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Items: 1 to 50 of 74

1.

The Role of a Class III GA 2-Oxidase in Tomato Internode Elongation.

Schrager-Lavelle A, Gath NN, Devisetty UK, Carrera E, López-Díaz I, Blazquez MA, Maloof JN.

Plant J. 2018 Nov 5. doi: 10.1111/tpj.14145. [Epub ahead of print]

PMID:
30394600
2.

Network analysis reveals a role for salicylic acid pathway components in shade avoidance.

Nozue K, Devisetty UK, Lekkala S, Mueller-Moule P, Bak A, Casteel CL, Maloof JN.

Plant Physiol. 2018 Oct 22. pii: pp.00920.2018. doi: 10.1104/pp.18.00920. [Epub ahead of print]

3.

Circadian rhythms vary over the growing season and correlate with fitness components.

Rubin MJ, Brock MT, Davis AM, German ZM, Knapp M, Welch SM, Harmer SL, Maloof JN, Davis SJ, Weinig C.

Mol Ecol. 2017 Oct;26(20):5528-5540. doi: 10.1111/mec.14287. Epub 2017 Sep 8.

PMID:
28792639
4.

Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.

Bucksch A, Atta-Boateng A, Azihou AF, Battogtokh D, Baumgartner A, Binder BM, Braybrook SA, Chang C, Coneva V, DeWitt TJ, Fletcher AG, Gehan MA, Diaz-Martinez DH, Hong L, Iyer-Pascuzzi AS, Klein LL, Leiboff S, Li M, Lynch JP, Maizel A, Maloof JN, Markelz RJC, Martinez CC, Miller LA, Mio W, Palubicki W, Poorter H, Pradal C, Price CA, Puttonen E, Reese JB, Rellán-Álvarez R, Spalding EP, Sparks EE, Topp CN, Williams JH, Chitwood DH.

Front Plant Sci. 2017 Jun 9;8:900. doi: 10.3389/fpls.2017.00900. eCollection 2017. Review.

5.

Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.

Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN.

G3 (Bethesda). 2017 Jul 5;7(7):2259-2270. doi: 10.1534/g3.117.043000.

6.

The Divergence of Flowering Time Modulated by FT/TFL1 Is Independent to Their Interaction and Binding Activities.

Wang Z, Yang R, Devisetty UK, Maloof JN, Zuo Y, Li J, Shen Y, Zhao J, Bao M, Ning G.

Front Plant Sci. 2017 May 8;8:697. doi: 10.3389/fpls.2017.00697. eCollection 2017.

7.

The Generation of Doubled Haploid Lines for QTL Mapping.

Filiault DL, Seymour DK, Maruthachalam R, Maloof JN.

Methods Mol Biol. 2017;1610:39-57. doi: 10.1007/978-1-4939-7003-2_4.

PMID:
28439856
8.

YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.

Müller-Moulé P, Nozue K, Pytlak ML, Palmer CM, Covington MF, Wallace AD, Harmer SL, Maloof JN.

PeerJ. 2016 Oct 13;4:e2574. eCollection 2016.

9.

Tomato phyE Is Required for Shade Avoidance in the Absence of phyB1 and phyB2.

Schrager-Lavelle A, Herrera LA, Maloof JN.

Front Plant Sci. 2016 Sep 16;7:1275. eCollection 2016.

10.

A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.

11.

eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.

12.

Molecular control of crop shade avoidance.

Carriedo LG, Maloof JN, Brady SM.

Curr Opin Plant Biol. 2016 Apr;30:151-8. doi: 10.1016/j.pbi.2016.03.005. Epub 2016 Mar 24. Review.

PMID:
27016665
13.

Genetic architecture, biochemical underpinnings and ecological impact of floral UV patterning.

Brock MT, Lucas LK, Anderson NA, Rubin MJ, Markelz RJ, Covington MF, Devisetty UK, Chapple C, Maloof JN, Weinig C.

Mol Ecol. 2016 Mar;25(5):1122-40. doi: 10.1111/mec.13542. Epub 2016 Feb 23.

PMID:
26800256
14.

Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.

PMID:
26569124
15.

Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.

16.

Structured Light-Based 3D Reconstruction System for Plants.

Nguyen TT, Slaughter DC, Max N, Maloof JN, Sinha N.

Sensors (Basel). 2015 Jul 29;15(8):18587-612. doi: 10.3390/s150818587.

17.

Reassess the t Test: Interact with All Your Data via ANOVA.

Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ.

Plant Cell. 2015 Aug;27(8):2088-94. doi: 10.1105/tpc.15.00238. Epub 2015 Jul 28.

18.

Shade avoidance components and pathways in adult plants revealed by phenotypic profiling.

Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN.

PLoS Genet. 2015 Apr 15;11(4):e1004953. doi: 10.1371/journal.pgen.1004953. eCollection 2015 Apr.

19.

Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2014 Sep;26(9):3616-29. doi: 10.1105/tpc.114.130112. Epub 2014 Sep 30.

20.

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.

Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN.

G3 (Bethesda). 2014 Aug 12;4(11):2065-78. doi: 10.1534/g3.114.012526. Erratum in: G3 (Bethesda). 2017 Jul 5;7(7):2405.

21.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
22.

Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2616-21. doi: 10.1073/pnas.1402835111. Epub 2014 Jun 9.

23.

New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating.

Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ.

Plant Physiol. 2014 May;165(1):175-85. doi: 10.1104/pp.113.233213. Epub 2014 Mar 12.

24.

A modern ampelography: a genetic basis for leaf shape and venation patterning in grape.

Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, Prins B, Li L, Myles S, Sinha NR.

Plant Physiol. 2014 Jan;164(1):259-72. doi: 10.1104/pp.113.229708. Epub 2013 Nov 27.

25.

A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines.

Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2013 Jul;25(7):2465-81. doi: 10.1105/tpc.113.112391. Epub 2013 Jul 19.

26.

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, Xiong G, Taylor-Teeples M, Brady SM, Pauly M, Weigel D, Usadel B, Fernie AR, Peng J, Sinha NR, Maloof JN.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2655-62. doi: 10.1073/pnas.1309606110. Epub 2013 Jun 26.

27.

Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures.

Chitwood DH, Maloof JN, Sinha NR.

Plant Physiol. 2013 Jun;162(2):537-52. doi: 10.1104/pp.112.213546. Epub 2013 Apr 12.

28.

Identification of novel loci regulating interspecific variation in root morphology and cellular development in tomato.

Ron M, Dorrity MW, de Lucas M, Toal T, Hernandez RI, Little SA, Maloof JN, Kliebenstein DJ, Brady SM.

Plant Physiol. 2013 Jun;162(2):755-68. doi: 10.1104/pp.113.217802. Epub 2013 Apr 10.

29.

LeafJ: an ImageJ plugin for semi-automated leaf shape measurement.

Maloof JN, Nozue K, Mumbach MR, Palmer CM.

J Vis Exp. 2013 Jan 21;(71). pii: 50028. doi: 10.3791/50028.

30.

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716.

Sharlach M, Dahlbeck D, Liu L, Chiu J, Jiménez-Gómez JM, Kimura S, Koenig D, Maloof JN, Sinha N, Minsavage GV, Jones JB, Stall RE, Staskawicz BJ.

Theor Appl Genet. 2013 Mar;126(3):601-9. doi: 10.1007/s00122-012-2004-6. Epub 2012 Nov 2.

PMID:
23117718
31.

A High-Throughput Method for Illumina RNA-Seq Library Preparation.

Kumar R, Ichihashi Y, Kimura S, Chitwood DH, Headland LR, Peng J, Maloof JN, Sinha NR.

Front Plant Sci. 2012 Aug 28;3:202. doi: 10.3389/fpls.2012.00202. eCollection 2012.

32.

A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response.

Filiault DL, Maloof JN.

PLoS Genet. 2012;8(3):e1002589. doi: 10.1371/journal.pgen.1002589. Epub 2012 Mar 15.

33.

Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping.

Seymour DK, Filiault DL, Henry IM, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SW, Maloof JN.

Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4227-32. doi: 10.1073/pnas.1117277109. Epub 2012 Feb 27.

34.

Native environment modulates leaf size and response to simulated foliar shade across wild tomato species.

Chitwood DH, Headland LR, Filiault DL, Kumar R, Jiménez-Gómez JM, Schrager AV, Park DS, Peng J, Sinha NR, Maloof JN.

PLoS One. 2012;7(1):e29570. doi: 10.1371/journal.pone.0029570. Epub 2012 Jan 12.

35.

The developmental trajectory of leaflet morphology in wild tomato species.

Chitwood DH, Headland LR, Kumar R, Peng J, Maloof JN, Sinha NR.

Plant Physiol. 2012 Mar;158(3):1230-40. doi: 10.1104/pp.111.192518. Epub 2012 Jan 12.

36.

Genomic analysis of QTLs and genes altering natural variation in stochastic noise.

Jimenez-Gomez JM, Corwin JA, Joseph B, Maloof JN, Kliebenstein DJ.

PLoS Genet. 2011 Sep;7(9):e1002295. doi: 10.1371/journal.pgen.1002295. Epub 2011 Sep 29.

37.

BBX32, an Arabidopsis B-Box protein, functions in light signaling by suppressing HY5-regulated gene expression and interacting with STH2/BBX21.

Holtan HE, Bandong S, Marion CM, Adam L, Tiwari S, Shen Y, Maloof JN, Maszle DR, Ohto MA, Preuss S, Meister R, Petracek M, Repetti PP, Reuber TL, Ratcliffe OJ, Khanna R.

Plant Physiol. 2011 Aug;156(4):2109-23. doi: 10.1104/pp.111.177139. Epub 2011 Jun 1.

38.

PIF genes mediate the effect of sucrose on seedling growth dynamics.

Stewart JL, Maloof JN, Nemhauser JL.

PLoS One. 2011;6(5):e19894. doi: 10.1371/journal.pone.0019894. Epub 2011 May 23.

39.

Circadian oscillation of gibberellin signaling in Arabidopsis.

Arana MV, Marín-de la Rosa N, Maloof JN, Blázquez MA, Alabadí D.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9292-7. doi: 10.1073/pnas.1101050108. Epub 2011 May 16.

40.

Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis.

Nozue K, Harmer SL, Maloof JN.

Plant Physiol. 2011 May;156(1):357-72. doi: 10.1104/pp.111.172684. Epub 2011 Mar 23.

41.

COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis.

Chang CS, Maloof JN, Wu SH.

Plant Physiol. 2011 May;156(1):228-39. doi: 10.1104/pp.111.175042. Epub 2011 Mar 22.

42.

Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis.

Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ.

Plant Cell. 2011 Feb;23(2):471-85. doi: 10.1105/tpc.110.082065. Epub 2011 Feb 22.

43.

Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors.

Kim K, Shin J, Lee SH, Kweon HS, Maloof JN, Choi G.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1729-34. doi: 10.1073/pnas.1011066108. Epub 2011 Jan 10.

44.

Recent advances in regulation of flowering.

Maloof JN.

F1000 Biol Rep. 2010 Feb 11;2. pii: 9. doi: 10.3410/B2-9.

45.

Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis.

Jiménez-Gómez JM, Wallace AD, Maloof JN.

PLoS Genet. 2010 Sep 9;6(9):e1001100. doi: 10.1371/journal.pgen.1001100.

46.

Floral genetic architecture: an examination of QTL architecture underlying floral (co)variation across environments.

Brock MT, Dechaine JM, Iniguez-Luy FL, Maloof JN, Stinchcombe JR, Weinig C.

Genetics. 2010 Dec;186(4):1451-65. doi: 10.1534/genetics.110.119982. Epub 2010 Sep 13.

48.

Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana.

Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D.

Genetics. 2009 Oct;183(2):723-32, 1SI-7SI. doi: 10.1534/genetics.109.104984. Epub 2009 Aug 3.

49.

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution.

Jiménez-Gómez JM, Maloof JN.

BMC Plant Biol. 2009 Jul 3;9:85. doi: 10.1186/1471-2229-9-85.

50.

Plant research accelerates along the (bio)informatics superhighway: symposium on plant sensing, response and adaptation to the environment.

Jiménez-Gómez JM, Maloof JN.

EMBO Rep. 2009 Jun;10(6):568-72. doi: 10.1038/embor.2009.116. Epub 2009 May 22. No abstract available.

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