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Items: 1 to 50 of 83

1.

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.

Mallick H, Franzosa EA, Mclver LJ, Banerjee S, Sirota-Madi A, Kostic AD, Clish CB, Vlamakis H, Xavier RJ, Huttenhower C.

Nat Commun. 2019 Jul 17;10(1):3136. doi: 10.1038/s41467-019-10927-1.

2.

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

Lloyd-Price J, Arze C, Ananthakrishnan AN, Schirmer M, Avila-Pacheco J, Poon TW, Andrews E, Ajami NJ, Bonham KS, Brislawn CJ, Casero D, Courtney H, Gonzalez A, Graeber TG, Hall AB, Lake K, Landers CJ, Mallick H, Plichta DR, Prasad M, Rahnavard G, Sauk J, Shungin D, Vázquez-Baeza Y, White RA 3rd; IBDMDB Investigators, Braun J, Denson LA, Jansson JK, Knight R, Kugathasan S, McGovern DPB, Petrosino JF, Stappenbeck TS, Winter HS, Clish CB, Franzosa EA, Vlamakis H, Xavier RJ, Huttenhower C.

Nature. 2019 May;569(7758):655-662. doi: 10.1038/s41586-019-1237-9. Epub 2019 May 29.

PMID:
31142855
3.

Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease.

Franzosa EA, Sirota-Madi A, Avila-Pacheco J, Fornelos N, Haiser HJ, Reinker S, Vatanen T, Hall AB, Mallick H, McIver LJ, Sauk JS, Wilson RG, Stevens BW, Scott JM, Pierce K, Deik AA, Bullock K, Imhann F, Porter JA, Zhernakova A, Fu J, Weersma RK, Wijmenga C, Clish CB, Vlamakis H, Huttenhower C, Xavier RJ.

Nat Microbiol. 2019 May;4(5):898. doi: 10.1038/s41564-019-0442-5.

PMID:
30971771
4.

Gut microbiome structure and metabolic activity in inflammatory bowel disease.

Franzosa EA, Sirota-Madi A, Avila-Pacheco J, Fornelos N, Haiser HJ, Reinker S, Vatanen T, Hall AB, Mallick H, McIver LJ, Sauk JS, Wilson RG, Stevens BW, Scott JM, Pierce K, Deik AA, Bullock K, Imhann F, Porter JA, Zhernakova A, Fu J, Weersma RK, Wijmenga C, Clish CB, Vlamakis H, Huttenhower C, Xavier RJ.

Nat Microbiol. 2019 Feb;4(2):293-305. doi: 10.1038/s41564-018-0306-4. Epub 2018 Dec 10. Erratum in: Nat Microbiol. 2019 May;4(5):898.

5.

Group regularization for zero-inflated negative binomial regression models with an application to health care demand in Germany.

Chatterjee S, Chowdhury S, Mallick H, Banerjee P, Garai B.

Stat Med. 2018 Sep 10;37(20):3012-3026. doi: 10.1002/sim.7804. Epub 2018 Jun 14.

PMID:
29900575
6.

Is skewed income distribution good for environmental quality? A comparative analysis among selected BRICS countries.

Mahalik MK, Mallick H, Padhan H, Sahoo B.

Environ Sci Pollut Res Int. 2018 Aug;25(23):23170-23194. doi: 10.1007/s11356-018-2401-8. Epub 2018 Jun 3.

PMID:
29862476
7.

Metatranscriptome of human faecal microbial communities in a cohort of adult men.

Abu-Ali GS, Mehta RS, Lloyd-Price J, Mallick H, Branck T, Ivey KL, Drew DA, DuLong C, Rimm E, Izard J, Chan AT, Huttenhower C.

Nat Microbiol. 2018 Mar;3(3):356-366. doi: 10.1038/s41564-017-0084-4. Epub 2018 Jan 15.

8.

Stability of the human faecal microbiome in a cohort of adult men.

Mehta RS, Abu-Ali GS, Drew DA, Lloyd-Price J, Subramanian A, Lochhead P, Joshi AD, Ivey KL, Khalili H, Brown GT, DuLong C, Song M, Nguyen LH, Mallick H, Rimm EB, Izard J, Huttenhower C, Chan AT.

Nat Microbiol. 2018 Mar;3(3):347-355. doi: 10.1038/s41564-017-0096-0. Epub 2018 Jan 15.

9.

Bayesian Bridge Regression.

Mallick H, Yi N.

J Appl Stat. 2018;45(6):988-1008. doi: 10.1080/02664763.2017.1324565. Epub 2017 May 10.

10.

Experimental design and quantitative analysis of microbial community multiomics.

Mallick H, Ma S, Franzosa EA, Vatanen T, Morgan XC, Huttenhower C.

Genome Biol. 2017 Nov 30;18(1):228. doi: 10.1186/s13059-017-1359-z. Review.

11.

Differences in Clinical Course, Genetics, and the Microbiome Between Familial and Sporadic Inflammatory Bowel Diseases.

Borren NZ, Conway G, Garber JJ, Khalili H, Budree S, Mallick H, Yajnik V, Xavier RJ, Ananthakrishnan AN.

J Crohns Colitis. 2018 Apr 27;12(5):525-531. doi: 10.1093/ecco-jcc/jjx154.

12.

A Bayesian method for detecting pairwise associations in compositional data.

Schwager E, Mallick H, Ventz S, Huttenhower C.

PLoS Comput Biol. 2017 Nov 15;13(11):e1005852. doi: 10.1371/journal.pcbi.1005852. eCollection 2017 Nov.

13.

Bayesian Group Bridge for Bi-level Variable Selection.

Mallick H, Yi N.

Comput Stat Data Anal. 2017 Jun;110:115-133. doi: 10.1016/j.csda.2017.01.002. Epub 2017 Jan 18.

14.

Participation of preoptic area TRPV4 ion channel in regulation of body temperature.

Yadav R, Jaryal AK, Mallick HN.

J Therm Biol. 2017 May;66:81-86. doi: 10.1016/j.jtherbio.2017.04.001. Epub 2017 Apr 6.

PMID:
28477913
15.

Negative binomial mixed models for analyzing microbiome count data.

Zhang X, Mallick H, Tang Z, Zhang L, Cui X, Benson AK, Yi N.

BMC Bioinformatics. 2017 Jan 3;18(1):4. doi: 10.1186/s12859-016-1441-7.

16.

Effects of NMDA and non-NMDA ionotropic glutamate receptors in the medial preoptic area on body temperature in awake rats.

Sengupta T, Jaryal AK, Mallick HN.

J Therm Biol. 2016 Oct;61:1-7. doi: 10.1016/j.jtherbio.2016.07.020. Epub 2016 Jul 29.

PMID:
27712650
17.

EM Adaptive LASSO-A Multilocus Modeling Strategy for Detecting SNPs Associated with Zero-inflated Count Phenotypes.

Mallick H, Tiwari HK.

Front Genet. 2016 Mar 30;7:32. doi: 10.3389/fgene.2016.00032. eCollection 2016.

18.

Clinical trial designs incorporating predictive biomarkers.

Renfro LA, Mallick H, An MW, Sargent DJ, Mandrekar SJ.

Cancer Treat Rev. 2016 Feb;43:74-82. doi: 10.1016/j.ctrv.2015.12.008. Epub 2016 Jan 5. Review.

19.

A genetic association study detects haplotypes associated with obstructive heart defects.

Li M, Cleves MA, Mallick H, Erickson SW, Tang X, Nick TG, Macleod SL, Hobbs CA; National Birth Defect Prevention Study.

Hum Genet. 2014 Sep;133(9):1127-38. doi: 10.1007/s00439-014-1453-1. Epub 2014 Jun 4.

20.

Transcriptomes and shRNA suppressors in a TP53 allele-specific model of early-onset colon cancer in African Americans.

Weige CC, Birtwistle MR, Mallick H, Yi N, Berrong Z, Cloessner E, Duff K, Tidwell J, Clendenning M, Wilkerson B, Farrell C, Bunz F, Ji H, Shtutman M, Creek KE, Banister CE, Buckhaults PJ.

Mol Cancer Res. 2014 Jul;12(7):1029-41. doi: 10.1158/1541-7786.MCR-13-0286-T. Epub 2014 Apr 17.

21.

Bayesian Methods for High Dimensional Linear Models.

Mallick H, Yi N.

J Biom Biostat. 2013 Jun 1;1:005.

22.

A New Bayesian Lasso.

Mallick H, Yi N.

Stat Interface. 2014;7(4):571-582.

23.

Multiple comparisons in genetic association studies: a hierarchical modeling approach.

Yi N, Xu S, Lou XY, Mallick H.

Stat Appl Genet Mol Biol. 2014 Feb;13(1):35-48. doi: 10.1515/sagmb-2012-0040.

24.

A risk algorithm for assessing short-term mortality for obese black and white men and women.

Lakoski SG, Mallick H, McClure LA, Safford M, Kissela B, Howard G, Cushman M.

Obesity (Silver Spring). 2014 Apr;22(4):1142-8. doi: 10.1002/oby.20622. Epub 2013 Oct 17.

25.

Intragastric administration of glutamate increases REM sleep in rats.

Datta K, Kumar D, Mallick HN.

Physiol Behav. 2013 Oct 2;122:178-81. doi: 10.1016/j.physbeh.2013.09.007. Epub 2013 Sep 17.

PMID:
24055576
26.

L-glutamate microinjection in the preoptic area increases brain and body temperature in freely moving rats.

Sengupta T, Jaryal AK, Kumar VM, Mallick HN.

Neuroreport. 2014 Jan 8;25(1):28-33. doi: 10.1097/WNR.0000000000000035.

PMID:
24051681
27.

Hypothalamic temperature: a key regulator in homeostatic restoration of sleep during chronic cold exposure in rats.

Kaushik MK, Kumar VM, Mallick HN.

Indian J Physiol Pharmacol. 2012 Oct-Dec;56(4):301-13.

PMID:
23781649
28.

Oronasopharyngeal suction versus wiping of the mouth and nose at birth: a randomised equivalency trial.

Kelleher J, Bhat R, Salas AA, Addis D, Mills EC, Mallick H, Tripathi A, Pruitt EP, Roane C, McNair T, Owen J, Ambalavanan N, Carlo WA.

Lancet. 2013 Jul 27;382(9889):326-30. doi: 10.1016/S0140-6736(13)60775-8. Epub 2013 Jun 3.

PMID:
23739521
29.

Setting APPI vision 2020: animal experiments in physiology and pharmacology.

Mallick HN.

Indian J Physiol Pharmacol. 2012 Jul-Sep;56(3):288-92. No abstract available.

PMID:
23734446
30.

Mortality and intestinal failure in surgical necrotizing enterocolitis.

Kelleher J, Mallick H, Soltau TD, Harmon CM, Dimmitt RA.

J Pediatr Surg. 2013 Mar;48(3):568-72. doi: 10.1016/j.jpedsurg.2012.11.028.

PMID:
23480914
31.

Dose-dependent facilitation of peripheral nerve regeneration by bone marrow-derived mononuclear cells: a randomized controlled study: laboratory investigation.

Raheja A, Suri V, Suri A, Sarkar C, Srivastava A, Mohanty S, Jain KG, Sharma MC, Mallick HN, Yadav PK, Kalaivani M, Pandey RM.

J Neurosurg. 2012 Dec;117(6):1170-81. doi: 10.3171/2012.8.JNS111446. Epub 2012 Oct 5.

PMID:
23039144
32.

Intracerebroventricular injection of orexin-2 receptor antagonist promotes REM sleep.

Kummangal BA, Kumar D, Mallick HN.

Behav Brain Res. 2013 Jan 15;237:59-62. doi: 10.1016/j.bbr.2012.09.015. Epub 2012 Sep 16.

PMID:
22989413
33.

Basal forebrain thermoregulatory mechanism modulates auto-regulated sleep.

Mallick HN, Kumar VM.

Front Neurol. 2012 Jun 27;3:102. doi: 10.3389/fneur.2012.00102. eCollection 2012.

34.

Glutamate microinjection in the medial septum of rats decreases paradoxical sleep and increases slow wave sleep.

Mukherjee D, Kaushik MK, Jaryal AK, Kumar VM, Mallick HN.

Neuroreport. 2012 May 9;23(7):451-6. doi: 10.1097/WNR.0b013e3283533692.

PMID:
22495000
35.

Warm sensitive neurons of the preoptic area regulate ambient temperature related changes in sleep in the rat.

Kumar D, Kumar VM, Mallick HN.

Indian J Physiol Pharmacol. 2011 Jul-Sep;55(3):262-71.

PMID:
22471234
36.

Glycine enhances glutamate-induced excitation in ventromedial hypothalamic neurons in awake rats.

Mallick HN, Kondoh T, Nishijo H, Ono T, Torii K.

Indian J Physiol Pharmacol. 2010 Oct-Dec;54(4):355-60.

PMID:
21675033
37.

Glutamate microinjection at the medial preoptic area enhances slow wave sleep in rats.

Kaushik MK, Kumar VM, Mallick HN.

Behav Brain Res. 2011 Feb 2;217(1):240-3. doi: 10.1016/j.bbr.2010.11.007. Epub 2010 Nov 9.

PMID:
21070818
38.

Homosexuality: a dilemma in discourse!

Gulia KK, Mallick HN.

Indian J Physiol Pharmacol. 2010 Jan-Mar;54(1):5-20. Review.

PMID:
21046915
39.

Lysine and arginine reduce the effects of cerebral ischemic insults and inhibit glutamate-induced neuronal activity in rats.

Kondoh T, Kameishi M, Mallick HN, Ono T, Torii K.

Front Integr Neurosci. 2010 Jun 14;4:18. doi: 10.3389/fnint.2010.00018. eCollection 2010.

40.

Changes in hypothalamic and body temperatures during 24 hours in rats.

Kaushik MK, Mallick HN, Kumar VM.

Indian J Physiol Pharmacol. 2009 Jan-Mar;53(1):88-92.

PMID:
19810582
41.

Activation of the gut-brain axis by dietary glutamate and physiologic significance in energy homeostasis.

Kondoh T, Mallick HN, Torii K.

Am J Clin Nutr. 2009 Sep;90(3):832S-837S. doi: 10.3945/ajcn.2009.27462V. Epub 2009 Jul 8.

PMID:
19587084
42.

Ambient temperature that induces maximum sleep in rats.

Kumar D, Mallick HN, Kumar VM.

Physiol Behav. 2009 Aug 4;98(1-2):186-91. doi: 10.1016/j.physbeh.2009.05.008. Epub 2009 May 20.

PMID:
19464303
43.

The septal area, site for the central regulation of penile erection during waking and rapid eye movement sleep in rats: a stimulation study.

Gulia KK, Jodo E, Kawauchi A, Miki T, Kayama Y, Mallick HN, Koyama Y.

Neuroscience. 2008 Oct 28;156(4):1064-73. doi: 10.1016/j.neuroscience.2008.08.032. Epub 2008 Aug 27.

PMID:
18804152
44.

The medial septum acts through the medial preoptic area for thermoregulation and works with it for sleep regulation.

Srividya R, Mallick HN, Kumar VM.

Indian J Physiol Pharmacol. 2007 Jul-Sep;51(3):261-73.

PMID:
18341223
45.

Understanding safety of glutamate in food and brain.

Mallick HN.

Indian J Physiol Pharmacol. 2007 Jul-Sep;51(3):216-34. Review.

PMID:
18341218
46.

Perirhinal cortex lesions delay ejaculation in rats.

Sharma K, Gulia KK, Kumar VM, Mallick HN.

Behav Brain Res. 2008 May 16;189(1):212-5. doi: 10.1016/j.bbr.2007.12.004. Epub 2008 Jan 22.

PMID:
18207253
47.

Brain areas activated after ejaculation in healthy young human subjects.

Mallick HN, Tandon S, Jagannathan NR, Gulia KK, Kumar VM.

Indian J Physiol Pharmacol. 2007 Jan-Mar;51(1):81-5.

PMID:
17877297
48.
49.

Alpha-1 adrenergic receptors in the medial preoptic area are involved in the induction of sleep.

Kumar VM, Vetrivelan R, Mallick HN.

Neurochem Res. 2006 Aug;31(8):1095-102. Epub 2006 Aug 9.

PMID:
16933152
50.

Sleep changes during chronic cold exposure showed that the homeostatic requirement of sleep is reduced in the medial preoptic area lesioned rats.

Prasad A, Mahapatra K, Mallick HN, Kumar VM.

Indian J Physiol Pharmacol. 2005 Oct-Dec;49(4):411-21.

PMID:
16579394

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