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Items: 47

1.

Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.

Gangiredla J, Mammel MK, Lacher DW, Tartera C, Jackson SA, Patel IR, Elkins CA, Mukherjee A.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01399-18. doi: 10.1128/MRA.01399-18. eCollection 2018 Nov.

2.

Draft Genome Sequences of the Escherichia coli Reference (ECOR) Collection.

Patel IR, Gangiredla J, Mammel MK, Lampel KA, Elkins CA, Lacher DW.

Microbiol Resour Announc. 2018 Oct 11;7(14). pii: e01133-18. doi: 10.1128/MRA.01133-18. eCollection 2018 Oct.

3.

Global transcriptomic response of Listeria monocytogenes during growth on cantaloupe slices.

Kang J, Burall L, Mammel MK, Datta AR.

Food Microbiol. 2019 Feb;77:192-201. doi: 10.1016/j.fm.2018.09.012. Epub 2018 Sep 15.

PMID:
30297050
4.

A Vegetable Fermentation Facility Hosts Distinct Microbiomes Reflecting the Production Environment.

Einson JE, Rani A, You X, Rodriguez AA, Randell CL, Barnaba T, Mammel MK, Kotewicz ML, Elkins CA, Sela DA.

Appl Environ Microbiol. 2018 Oct 30;84(22). pii: e01680-18. doi: 10.1128/AEM.01680-18. Print 2018 Nov 15.

PMID:
30171008
5.

Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Bagi L, Baranzoni GM, Fratamico PM, Roberts EL, DebROY C, Lindsey RL, V Stoneburg D, Martin H, Smith P, Strockbine NA, Elkins CA, Scheutz F, Feng PCH.

J Food Prot. 2018 Aug;81(8):1275-1282. doi: 10.4315/0362-028X.JFP-18-052.

6.

Fifty-Six Draft Genome Sequences of 10 Lactobacillus Species from 22 Commercial Dietary Supplements.

Gangiredla J, Barnaba TJ, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C.

Genome Announc. 2018 Jun 28;6(26). pii: e00621-18. doi: 10.1128/genomeA.00621-18.

7.

Draft Genome Sequences of Bifidobacterium Strains Isolated from Dietary Supplements and Cultured Food Products.

Barnaba TJ, Gangiredla J, Mammel MK, Lacher DW, Elkins CA, Lampel KA, Whitehouse CA, Tartera C.

Genome Announc. 2018 Jun 28;6(26). pii: e00610-18. doi: 10.1128/genomeA.00610-18.

8.

Salmonella Activation of STAT3 Signaling by SarA Effector Promotes Intracellular Replication and Production of IL-10.

Jaslow SL, Gibbs KD, Fricke WF, Wang L, Pittman KJ, Mammel MK, Thaden JT, Fowler VG Jr, Hammer GE, Elfenbein JR, Ko DC.

Cell Rep. 2018 Jun 19;23(12):3525-3536. doi: 10.1016/j.celrep.2018.05.072.

9.

Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2018 May 3;6(18). pii: e00271-18. doi: 10.1128/genomeA.00271-18.

10.

Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity.

Gangiredla J, Mammel MK, Barnaba TJ, Tartera C, Gebru ST, Patel IR, Leonard SR, Kotewicz ML, Lampel KA, Elkins CA, Lacher DW.

Genome Announc. 2017 Dec 14;5(50). pii: e01321-17. doi: 10.1128/genomeA.01321-17.

11.

A Comprehensive Evaluation of the Genetic Relatedness of Listeria monocytogenes Serotype 4b Variant Strains.

Burall LS, Grim CJ, Mammel MK, Datta AR.

Front Public Health. 2017 Sep 13;5:241. doi: 10.3389/fpubh.2017.00241. eCollection 2017.

12.

Draft Genome Sequences of Escherichia coli O104 Strains of Bovine and Human Origin.

Shridhar PB, Patel IR, Gangiredla J, Mammel MK, Noll L, Shi X, Bai J, Elkins CA, Strockbine N, Nagaraja TG.

Genome Announc. 2017 Aug 17;5(33). pii: e00630-17. doi: 10.1128/genomeA.00630-17.

13.

Use of a Pan-Genomic DNA Microarray in Determination of the Phylogenetic Relatedness among Cronobacter spp. and Its Use as a Data Mining Tool to Understand Cronobacter Biology.

Tall BD, Gangiredla J, Grim CJ, Patel IR, Jackson SA, Mammel MK, Kothary MH, Sathyamoorthy V, Carter L, Fanning S, Iversen C, Pagotto F, Stephan R, Lehner A, Farber J, Yan QQ, Gopinath GR.

Microarrays (Basel). 2017 Mar 4;6(1). pii: E6. doi: 10.3390/microarrays6010006. Review.

14.

Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing.

Leonard SR, Mammel MK, Lacher DW, Elkins CA.

PLoS One. 2016 Dec 8;11(12):e0167870. doi: 10.1371/journal.pone.0167870. eCollection 2016.

15.

Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.

Rusconi B, Sanjar F, Koenig SS, Mammel MK, Tarr PI, Eppinger M.

Front Microbiol. 2016 Jun 30;7:985. doi: 10.3389/fmicb.2016.00985. eCollection 2016.

16.

Towards next-generation sequencing analytics for foodborne RNA viruses: Examining the effect of RNA input quantity and viral RNA purity.

Yang Z, Leonard SR, Mammel MK, Elkins CA, Kulka M.

J Virol Methods. 2016 Oct;236:221-230. doi: 10.1016/j.jviromet.2016.07.013. Epub 2016 Jul 18.

PMID:
27435336
17.

Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing.

Patro JN, Ramachandran P, Barnaba T, Mammel MK, Lewis JL, Elkins CA.

mSphere. 2016 Mar 30;1(2). pii: e00057-16. doi: 10.1128/mSphere.00057-16. eCollection 2016 Mar-Apr.

18.

Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid.

Leonard SR, Mammel MK, Rasko DA, Lacher DW.

Appl Environ Microbiol. 2016 Jun 30;82(14):4309-4319. doi: 10.1128/AEM.01129-16. Print 2016 Jul 15.

19.

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Jackson SA, Lampel KA, Elkins CA.

Appl Environ Microbiol. 2016 May 16;82(11):3384-3394. doi: 10.1128/AEM.04077-15. Print 2016 Jun 1.

20.

Optimizing a custom tiling microarray for low input detection and identification of unamplified virus targets.

Yu C, Wales SQ, Mammel MK, Hida K, Kulka M.

J Virol Methods. 2016 Aug;234:54-64. doi: 10.1016/j.jviromet.2016.03.013. Epub 2016 Mar 28.

PMID:
27033182
21.

Whole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis Outbreaks.

Burall LS, Grim CJ, Mammel MK, Datta AR.

PLoS One. 2016 Mar 7;11(3):e0150797. doi: 10.1371/journal.pone.0150797. eCollection 2016.

22.

Complete Genome Sequence of Human Norovirus GII.4_2006b, a Variant of Minerva 2006.

Yang Z, Mammel MK, Kulka M.

Genome Announc. 2016 Jan 28;4(1). pii: e01648-15. doi: 10.1128/genomeA.01648-15.

23.

Application of metagenomic sequencing to food safety: detection of Shiga Toxin-producing Escherichia coli on fresh bagged spinach.

Leonard SR, Mammel MK, Lacher DW, Elkins CA.

Appl Environ Microbiol. 2015 Dec;81(23):8183-91. doi: 10.1128/AEM.02601-15. Epub 2015 Sep 18.

24.

Genetic and resistance phenotypic subtyping of Salmonella Saintpaul isolates from various food sources and humans: Phylogenetic concordance in combinatory analyses.

Hayford AE, Brown EW, Zhao S, Mammel MK, Gangiredla J, Abbott JW, Friedman SL, Ayers SL, Lewis JL, Lacher DW, McDermott P, Elkins CA.

Infect Genet Evol. 2015 Dec;36:92-107. doi: 10.1016/j.meegid.2015.08.022. Epub 2015 Aug 20.

PMID:
26299886
25.

Characterization of the pathogenome and phylogenomic classification of enteropathogenic Escherichia coli of the O157:non-H7 serotypes.

Sanjar F, Rusconi B, Hazen TH, Koenig SS, Mammel MK, Feng PC, Rasko DA, Eppinger M.

Pathog Dis. 2015 Jul;73(5). pii: ftv033. doi: 10.1093/femspd/ftv033. Epub 2015 May 10.

26.

Development and utility of the FDA 'GutProbe' DNA microarray for identification, genotyping and metagenomic analysis of commercially available probiotics.

Patro JN, Ramachandran P, Lewis JL, Mammel MK, Barnaba T, Pfeiler EA, Elkins CA.

J Appl Microbiol. 2015 Jun;118(6):1478-88. doi: 10.1111/jam.12795. Epub 2015 Apr 9.

28.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M.

Genome Announc. 2014 Jan 9;2(1). pii: e01120-13. doi: 10.1128/genomeA.01120-13.

29.

Genome Sequence of an Enterobacter helveticus Strain, 1159/04 (LMG 23733), Isolated from Fruit Powder.

Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Tall BD, Fanning S, Stephan R.

Genome Announc. 2013 Dec 12;1(6). pii: e01038-13. doi: 10.1128/genomeA.01038-13.

30.

Genome Sequence of Enterobacter turicensis Strain 610/05 (LMG 23731), Isolated from Fruit Powder.

Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BD.

Genome Announc. 2013 Dec 26;1(6). pii: e00996-13. doi: 10.1128/genomeA.00996-13.

31.

Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder.

Gopinath GR, Grim CJ, Tall BD, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Stephan R.

Genome Announc. 2013 Dec 5;1(6). pii: e00991-13. doi: 10.1128/genomeA.00991-13.

32.

The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, Tall BD.

Food Microbiol. 2013 Jun;34(2):303-18. doi: 10.1016/j.fm.2013.01.001. Epub 2013 Jan 23.

PMID:
23541197
33.

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.

Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J.

Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12.

34.

High density microarray analysis reveals new insights into genetic footprints of Listeria monocytogenes strains involved in listeriosis outbreaks.

Laksanalamai P, Jackson SA, Mammel MK, Datta AR.

PLoS One. 2012;7(3):e32896. doi: 10.1371/journal.pone.0032896. Epub 2012 Mar 21.

35.

Genomic anatomy of Escherichia coli O157:H7 outbreaks.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20142-7. doi: 10.1073/pnas.1107176108. Epub 2011 Nov 30.

36.

Single nucleotide polymorphism (SNP)-based differentiation of Shigella isolates by pyrosequencing.

Hayford AE, Mammel MK, Lacher DW, Brown EW.

Infect Genet Evol. 2011 Oct;11(7):1761-8. doi: 10.1016/j.meegid.2011.07.015. Epub 2011 Aug 4.

PMID:
21839856
37.

Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution.

Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, Leclerc JE, Ravel J, Cebula TA.

J Bacteriol. 2011 Jul;193(14):3556-68. doi: 10.1128/JB.00297-11. Epub 2011 May 20.

38.

Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Appl Environ Microbiol. 2011 May;77(9):2916-25. doi: 10.1128/AEM.02554-10. Epub 2011 Mar 18.

39.

Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry.

Fricke WF, McDermott PF, Mammel MK, Zhao S, Johnson TJ, Rasko DA, Fedorka-Cray PJ, Pedroso A, Whichard JM, Leclerc JE, White DG, Cebula TA, Ravel J.

Appl Environ Microbiol. 2009 Sep;75(18):5963-71. doi: 10.1128/AEM.00786-09. Epub 2009 Jul 31.

40.

Comparative genomics of the IncA/C multidrug resistance plasmid family.

Fricke WF, Welch TJ, McDermott PF, Mammel MK, LeClerc JE, White DG, Cebula TA, Ravel J.

J Bacteriol. 2009 Aug;191(15):4750-7. doi: 10.1128/JB.00189-09. Epub 2009 May 29.

41.

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak.

Kotewicz ML, Mammel MK, LeClerc JE, Cebula TA.

Microbiology. 2008 Nov;154(Pt 11):3518-28. doi: 10.1099/mic.0.2008/019026-0.

PMID:
18957604
42.

Altered utilization of N-acetyl-D-galactosamine by Escherichia coli O157:H7 from the 2006 spinach outbreak.

Mukherjee A, Mammel MK, LeClerc JE, Cebula TA.

J Bacteriol. 2008 Mar;190(5):1710-7. Epub 2007 Dec 21.

43.

Multiple antimicrobial resistance in plague: an emerging public health risk.

Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, Carniel E, Ravel J.

PLoS One. 2007 Mar 21;2(3):e309.

44.

Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays.

Jackson SA, Mammel MK, Patel IR, Mays T, Albert TJ, LeClerc JE, Cebula TA.

Forensic Sci Int. 2007 May 24;168(2-3):183-99. Epub 2006 Aug 28.

PMID:
16934953
45.

Molecular applications for identifying microbial pathogens in the post-9/11 era.

Cebula TA, Brown EW, Jackson SA, Mammel MK, Mukherjee A, LeClerc JE.

Expert Rev Mol Diagn. 2005 May;5(3):431-45. Review.

PMID:
15934819
46.

Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens.

Brown EW, Mammel MK, LeClerc JE, Cebula TA.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15676-81. Epub 2003 Dec 11.

47.

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