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Items: 46

1.

Resuscitation of Dormant "Non-culturable" Mycobacterium tuberculosis Is Characterized by Immediate Transcriptional Burst.

Salina EG, Grigorov AS, Bychenko OS, Skvortsova YV, Mamedov IZ, Azhikina TL, Kaprelyants AS.

Front Cell Infect Microbiol. 2019 Jul 30;9:272. doi: 10.3389/fcimb.2019.00272. eCollection 2019.

2.

[A Pipeline for the Error-free Identification of Somatic Alu Insertions in High-throughput Sequencing Data].

Nugmanov GA, Komkov AY, Saliutina MV, Minervina AA, Lebedev YB, Mamedov IZ.

Mol Biol (Mosk). 2019 Jan-Feb;53(1):154-165. doi: 10.1134/S0026898419010117. Russian.

3.

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins.

Pogorelyy MV, Minervina AA, Touzel MP, Sycheva AL, Komech EA, Kovalenko EI, Karganova GG, Egorov ES, Komkov AY, Chudakov DM, Mamedov IZ, Mora T, Walczak AM, Lebedev YB.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12704-12709. doi: 10.1073/pnas.1809642115. Epub 2018 Nov 20.

4.

An advanced enrichment method for rare somatic retroelement insertions sequencing.

Komkov AY, Minervina AA, Nugmanov GA, Saliutina MV, Khodosevich KV, Lebedev YB, Mamedov IZ.

Mob DNA. 2018 Oct 31;9:31. doi: 10.1186/s13100-018-0136-1. eCollection 2018.

5.

Characterization of the T-cell Repertoire after Autologous HSCT in Patients with Ankylosing Spondylitis.

Komech EA, Zvyagin IV, Pogorelyy MV, Mamedov IZ, Fedorenko DA, Lebedev YB.

Acta Naturae. 2018 Apr-Jun;10(2):48-57.

6.

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging.

Egorov ES, Kasatskaya SA, Zubov VN, Izraelson M, Nakonechnaya TO, Staroverov DB, Angius A, Cucca F, Mamedov IZ, Rosati E, Franke A, Shugay M, Pogorelyy MV, Chudakov DM, Britanova OV.

Front Immunol. 2018 Jul 24;9:1618. doi: 10.3389/fimmu.2018.01618. eCollection 2018.

7.

Method for identification of condition-associated public antigen receptor sequences.

Pogorelyy MV, Minervina AA, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

Elife. 2018 Mar 13;7. pii: e33050. doi: 10.7554/eLife.33050.

8.

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

Komech EA, Pogorelyy MV, Egorov ES, Britanova OV, Rebrikov DV, Bochkova AG, Shmidt EI, Shostak NA, Shugay M, Lukyanov S, Mamedov IZ, Lebedev YB, Chudakov DM, Zvyagin IV.

Rheumatology (Oxford). 2018 Jun 1;57(6):1097-1104. doi: 10.1093/rheumatology/kex517.

PMID:
29481668
9.

Quantitative profiling reveals minor changes of T cell receptor repertoire in response to subunit inactivated influenza vaccine.

Sycheva AL, Pogorelyy MV, Komech EA, Minervina AA, Zvyagin IV, Staroverov DB, Chudakov DM, Lebedev YB, Mamedov IZ.

Vaccine. 2018 Mar 14;36(12):1599-1605. doi: 10.1016/j.vaccine.2018.02.027. Epub 2018 Feb 15.

PMID:
29454515
10.

Comparative analysis of murine T-cell receptor repertoires.

Izraelson M, Nakonechnaya TO, Moltedo B, Egorov ES, Kasatskaya SA, Putintseva EV, Mamedov IZ, Staroverov DB, Shemiakina II, Zakharova MY, Davydov AN, Bolotin DA, Shugay M, Chudakov DM, Rudensky AY, Britanova OV.

Immunology. 2018 Feb;153(2):133-144. doi: 10.1111/imm.12857. Epub 2017 Nov 27. Review.

11.

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires.

Pogorelyy MV, Elhanati Y, Marcou Q, Sycheva AL, Komech EA, Nazarov VI, Britanova OV, Chudakov DM, Mamedov IZ, Lebedev YB, Mora T, Walczak AM.

PLoS Comput Biol. 2017 Jul 6;13(7):e1005572. doi: 10.1371/journal.pcbi.1005572. eCollection 2017 Jul.

12.

Tracking T-cell immune reconstitution after TCRαβ/CD19-depleted hematopoietic cells transplantation in children.

Zvyagin IV, Mamedov IZ, Tatarinova OV, Komech EA, Kurnikova EE, Boyakova EV, Brilliantova V, Shelikhova LN, Balashov DN, Shugay M, Sycheva AL, Kasatskaya SA, Lebedev YB, Maschan AA, Maschan MA, Chudakov DM.

Leukemia. 2017 May;31(5):1145-1153. doi: 10.1038/leu.2016.321. Epub 2016 Nov 4.

PMID:
27811849
13.

High-quality full-length immunoglobulin profiling with unique molecular barcoding.

Turchaninova MA, Davydov A, Britanova OV, Shugay M, Bikos V, Egorov ES, Kirgizova VI, Merzlyak EM, Staroverov DB, Bolotin DA, Mamedov IZ, Izraelson M, Logacheva MD, Kladova O, Plevova K, Pospisilova S, Chudakov DM.

Nat Protoc. 2016 Sep;11(9):1599-616. doi: 10.1038/nprot.2016.093. Epub 2016 Aug 4.

PMID:
27490633
14.

Reliability of immune receptor rearrangements as genetic markers for minimal residual disease monitoring.

Nazarov VI, Minervina AA, Komkov AY, Pogorelyy MV, Maschan MA, Olshanskaya YV, Zvyagin IV, Chudakov DM, Lebedev YB, Mamedov IZ.

Bone Marrow Transplant. 2016 Oct;51(10):1408-1410. doi: 10.1038/bmt.2016.148. Epub 2016 May 23. No abstract available.

PMID:
27214078
15.

Advanced lymphoblastic clones detection in T-cell leukemia.

Minervina AA, Komkov AY, Mamedov IZ, Lebedev YB.

Dokl Biochem Biophys. 2016 Mar;467(1):85-8. doi: 10.1134/S1607672916020022. Epub 2016 May 20.

PMID:
27193704
16.

Local fitness landscape of the green fluorescent protein.

Sarkisyan KS, Bolotin DA, Meer MV, Usmanova DR, Mishin AS, Sharonov GV, Ivankov DN, Bozhanova NG, Baranov MS, Soylemez O, Bogatyreva NS, Vlasov PK, Egorov ES, Logacheva MD, Kondrashov AS, Chudakov DM, Putintseva EV, Mamedov IZ, Tawfik DS, Lukyanov KA, Kondrashov FA.

Nature. 2016 May 19;533(7603):397-401. doi: 10.1038/nature17995. Epub 2016 May 11.

17.

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.

Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.

J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005. Epub 2016 May 13.

18.

tcR: an R package for T cell receptor repertoire advanced data analysis.

Nazarov VI, Pogorelyy MV, Komech EA, Zvyagin IV, Bolotin DA, Shugay M, Chudakov DM, Lebedev YB, Mamedov IZ.

BMC Bioinformatics. 2015 May 28;16:175. doi: 10.1186/s12859-015-0613-1.

19.

MiXCR: software for comprehensive adaptive immunity profiling.

Bolotin DA, Poslavsky S, Mitrophanov I, Shugay M, Mamedov IZ, Putintseva EV, Chudakov DM.

Nat Methods. 2015 May;12(5):380-1. doi: 10.1038/nmeth.3364. No abstract available.

PMID:
25924071
20.

The evidence for increased L1 activity in the site of human adult brain neurogenesis.

Kurnosov AA, Ustyugova SV, Nazarov VI, Minervina AA, Komkov AY, Shugay M, Pogorelyy MV, Khodosevich KV, Mamedov IZ, Lebedev YB.

PLoS One. 2015 Feb 17;10(2):e0117854. doi: 10.1371/journal.pone.0117854. eCollection 2015.

21.

Towards error-free profiling of immune repertoires.

Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, Linnemann C, Shagin D, Pospisilova S, Lukyanov S, Schumacher TN, Chudakov DM.

Nat Methods. 2014 Jun;11(6):653-5. doi: 10.1038/nmeth.2960. Epub 2014 May 4.

PMID:
24793455
22.

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

Zvyagin IV, Pogorelyy MV, Ivanova ME, Komech EA, Shugay M, Bolotin DA, Shelenkov AA, Kurnosov AA, Staroverov DB, Chudakov DM, Lebedev YB, Mamedov IZ.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):5980-5. doi: 10.1073/pnas.1319389111. Epub 2014 Apr 7.

23.

[A novel approach to identification of somatic retroelements' insertions in human genome].

Kurnosov AA, Ustiugova SV, Pogorelyĭ MV, Komkov AIu, Bolotin DA, Khodosevich KV, Mamedov IZ, Lebedev IuB.

Bioorg Khim. 2013 Jul-Aug;39(4):466-76. Russian.

PMID:
24707728
24.

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling.

Britanova OV, Putintseva EV, Shugay M, Merzlyak EM, Turchaninova MA, Staroverov DB, Bolotin DA, Lukyanov S, Bogdanova EA, Mamedov IZ, Lebedev YB, Chudakov DM.

J Immunol. 2014 Mar 15;192(6):2689-98. doi: 10.4049/jimmunol.1302064. Epub 2014 Feb 7.

25.

Huge Overlap of Individual TCR Beta Repertoires.

Shugay M, Bolotin DA, Putintseva EV, Pogorelyy MV, Mamedov IZ, Chudakov DM.

Front Immunol. 2013 Dec 25;4:466. doi: 10.3389/fimmu.2013.00466. eCollection 2013. No abstract available.

26.

Mother and child T cell receptor repertoires: deep profiling study.

Putintseva EV, Britanova OV, Staroverov DB, Merzlyak EM, Turchaninova MA, Shugay M, Bolotin DA, Pogorelyy MV, Mamedov IZ, Bobrynina V, Maschan M, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 25;4:463. doi: 10.3389/fimmu.2013.00463. eCollection 2013.

27.

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

Mamedov IZ, Britanova OV, Zvyagin IV, Turchaninova MA, Bolotin DA, Putintseva EV, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 23;4:456. doi: 10.3389/fimmu.2013.00456. eCollection 2013.

28.

High-throughput identification of antigen-specific TCRs by TCR gene capture.

Linnemann C, Heemskerk B, Kvistborg P, Kluin RJ, Bolotin DA, Chen X, Bresser K, Nieuwland M, Schotte R, Michels S, Gomez-Eerland R, Jahn L, Hombrink P, Legrand N, Shu CJ, Mamedov IZ, Velds A, Blank CU, Haanen JB, Turchaninova MA, Kerkhoven RM, Spits H, Hadrup SR, Heemskerk MH, Blankenstein T, Chudakov DM, Bendle GM, Schumacher TN.

Nat Med. 2013 Nov;19(11):1534-41. doi: 10.1038/nm.3359. Epub 2013 Oct 13.

PMID:
24121928
29.

MiTCR: software for T-cell receptor sequencing data analysis.

Bolotin DA, Shugay M, Mamedov IZ, Putintseva EV, Turchaninova MA, Zvyagin IV, Britanova OV, Chudakov DM.

Nat Methods. 2013 Sep;10(9):813-4. doi: 10.1038/nmeth.2555. Epub 2013 Jul 28. No abstract available.

PMID:
23892897
30.

Pairing of T-cell receptor chains via emulsion PCR.

Turchaninova MA, Britanova OV, Bolotin DA, Shugay M, Putintseva EV, Staroverov DB, Sharonov G, Shcherbo D, Zvyagin IV, Mamedov IZ, Linnemann C, Schumacher TN, Chudakov DM.

Eur J Immunol. 2013 Sep;43(9):2507-15. doi: 10.1002/eji.201343453. Epub 2013 Jun 26.

31.

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

Bolotin DA, Mamedov IZ, Britanova OV, Zvyagin IV, Shagin D, Ustyugova SV, Turchaninova MA, Lukyanov S, Lebedev YB, Chudakov DM.

Eur J Immunol. 2012 Nov;42(11):3073-83. doi: 10.1002/eji.201242517. Epub 2012 Sep 24.

32.

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy.

Britanova OV, Bochkova AG, Staroverov DB, Fedorenko DA, Bolotin DA, Mamedov IZ, Turchaninova MA, Putintseva EV, Kotlobay AA, Lukyanov S, Novik AA, Lebedev YB, Chudakov DM.

Bone Marrow Transplant. 2012 Nov;47(11):1479-81. doi: 10.1038/bmt.2012.44. Epub 2012 Mar 12. No abstract available.

PMID:
22410749
33.

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

Mamedov IZ, Britanova OV, Bolotin DA, Chkalina AV, Staroverov DB, Zvyagin IV, Kotlobay AA, Turchaninova MA, Fedorenko DA, Novik AA, Sharonov GV, Lukyanov S, Chudakov DM, Lebedev YB.

EMBO Mol Med. 2011 Apr;3(4):201-7. doi: 10.1002/emmm.201100129. Epub 2011 Mar 4.

34.

Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics.

Teh C, Chudakov DM, Poon KL, Mamedov IZ, Sek JY, Shidlovsky K, Lukyanov S, Korzh V.

BMC Dev Biol. 2010 Nov 2;10:110. doi: 10.1186/1471-213X-10-110.

35.

Contribution of functional KIR3DL1 to ankylosing spondylitis.

Zvyagin IV, Mamedov IZ, Britanova OV, Staroverov DB, Nasonov EL, Bochkova AG, Chkalina AV, Kotlobay AA, Korostin DO, Rebrikov DV, Lukyanov S, Lebedev YB, Chudakov DM.

Cell Mol Immunol. 2010 Nov;7(6):471-6. doi: 10.1038/cmi.2010.42. Epub 2010 Sep 6.

36.

Association of ERAP1 Allelic Variants with Risk of Ankylosing Spondylitis.

Zvyagin IV, Dorodnykh VY, Mamedov IZ, Staroverov DB, Bochkova AG, Rebrikov DV, Lebedev YB.

Acta Naturae. 2010 Jul;2(3):72-7.

37.

Normalization of genomic DNA using duplex-specific nuclease.

Shagina I, Bogdanova E, Mamedov IZ, Lebedev Y, Lukyanov S, Shagin D.

Biotechniques. 2010 Jun;48(6):455-9. doi: 10.2144/000113422.

38.

[The oligoclonal expansion of T cells: study of its stability over time].

Chkalina AV, Zviagin IV, Mamedov IZ, Britanova OV, Staroverov DB, Lebedev IuB.

Bioorg Khim. 2010 Mar-Apr;36(2):206-14. Russian.

PMID:
20531479
39.

[Retroposons in modern human genome evolution].

Amosova AL, Komkov AIu, Ustiugova SV, Mamedov IZ, Lebedev IuB.

Bioorg Khim. 2009 Nov-Dec;35(6):779-88. Review. Russian.

PMID:
20208577
40.

A new set of markers for human identification based on 32 polymorphic Alu insertions.

Mamedov IZ, Shagina IA, Kurnikova MA, Novozhilov SN, Shagin DA, Lebedev YB.

Eur J Hum Genet. 2010 Jul;18(7):808-14. doi: 10.1038/ejhg.2010.22. Epub 2010 Feb 24.

41.

Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients.

Mamedov IZ, Britanova OV, Chkalina AV, Staroverov DB, Amosova AL, Mishin AS, Kurnikova MA, Zvyagin IV, Mutovina ZY, Gordeev AV, Khaidukov SV, Sharonov GV, Shagin DA, Chudakov DM, Lebedev YB.

Autoimmunity. 2009 Sep;42(6):525-36. doi: 10.1080/08916930902960362.

PMID:
19657773
42.

[A new database on polymorphic retroelements in human genome (PRED)].

Mamedov IZ, Amosov AL, Fisunov GIu, Lebedev IuB.

Mol Biol (Mosk). 2008 Jul-Aug;42(4):721-7. Russian.

PMID:
18856073
43.

Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner.

Lebedev YB, Amosova AL, Mamedov IZ, Fisunov GY, Sverdlov ED.

Gene. 2007 Apr 1;390(1-2):122-9. Epub 2006 Oct 17.

PMID:
17118582
44.

Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach.

Mamedov IZ, Arzumanyan ES, Amosova AL, Lebedev YB, Sverdlov ED.

Nucleic Acids Res. 2005 Jan 26;33(2):e16.

45.
46.

Full-sized HERV-K (HML-2) human endogenous retroviral LTR sequences on human chromosome 21: map locations and evolutionary history.

Kurdyukov SG, Lebedev YB, Artamonova II, Gorodentseva TN, Batrak AV, Mamedov IZ, Azhikina TL, Legchilina SP, Efimenko IG, Gardiner K, Sverdlov ED.

Gene. 2001 Jul 25;273(1):51-61.

PMID:
11483360

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