the alternatively spliced EDA segment.

Manabe R, Ohe N, Maeda T, Fukuda T, Sekiguchi K.

J Cell Biol. 1997 Oct 6;139(1):295-307.

42.

[Analysis of microsatellite regions and DNA ploidy pattern in signet ring cell carcinomas of the stomach].

Kimura T, Sato H, Manabe R, Konishi H, Kushima R, Sugihara H, Hattori T, Kodama T, Kashima K.

Gan To Kagaku Ryoho. 1997 Jul;24 Suppl 2:273-8. Japanese.

PMID:
9263515
43.

[Eye bank in Japan, past-present-future].

Manabe R.

Nihon Koshu Eisei Zasshi. 1996 May;43(5):351-3. Japanese. No abstract available.

PMID:
8704267
44.

[Medical treatment in corneal diseases].

Manabe R.

Nippon Ganka Gakkai Zasshi. 1995 Nov;99(11):1201-2. Japanese. No abstract available.

PMID:
8533646
45.

[Papuloerythroderma associated with gastric cancer; report of a case].

Sunami K, Taniguchi H, Moriyama T, Mikami H, Manabe R, Imura M, Shigemi K.

Nihon Shokakibyo Gakkai Zasshi. 1995 Sep;92(9):1285-8. Japanese. No abstract available.

PMID:
7474485
46.

Construction and investigation of a hard-sphere crystal-melt interface by a molecular dynamics simulation.

Mori A, Manabe R, Nishioka K.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 May;51(5):R3831-R3833. No abstract available.

PMID:
9963252
47.

[Tissue of origin of herpes simplex virus type 1 reactivated in tear film].

Shimomura Y, Watanabe H, Kiritoshi A, Inoue Y, Manabe R.

Nippon Ganka Gakkai Zasshi. 1994 May;98(5):419-22. Japanese.

PMID:
8197909
48.
49.

Distribution of epidermal growth factor in rat ocular and periocular tissues.

Watanabe H, Ohashi Y, Kinoshita S, Manabe R, Ohshiden K.

Graefes Arch Clin Exp Ophthalmol. 1993 Apr;231(4):228-32.

PMID:
8486305
50.

Herpes simplex virus latency in human cornea.

Shimomura Y, Mori Y, Inoue Y, Kiritooshi A, Ohashi Y, Manabe R.

Jpn J Ophthalmol. 1993;37(3):318-24.

PMID:
8295371

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