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Early trypsin activation develops independently of autophagy in caerulein-induced pancreatitis in mice.

Malla SR, Krueger B, Wartmann T, Sendler M, Mahajan UM, Weiss FU, Thiel FG, De Boni C, Gorelick FS, Halangk W, Aghdassi AA, Reinheckel T, Gukovskaya AS, Lerch MM, Mayerle J.

Cell Mol Life Sci. 2019 Jul 30. doi: 10.1007/s00018-019-03254-7. [Epub ahead of print]


Infectious versus non-infectious causes of oligoarticular inflammatory arthritis: A prospective study from a tertiary care hospital in north India.

Gupta N, Chaudhry R, Soneja M, Valappil VE, Malla S, Razik A, Vyas S, Ray A, Khan MA, Kumar U, Wig N.

Drug Discov Ther. 2019;13(2):96-100. doi: 10.5582/ddt.2019.01019.


Demystifying the mesenteric root lesions.

Kumar P, Malla S, Singh A, Razik A, Madhusudhan KS.

Abdom Radiol (NY). 2019 Aug;44(8):2708-2720. doi: 10.1007/s00261-019-02053-9. Epub 2019 May 11. Review.


Quantitative assessment of changes in cell growth, size and morphology during telomere-initiated cellular senescence in Saccharomyces cerevisiae.

Ghanem NZ, Malla SRL, Araki N, Lewis LK.

Exp Cell Res. 2019 Aug 1;381(1):18-28. doi: 10.1016/j.yexcr.2019.05.005. Epub 2019 May 7.


Macrodystrophia lipomatosa of the foot.

Malla S, Razik A, Das CJ.

BMJ Case Rep. 2019 May 6;12(5). pii: e229464. doi: 10.1136/bcr-2019-229464. No abstract available.


Efficacy and safety of a morning injection of insulin glargine 300 units/mL versus insulin glargine 100 units/mL in adult patients with type 1 diabetes: A multicentre, randomized controlled trial using continuous glucose monitoring.

Pettus J, Gill J, Paranjape S, Stewart J, Malla S, Edelman S, Bergenstal RM, Bode B.

Diabetes Obes Metab. 2019 Aug;21(8):1906-1913. doi: 10.1111/dom.13751. Epub 2019 May 9.


Mucor menace in an immunocompetent young male after dental manipulation.

Gupta N, Kumar R, Soneja M, Singh G, Khot W, Malla S, Xess I.

J Family Med Prim Care. 2019 Feb;8(2):757-759. doi: 10.4103/jfmpc.jfmpc_412_18.


Cutaneous metastasis in adenocarcinoma rectum.

Malla S, Razik A, Vyas S.

BMJ Case Rep. 2019 Apr 8;12(4). pii: e229652. doi: 10.1136/bcr-2019-229652. No abstract available.


Clinical Outcomes of Successful Revascularization of Chronic Total Coronary Occlusions with Bioresorbable Vascular Scaffolds: A Systematic Review.

Marchenko R, Nazir S, Malla S, Donato A.

Cureus. 2018 Nov 28;10(11):e3647. doi: 10.7759/cureus.3647. Review.


Lipoprotein lipase in mouse kidney: effects of nutritional status and high-fat diet.

Nyrén R, Makoveichuk E, Malla S, Kersten S, Nilsson SK, Ericsson M, Olivecrona G.

Am J Physiol Renal Physiol. 2019 Mar 1;316(3):F558-F571. doi: 10.1152/ajprenal.00474.2018. Epub 2019 Jan 30.


Astrocyte Viability and Functionality in Spatially Confined Microcavitation Zone.

Chen B, Tjahja J, Malla S, Liebman C, Cho M.

ACS Appl Mater Interfaces. 2019 Feb 6;11(5):4889-4899. doi: 10.1021/acsami.8b21410. Epub 2019 Jan 25.


Periportal pattern of primary hepatic lymphoma: a rare entity.

Vyas S, Malla S.

Abdom Radiol (NY). 2019 Mar;44(3):1201-1203. doi: 10.1007/s00261-018-1859-7. No abstract available.


Steering pluripotency and differentiation with N6-methyladenosine RNA modification.

Malla S, Melguizo-Sanchis D, Aguilo F.

Biochim Biophys Acta Gene Regul Mech. 2019 Mar;1862(3):394-402. doi: 10.1016/j.bbagrm.2018.10.013. Epub 2018 Nov 6. Review.


Recovery planning towards doubling wild tiger Panthera tigris numbers: Detailing 18 recovery sites from across the range.

Harihar A, Chanchani P, Borah J, Crouthers RJ, Darman Y, Gray TNE, Mohamad S, Rawson BM, Rayan MD, Roberts JL, Steinmetz R, Sunarto S, Widodo FA, Anwar M, Bhatta SR, Chakravarthi JPP, Chang Y, Congdon G, Dave C, Dey S, Durairaj B, Fomenko P, Guleria H, Gupta M, Gurung G, Ittira B, Jena J, Kostyria A, Kumar K, Kumar V, Lhendup P, Liu P, Malla S, Maurya K, Moktan V, Van NDN, Parakkasi K, Phoonjampa R, Phumanee W, Singh AK, Stengel C, Subba SA, Thapa K, Thomas TC, Wong C, Baltzer M, Ghose D, Worah S, Vattakaven J.

PLoS One. 2018 Nov 8;13(11):e0207114. doi: 10.1371/journal.pone.0207114. eCollection 2018.


Gfi1aa and Gfi1b set the pace for primitive erythroblast differentiation from hemangioblasts in the zebrafish embryo.

Moore C, Richens JL, Hough Y, Ucanok D, Malla S, Sang F, Chen Y, Elworthy S, Wilkinson RN, Gering M.

Blood Adv. 2018 Oct 23;2(20):2589-2606. doi: 10.1182/bloodadvances.2018020156.


Exosomes, Their Biogenesis and Role in Inter-Cellular Communication, Tumor Microenvironment and Cancer Immunotherapy.

Jella KK, Nasti TH, Li Z, Malla SR, Buchwald ZS, Khan MK.

Vaccines (Basel). 2018 Sep 26;6(4). pii: E69. doi: 10.3390/vaccines6040069. Review.


Escherichia coli modular coculture system for resveratrol glucosides production.

Thuan NH, Trung NT, Cuong NX, Van Cuong D, Van Quyen D, Malla S.

World J Microbiol Biotechnol. 2018 May 23;34(6):75. doi: 10.1007/s11274-018-2458-z.


Automated 3D-Printed Microfluidic Array for Rapid Nanomaterial-Enhanced Detection of Multiple Proteins.

Kadimisetty K, Malla S, Bhalerao KS, Mosa IM, Bhakta S, Lee NH, Rusling JF.

Anal Chem. 2018 Jun 19;90(12):7569-7577. doi: 10.1021/acs.analchem.8b01198. Epub 2018 May 31.


Pathways of Metabolite-Related Damage to a Synthetic p53 Gene Exon 7 Oligonucleotide Using Magnetic Enzyme Bioreactor Beads and LC-MS/MS Sequencing.

Malla S, Kadimisetty K, Jiang D, Choudhary D, Rusling JF.

Biochemistry. 2018 Jul 3;57(26):3883-3893. doi: 10.1021/acs.biochem.8b00271. Epub 2018 May 23.


First things first: Importance of eosinophil count in diagnosing occult parasites.

Gupta N, Ray A, Ghosh S, Malla S, Vyas S.

Drug Discov Ther. 2018;12(1):55-57. doi: 10.5582/ddt.2018.01005.


Comparative Study of Serum Lipid Profiles in Nepalese Cancer Patients Attending a Tertiary Care Hospital

Pandeya DR, Rajbhandari A, Nepal M, Abdalhabib EK, Bhatta M, Malla SS, Upadhyay L, Saiem Al Dahr MH.

Asian Pac J Cancer Prev. 2018 Feb 26;19(2):491-495.


Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M.

Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29.


Direct LC-MS/MS Detection of Guanine Oxidations in Exon 7 of the p53 Tumor Suppressor Gene.

Jiang D, Malla S, Fu YJ, Choudhary D, Rusling JF.

Anal Chem. 2017 Dec 5;89(23):12872-12879. doi: 10.1021/acs.analchem.7b03487. Epub 2017 Nov 22.


Mitochondrial Dysfunction, Through Impaired Autophagy, Leads to Endoplasmic Reticulum Stress, Deregulated Lipid Metabolism, and Pancreatitis in Animal Models.

Biczo G, Vegh ET, Shalbueva N, Mareninova OA, Elperin J, Lotshaw E, Gretler S, Lugea A, Malla SR, Dawson D, Ruchala P, Whitelegge J, French SW, Wen L, Husain SZ, Gorelick FS, Hegyi P, Rakonczay Z Jr, Gukovsky I, Gukovskaya AS.

Gastroenterology. 2018 Feb;154(3):689-703. doi: 10.1053/j.gastro.2017.10.012. Epub 2017 Oct 23.


Simultaneous determination of amlodipine and metoprolol in their combined dosage form using a synchronous fluorescence spectrofluorimetric method.

Mabrouk MM, Hammad SF, El-Malla SF, Elshenawy EA.

Luminescence. 2018 Mar;33(2):364-369. doi: 10.1002/bio.3422. Epub 2017 Oct 25.


Caesarean Section During Second Stage of Labor in a Tertiary Centre.

Gurung P, Malla S, Lama S, Malla A, Singh A.

J Nepal Health Res Counc. 2017 Sep 8;15(2):178-181.


MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.

Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen HJ, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE; MinION Analysis and Reference Consortium.

F1000Res. 2017 May 31;6:760. doi: 10.12688/f1000research.11354.1. eCollection 2017.


Automated 3-D Printed Arrays to Evaluate Genotoxic Chemistry: E-Cigarettes and Water Samples.

Kadimisetty K, Malla S, Rusling JF.

ACS Sens. 2017 May 26;2(5):670-678. doi: 10.1021/acssensors.7b00118. Epub 2017 May 2.


Signatures of Selection for Environmental Adaptation and Zebu × Taurine Hybrid Fitness in East African Shorthorn Zebu.

Bahbahani H, Tijjani A, Mukasa C, Wragg D, Almathen F, Nash O, Akpa GN, Mbole-Kariuki M, Malla S, Woolhouse M, Sonstegard T, Van Tassell C, Blythe M, Huson H, Hanotte O.

Front Genet. 2017 Jun 8;8:68. doi: 10.3389/fgene.2017.00068. eCollection 2017.


Tigers in the Terai: Strong evidence for meta-population dynamics contributing to tiger recovery and conservation in the Terai Arc Landscape.

Thapa K, Wikramanayake E, Malla S, Acharya KP, Lamichhane BR, Subedi N, Pokharel CP, Thapa GJ, Dhakal M, Bista A, Borah J, Gupta M, Maurya KK, Gurung GS, Jnawali SR, Pradhan NMB, Bhata SR, Koirala S, Ghose D, Vattakaven J.

PLoS One. 2017 Jun 7;12(6):e0177548. doi: 10.1371/journal.pone.0177548. eCollection 2017.


Development of Gene-Based SSR Markers in Winged  Bean (Psophocarpus tetragonolobus (L.) DC.) for  Diversity Assessment.

Wong QN, Tanzi AS, Ho WK, Malla S, Blythe M, Karunaratne A, Massawe F, Mayes S.

Genes (Basel). 2017 Mar 9;8(3). pii: E100. doi: 10.3390/genes8030100.


Microbial production of astilbin, a bioactive rhamnosylated flavanonol, from taxifolin.

Thuan NH, Malla S, Trung NT, Dhakal D, Pokhrel AR, Chu LL, Sohng JK.

World J Microbiol Biotechnol. 2017 Feb;33(2):36. doi: 10.1007/s11274-017-2208-7. Epub 2017 Jan 24.


Methyl-Cytosine-Driven Structural Changes Enhance Adduction Kinetics of an Exon 7 fragment of the p53 Gene.

Malla S, Kadimisetty K, Fu YJ, Choudhary D, Schenkman JB, Rusling JF.

Sci Rep. 2017 Jan 19;7:40890. doi: 10.1038/srep40890.


Impact of interventions on malaria in internally displaced persons along the China-Myanmar border: 2011-2014.

Zhou G, Lo E, Zhong D, Wang X, Wang Y, Malla S, Lee MC, Yang Z, Cui L, Yan G.

Malar J. 2016 Sep 15;15:471. doi: 10.1186/s12936-016-1512-2.


Microfluidic array for simultaneous detection of DNA oxidation and DNA-adduct damage.

Song B, Shen M, Jiang D, Malla S, Mosa IM, Choudhary D, Rusling JF.

Analyst. 2016 Oct 21;141(20):5722-5729. Epub 2016 Aug 12.


Real-time selective sequencing using nanopore technology.

Loose M, Malla S, Stout M.

Nat Methods. 2016 Sep;13(9):751-4. doi: 10.1038/nmeth.3930. Epub 2016 Jul 25.


Effect of oral administration of AZD8309, a CXCR2 antagonist, on the severity of experimental pancreatitis.

Malla SR, Kärrman Mårdh C, Günther A, Mahajan UM, Sendler M, D'Haese J, Weiss FU, Lerch MM, Hansen MB, Mayerle J.

Pancreatology. 2016 Sep-Oct;16(5):761-9. doi: 10.1016/j.pan.2016.07.005. Epub 2016 Jul 14.


Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression.

Daly P, van Munster JM, Kokolski M, Sang F, Blythe MJ, Malla S, Velasco de Castro Oliveira J, Goldman GH, Archer DB.

Fungal Genet Biol. 2017 May;102:4-21. doi: 10.1016/j.fgb.2016.04.005. Epub 2016 May 2.


The clinical significance of CA19-9 in ovarian mature cystic teratoma.

Fan JT, Yan HQ, Malla S, Fan YJ, Xu H, Li DH, Liu Y.

Clin Exp Obstet Gynecol. 2016;43(4):522-525.


Lysosome associated membrane proteins maintain pancreatic acinar cell homeostasis: LAMP-2 deficient mice develop pancreatitis.

Mareninova OA, Sendler M, Malla SR, Yakubov I, French SW, Tokhtaeva E, Vagin O, Oorschot V, Lüllmann-Rauch R, Blanz J, Dawson D, Klumperman J, Lerch MM, Mayerle J, Gukovsky I, Gukovskaya AS.

Cell Mol Gastroenterol Hepatol. 2015 Nov 1;1(6):678-694.


Electrochemistry-based approaches to low cost, high sensitivity, automated, multiplexed protein immunoassays for cancer diagnostics.

Dixit CK, Kadimisetty K, Otieno BA, Tang C, Malla S, Krause CE, Rusling JF.

Analyst. 2016 Jan 21;141(2):536-47. doi: 10.1039/c5an01829c. Epub 2015 Nov 3. Review.



Malla S, Kadimisetty K, Fu YJ, Choudhary D, Jansson I, Schenkman JB, Rusling JF.

Chem Sci. 2015 Oct 1;6(10):5554-5563. Epub 2015 Jun 24.


3D-printed supercapacitor-powered electrochemiluminescent protein immunoarray.

Kadimisetty K, Mosa IM, Malla S, Satterwhite-Warden JE, Kuhns TM, Faria RC, Lee NH, Rusling JF.

Biosens Bioelectron. 2016 Mar 15;77:188-93. doi: 10.1016/j.bios.2015.09.017. Epub 2015 Sep 11.


deFUME: Dynamic exploration of functional metagenomic sequencing data.

van der Helm E, Geertz-Hansen HM, Genee HJ, Malla S, Sommer MO.

BMC Res Notes. 2015 Jul 31;8:328. doi: 10.1186/s13104-015-1281-y.


Assembly of a novel biosynthetic pathway for production of the plant flavonoid fisetin in Escherichia coli.

Stahlhut SG, Siedler S, Malla S, Harrison SJ, Maury J, Neves AR, Forster J.

Metab Eng. 2015 Sep;31:84-93. doi: 10.1016/j.ymben.2015.07.002. Epub 2015 Jul 17.


Fungal cytochrome P450 monooxygenases of Fusarium oxysporum for the synthesis of ω-hydroxy fatty acids in engineered Saccharomyces cerevisiae.

Durairaj P, Malla S, Nadarajan SP, Lee PG, Jung E, Park HH, Kim BG, Yun H.

Microb Cell Fact. 2015 Apr 2;14:45. doi: 10.1186/s12934-015-0228-2.


Automated multiplexed ECL Immunoarrays for cancer biomarker proteins.

Kadimisetty K, Malla S, Sardesai NP, Joshi AA, Faria RC, Lee NH, Rusling JF.

Anal Chem. 2015 Apr 21;87(8):4472-8. doi: 10.1021/acs.analchem.5b00421. Epub 2015 Apr 9.


Evaluation of the reasons for nonacceptance of kidneys retrieved or offered in Rio Grande do Sul and Pais Vasco.

da Costa MG, Elorrieta P, Malla S, Aranzabal J.

Transplant Proc. 2014 Jul-Aug;46(6):1685-8. doi: 10.1016/j.transproceed.2014.05.009.


Characterisation of the horse transcriptome from immunologically active tissues.

Moreton J, Malla S, Aboobaker AA, Tarlinton RE, Emes RD.

PeerJ. 2014 May 6;2:e382. doi: 10.7717/peerj.382. eCollection 2014.

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