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Items: 1 to 50 of 89

1.

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.

Munck N, Leekitcharoenphon P, Litrup E, Kaas R, Meinen A, Guillier L, Tang Y, Malorny B, Palma F, Borowiak M, Gourmelon M, Simon S, Banerji S, Petrovska L, Dallman TJ, Hald T.

Sci Data. 2020 Mar 3;7(1):75. doi: 10.1038/s41597-020-0417-7.

2.

Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From Environment, Feed, Animals and Food (2011-2018) in Germany.

Borowiak M, Baumann B, Fischer J, Thomas K, Deneke C, Hammerl JA, Szabo I, Malorny B.

Front Microbiol. 2020 Feb 4;11:80. doi: 10.3389/fmicb.2020.00080. eCollection 2020.

3.

Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential.

Golz JC, Epping L, Knüver MT, Borowiak M, Hartkopf F, Deneke C, Malorny B, Semmler T, Stingl K.

Sci Rep. 2020 Feb 28;10(1):3686. doi: 10.1038/s41598-020-60320-y.

4.

Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data.

Uelze L, Borowiak M, Deneke C, Szabó I, Fischer J, Tausch SH, Malorny B.

Appl Environ Microbiol. 2020 Feb 18;86(5). pii: e02265-19. doi: 10.1128/AEM.02265-19. Print 2020 Feb 18.

5.

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep.

Uelze L, Borowiak M, Deneke C, Jacobs C, Szabó I, Tausch SH, Malorny B.

Gut Pathog. 2019 Oct 14;11:48. doi: 10.1186/s13099-019-0330-9. eCollection 2019.

6.

Salmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017.

Meinen A, Simon S, Banerji S, Szabo I, Malorny B, Borowiak M, Hadziabdic S, Becker N, Luber P, Lohr D, Harms C, Plenge-Bönig A, Mellou K, Mandilara G, Mossong J, Ragimbeau C, Weicherding P, Hau P, Dědičová D, Šafaříková L, Nair S, Dallman TJ, Larkin L, McCormick J, De Pinna E, Severi E, Kotila S, Niskanen T, Rizzi V, Deserio D, Flieger A, Stark K.

Euro Surveill. 2019 Sep;24(36). doi: 10.2807/1560-7917.ES.2019.24.36.1800543.

7.

Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing.

Grützke J, Malorny B, Hammerl JA, Busch A, Tausch SH, Tomaso H, Deneke C.

Front Microbiol. 2019 Aug 6;10:1805. doi: 10.3389/fmicb.2019.01805. eCollection 2019.

8.

Detection of VIM-1-Producing Enterobacter cloacae and Salmonella enterica Serovars Infantis and Goldcoast at a Breeding Pig Farm in Germany in 2017 and Their Molecular Relationship to Former VIM-1-Producing S. Infantis Isolates in German Livestock Production.

Roschanski N, Hadziabdic S, Borowiak M, Malorny B, Tenhagen BA, Projahn M, Kaesbohrer A, Guenther S, Szabo I, Roesler U, Fischer J.

mSphere. 2019 Jun 12;4(3). pii: e00089-19. doi: 10.1128/mSphere.00089-19.

9.

The bla NDM-1-Carrying IncA/C2 Plasmid Underlies Structural Alterations and Cointegrate Formation In Vivo.

Hadziabdic S, Fischer J, Borowiak M, Malorny B, Juraschek K, Kaesbohrer A, Guerra B, Deneke C, Gonzalez-Zorn B, Szabo I.

Antimicrob Agents Chemother. 2019 Jul 25;63(8). pii: e00380-19. doi: 10.1128/AAC.00380-19. Print 2019 Aug.

10.

Characterization of mcr-5-Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany.

Borowiak M, Hammerl JA, Deneke C, Fischer J, Szabo I, Malorny B.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00063-19. doi: 10.1128/AAC.00063-19. Print 2019 Jun.

11.

Complete Genome Sequence of an Avian Native NDM-1-Producing Salmonella enterica subsp. enterica Serovar Corvallis Strain.

Hadziabdic S, Borowiak M, Bloch A, Malorny B, Szabo I, Guerra B, Kaesbohrer A, Fischer J.

Genome Announc. 2018 Jun 28;6(26). pii: e00593-18. doi: 10.1128/genomeA.00593-18.

12.

Complete Genome Sequence of a VIM-1-Producing Salmonella enterica subsp. enterica Serovar Infantis Isolate Derived from Minced Pork Meat.

Borowiak M, Fischer J, Baumann B, Hammerl JA, Szabo I, Malorny B.

Genome Announc. 2018 Apr 26;6(17). pii: e00327-18. doi: 10.1128/genomeA.00327-18.

13.

mcr-5 and a novel mcr-5.2 variant in Escherichia coli isolates from food and food-producing animals, Germany, 2010 to 2017.

Hammerl JA, Borowiak M, Schmoger S, Shamoun D, Grobbel M, Malorny B, Tenhagen BA, Käsbohrer A.

J Antimicrob Chemother. 2018 May 1;73(5):1433-1435. doi: 10.1093/jac/dky020. No abstract available.

PMID:
29444245
14.

Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes.

Rebelo AR, Bortolaia V, Kjeldgaard JS, Pedersen SK, Leekitcharoenphon P, Hansen IM, Guerra B, Malorny B, Borowiak M, Hammerl JA, Battisti A, Franco A, Alba P, Perrin-Guyomard A, Granier SA, De Frutos Escobar C, Malhotra-Kumar S, Villa L, Carattoli A, Hendriksen RS.

Euro Surveill. 2018 Feb;23(6). doi: 10.2807/1560-7917.ES.2018.23.6.17-00672. Erratum in: Euro Surveill. 2018 Feb;23(7):.

15.

In Vivo Transfer and Microevolution of Avian Native IncA/C2blaNDM-1-Carrying Plasmid pRH-1238 during a Broiler Chicken Infection Study.

Hadziabdic S, Fischer J, Malorny B, Borowiak M, Guerra B, Kaesbohrer A, Gonzalez-Zorn B, Szabo I.

Antimicrob Agents Chemother. 2018 Mar 27;62(4). pii: e02128-17. doi: 10.1128/AAC.02128-17. Print 2018 Apr.

16.

Evaluation of WGS based approaches for investigating a food-borne outbreak caused by Salmonella enterica serovar Derby in Germany.

Simon S, Trost E, Bender J, Fuchs S, Malorny B, Rabsch W, Prager R, Tietze E, Flieger A.

Food Microbiol. 2018 May;71:46-54. doi: 10.1016/j.fm.2017.08.017. Epub 2017 Aug 25.

PMID:
29366468
17.

Complete Genome Sequence of the Temperate Klebsiella pneumoniae Phage KPP5665-2.

Carl G, Jäckel C, Grützke J, Hertwig S, Grobbel M, Malorny B, Rau J, Käsbohrer A, Hammerl JA.

Genome Announc. 2017 Oct 26;5(43). pii: e01118-17. doi: 10.1128/genomeA.01118-17.

18.

Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B.

Borowiak M, Fischer J, Hammerl JA, Hendriksen RS, Szabo I, Malorny B.

J Antimicrob Chemother. 2017 Dec 1;72(12):3317-3324. doi: 10.1093/jac/dkx327.

PMID:
28962028
19.

Molecular Tracing to Find Source of Protracted Invasive Listeriosis Outbreak, Southern Germany, 2012-2016.

Kleta S, Hammerl JA, Dieckmann R, Malorny B, Borowiak M, Halbedel S, Prager R, Trost E, Flieger A, Wilking H, Vygen-Bonnet S, Busch U, Messelhäußer U, Horlacher S, Schönberger K, Lohr D, Aichinger E, Luber P, Hensel A, Al Dahouk S.

Emerg Infect Dis. 2017 Oct;23(10):1680-1683. doi: 10.3201/eid2310.161623.

20.

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Paratyphi B Sequence Type 28 Harboring mcr-1.

Borowiak M, Hammerl JA, Fischer J, Szabo I, Malorny B.

Genome Announc. 2017 Sep 14;5(37). pii: e00991-17. doi: 10.1128/genomeA.00991-17.

21.

Genetic basis for loss of immuno-reactive O-chain in Salmonella enterica serovar Enteritidis veterinary isolates.

Szabo I, Grafe M, Kemper N, Junker E, Malorny B.

Vet Microbiol. 2017 May;204:165-173. doi: 10.1016/j.vetmic.2017.03.033. Epub 2017 Apr 8.

PMID:
28532797
22.

VIM-1-producing Salmonella Infantis isolated from swine and minced pork meat in Germany.

Borowiak M, Szabo I, Baumann B, Junker E, Hammerl JA, Kaesbohrer A, Malorny B, Fischer J.

J Antimicrob Chemother. 2017 Jul 1;72(7):2131-2133. doi: 10.1093/jac/dkx101. No abstract available.

PMID:
28369508
23.

Horizontal Acquisition of a Multidrug-Resistance Module (R-type ASSuT) Is Responsible for the Monophasic Phenotype in a Widespread Clone of Salmonella Serovar 4,[5],12:i:.

García P, Malorny B, Rodicio MR, Stephan R, Hächler H, Guerra B, Lucarelli C.

Front Microbiol. 2016 May 10;7:680. doi: 10.3389/fmicb.2016.00680. eCollection 2016.

24.

[Salmonella spp. prevalence and contamination risk factors in broiler and broiler meat of Gallus gallus in Germany and the European Union].

Maurischat S, Rossow M, Ellerbroek L, Pichner R, Malorny B.

Berl Munch Tierarztl Wochenschr. 2015 Jan-Feb;128(1-2):3-13. German.

PMID:
25876278
25.

Rapid real-time PCR methods to distinguish Salmonella Enteritidis wildtype field isolates from vaccine strains Salmovac SE/Gallivac SE and AviPro SALMONELLA VAC E.

Maurischat S, Szabo I, Baumann B, Malorny B.

J Microbiol Methods. 2015 May;112:92-8. doi: 10.1016/j.mimet.2015.03.015. Epub 2015 Mar 18.

PMID:
25794902
26.

Rapid detection and specific differentiation of Salmonella enterica subsp. enterica Enteritidis, Typhimurium and its monophasic variant 4,[5],12:i:- by real-time multiplex PCR.

Maurischat S, Baumann B, Martin A, Malorny B.

Int J Food Microbiol. 2015 Jan 16;193:8-14. doi: 10.1016/j.ijfoodmicro.2014.10.004. Epub 2014 Oct 13.

PMID:
25462917
27.

Molecular epidemiology of Salmonella enterica serovar Kottbus isolated in Germany from humans, food and animals.

Toboldt A, Tietze E, Helmuth R, Junker E, Fruth A, Malorny B.

Vet Microbiol. 2014 May 14;170(1-2):97-108. doi: 10.1016/j.vetmic.2014.01.020. Epub 2014 Feb 4.

PMID:
24559660
28.

An outbreak of Salmonella Newport associated with mung bean sprouts in Germany and the Netherlands, October to November 2011.

Bayer C, Bernard H, Prager R, Rabsch W, Hiller P, Malorny B, Pfefferkorn B, Frank C, de Jong A, Friesema I, Stark K, Rosner B.

Euro Surveill. 2014 Jan 9;19(1). pii: 20665. Erratum in: Euro Surveill. 2013;19(2):pii/20676.

29.

Population structure of Salmonella enterica serovar 4,[5],12:b:- strains and likely sources of human infection.

Toboldt A, Tietze E, Helmuth R, Junker E, Fruth A, Malorny B.

Appl Environ Microbiol. 2013 Sep;79(17):5121-9. doi: 10.1128/AEM.01735-13. Epub 2013 Jun 21.

30.

Characterization of Salmonella enterica subsp. enterica serovar 4,[5],12:i:- clones isolated from human and other sources in Switzerland between 2007 and 2011.

Gallati C, Stephan R, Hächler H, Malorny B, Schroeter A, Nüesch-Inderbinen M.

Foodborne Pathog Dis. 2013 Jun;10(6):549-54. doi: 10.1089/fpd.2012.1407. Epub 2013 Apr 24.

31.

Use of multilocus variable-number tandem repeat analysis (MLVA) in eight European countries, 2012.

Lindstedt BA, Torpdahl M, Vergnaud G, Le Hello S, Weill FX, Tietze E, Malorny B, Prendergast DM, Ní Ghallchoir E, Lista RF, Schouls LM, Söderlund R, Börjesson S, Åkerström S.

Euro Surveill. 2013 Jan 24;18(4):20385.

32.

Genetic types, gene repertoire, and evolution of isolates of the Salmonella enterica serovar 4,5,12:i:- Spanish clone assigned to different phage types.

García P, Malorny B, Hauser E, Mendoza MC, Rodicio MR.

J Clin Microbiol. 2013 Mar;51(3):973-8. doi: 10.1128/JCM.02777-12. Epub 2013 Jan 16.

33.

Human infections attributable to the D-tartrate-fermenting variant of Salmonella enterica serovar Paratyphi B in Germany originate in reptiles and, on rare occasions, poultry.

Toboldt A, Tietze E, Helmuth R, Fruth A, Junker E, Malorny B.

Appl Environ Microbiol. 2012 Oct;78(20):7347-57. Epub 2012 Aug 10.

34.

Clonal dissemination of Salmonella enterica serovar Infantis in Germany.

Hauser E, Tietze E, Helmuth R, Junker E, Prager R, Schroeter A, Rabsch W, Fruth A, Toboldt A, Malorny B.

Foodborne Pathog Dis. 2012 Apr;9(4):352-60. doi: 10.1089/fpd.2011.1038. Epub 2012 Mar 8.

PMID:
22401270
35.

A quantitative approach towards a better understanding of the dynamics of Salmonella spp. in a pork slaughter-line.

van Hoek AH, de Jonge R, van Overbeek WM, Bouw E, Pielaat A, Smid JH, Malorny B, Junker E, Löfström C, Pedersen K, Aarts HJ, Heres L.

Int J Food Microbiol. 2012 Feb 1;153(1-2):45-52. doi: 10.1016/j.ijfoodmicro.2011.10.013. Epub 2011 Oct 30.

PMID:
22119458
36.

Extended-spectrum β-lactamases in German isolates belonging to the emerging monophasic Salmonella enterica subsp. enterica serovar Typhimurium 4,[5],12:i:- European clone.

Rodríguez I, Jahn S, Schroeter A, Malorny B, Helmuth R, Guerra B.

J Antimicrob Chemother. 2012 Feb;67(2):505-8. doi: 10.1093/jac/dkr452. Epub 2011 Nov 4. No abstract available.

PMID:
22058374
37.

[Report on Salmonella isolates submitted to the German National Reference Laboratory for running analyses and tests on zoonoses (Salmonella) in the year 2009].

Friedrich A, Szabo I, Dorn C, Schroeter A, Jaber M, Berendonk G, Brom M, Ledwolorz J, Malorny B, Helmuth R.

Berl Munch Tierarztl Wochenschr. 2011 Sep-Oct;124(9-10):401-10. German.

PMID:
21950218
38.

Diversity of Salmonella enterica serovar Derby isolated from pig, pork and humans in Germany.

Hauser E, Hebner F, Tietze E, Helmuth R, Junker E, Prager R, Schroeter A, Rabsch W, Fruth A, Malorny B.

Int J Food Microbiol. 2011 Dec 2;151(2):141-9. doi: 10.1016/j.ijfoodmicro.2011.08.020. Epub 2011 Aug 27.

PMID:
21917347
39.

Antimicrobial resistance and virulence determinants in European Salmonella genomic island 1-positive Salmonella enterica isolates from different origins.

Beutlich J, Jahn S, Malorny B, Hauser E, Hühn S, Schroeter A, Rodicio MR, Appel B, Threlfall J, Mevius D, Helmuth R, Guerra B; Med-Vet-Net WP21 Project Group.

Appl Environ Microbiol. 2011 Aug 15;77(16):5655-64. doi: 10.1128/AEM.00425-11. Epub 2011 Jun 24.

40.
41.

Direct detection of single-nucleotide polymorphisms in bacterial DNA by SNPtrap.

Grønlund H, Moen B, Hoorfar J, Radstrøm P, Malorny B, Rudi K.

Prep Biochem Biotechnol. 2011;41(2):166-74. doi: 10.1080/10826068.2011.547366.

PMID:
21442552
42.

A multiplex ligation detection assay for the characterization of Salmonella enterica strains.

Aarts HJ, Vos P, Larsson JT, van Hoek AH, Huehn S, Weijers T, Grønlund HA, Malorny B.

Int J Food Microbiol. 2011 Mar 1;145 Suppl 1:S68-78. doi: 10.1016/j.ijfoodmicro.2010.10.010. Epub 2010 Oct 21.

PMID:
21093086
43.

Different mutations in the oafA gene lead to loss of O5-antigen expression in Salmonella enterica serovar Typhimurium.

Hauser E, Junker E, Helmuth R, Malorny B.

J Appl Microbiol. 2011 Jan;110(1):248-53. doi: 10.1111/j.1365-2672.2010.04877.x. Epub 2010 Oct 21.

44.

A novel strategy to obtain quantitative data for modelling: combined enrichment and real-time PCR for enumeration of salmonellae from pig carcasses.

Krämer N, Löfström C, Vigre H, Hoorfar J, Bunge C, Malorny B.

Int J Food Microbiol. 2011 Mar 1;145 Suppl 1:S86-95. doi: 10.1016/j.ijfoodmicro.2010.08.026. Epub 2010 Sep 18.

PMID:
20855120
45.

Microarray-based genotyping of Salmonella: inter-laboratory evaluation of reproducibility and standardization potential.

Grønlund H, Riber L, Vigre H, Löfström C, Folling L, Huehn S, Malorny B, Rådström P, Rudi K, Hoorfar J.

Int J Food Microbiol. 2011 Mar 1;145 Suppl 1:S79-85. doi: 10.1016/j.ijfoodmicro.2010.08.007. Epub 2010 Aug 14.

PMID:
20817296
46.

Association between phylogeny, virulence potential and serovars of Salmonella enterica.

Litrup E, Torpdahl M, Malorny B, Huehn S, Christensen H, Nielsen EM.

Infect Genet Evol. 2010 Oct;10(7):1132-9. doi: 10.1016/j.meegid.2010.07.015. Epub 2010 Jul 23.

PMID:
20656064
47.

Pork contaminated with Salmonella enterica serovar 4,[5],12:i:-, an emerging health risk for humans.

Hauser E, Tietze E, Helmuth R, Junker E, Blank K, Prager R, Rabsch W, Appel B, Fruth A, Malorny B.

Appl Environ Microbiol. 2010 Jul;76(14):4601-10. doi: 10.1128/AEM.02991-09. Epub 2010 May 14.

48.

DNA microarray analysis of Salmonella serotype Typhimurium strains causing different symptoms of disease.

Litrup E, Torpdahl M, Malorny B, Huehn S, Helms M, Christensen H, Nielsen EM.

BMC Microbiol. 2010 Mar 31;10:96. doi: 10.1186/1471-2180-10-96.

49.

Virulotyping and antimicrobial resistance typing of Salmonella enterica serovars relevant to human health in Europe.

Huehn S, La Ragione RM, Anjum M, Saunders M, Woodward MJ, Bunge C, Helmuth R, Hauser E, Guerra B, Beutlich J, Brisabois A, Peters T, Svensson L, Madajczak G, Litrup E, Imre A, Herrera-Leon S, Mevius D, Newell DG, Malorny B.

Foodborne Pathog Dis. 2010 May;7(5):523-35. doi: 10.1089/fpd.2009.0447.

PMID:
20039795
50.

DNA microarray for molecular epidemiology of Salmonella.

Huehn S, Malorny B.

Methods Mol Biol. 2009;551:249-85. doi: 10.1007/978-1-60327-999-4_19.

PMID:
19521880

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