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Items: 43


Is it time for a universal genetic forensic database?

Hazel JW, Clayton EW, Malin BA, Slobogin C.

Science. 2018 Nov 23;362(6417):898-900. doi: 10.1126/science.aav5475. No abstract available.


The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation.

Yin Z, Harrell M, Warner JL, Chen Q, Fabbri D, Malin BA.

J Am Med Inform Assoc. 2018 Nov 1;25(11):1444-1451. doi: 10.1093/jamia/ocy118.


A systematic literature review of individuals' perspectives on privacy and genetic information in the United States.

Clayton EW, Halverson CM, Sathe NA, Malin BA.

PLoS One. 2018 Oct 31;13(10):e0204417. doi: 10.1371/journal.pone.0204417. eCollection 2018.


Registered access: authorizing data access.

Dyke SOM, Linden M, Lappalainen I, De Argila JR, Carey K, Lloyd D, Spalding JD, Cabili MN, Kerry G, Foreman J, Cutts T, Shabani M, Rodriguez LL, Haeussler M, Walsh B, Jiang X, Wang S, Perrett D, Boughtwood T, Matern A, Brookes AJ, Cupak M, Fiume M, Pandya R, Tulchinsky I, Scollen S, Törnroos J, Das S, Evans AC, Malin BA, Beck S, Brenner SE, Nyrönen T, Blomberg N, Firth HV, Hurles M, Philippakis AA, Rätsch G, Brudno M, Boycott KM, Rehm HL, Baudis M, Sherry ST, Kato K, Knoppers BM, Baker D, Flicek P.

Eur J Hum Genet. 2018 Dec;26(12):1721-1731. doi: 10.1038/s41431-018-0219-y. Epub 2018 Aug 2.


Automated Real-Time Collection of Pathogen-Specific Diagnostic Data: Syndromic Infectious Disease Epidemiology.

Meyers L, Ginocchio CC, Faucett AN, Nolte FS, Gesteland PH, Leber A, Janowiak D, Donovan V, Dien Bard J, Spitzer S, Stellrecht KA, Salimnia H, Selvarangan R, Juretschko S, Daly JA, Wallentine JC, Lindsey K, Moore F, Reed SL, Aguero-Rosenfeld M, Fey PD, Storch GA, Melnick SJ, Robinson CC, Meredith JF, Cook CV, Nelson RK, Jones JD, Scarpino SV, Althouse BM, Ririe KM, Malin BA, Poritz MA.

JMIR Public Health Surveill. 2018 Jul 6;4(3):e59. doi: 10.2196/publichealth.9876.


Predicting Neonatal Encephalopathy From Maternal Data in Electronic Medical Records.

Li T, Gao C, Yan C, Osmundson S, Malin BA, Chen Y.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:359-368. eCollection 2018.


Talking About My Care: Detecting Mentions of Hormonal Therapy Adherence Behavior in an Online Breast Cancer Community.

Yin Z, Xie W, Malin BA.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1868-1877. eCollection 2017.


Evaluating the Effectiveness of Auditing Rules for Electronic Health Record Systems.

Hedda M, Malin BA, Yan C, Fabbri D.

AMIA Annu Symp Proc. 2018 Apr 16;2017:866-875. eCollection 2017.


Development of an automated phenotyping algorithm for hepatorenal syndrome.

Koola JD, Davis SE, Al-Nimri O, Parr SK, Fabbri D, Malin BA, Ho SB, Matheny ME.

J Biomed Inform. 2018 Apr;80:87-95. doi: 10.1016/j.jbi.2018.03.001. Epub 2018 Mar 9.


Interaction patterns of trauma providers are associated with length of stay.

Chen Y, Patel MB, McNaughton CD, Malin BA.

J Am Med Inform Assoc. 2018 Jul 1;25(7):790-799. doi: 10.1093/jamia/ocy009.


Predicting Length of Stay for Obstetric Patients via Electronic Medical Records.

Gao C, Kho AN, Ivory C, Osmundson S, Malin BA, Chen Y.

Stud Health Technol Inform. 2017;245:1019-1023.


Learning bundled care opportunities from electronic medical records.

Chen Y, Kho AN, Liebovitz D, Ivory C, Osmundson S, Bian J, Malin BA.

J Biomed Inform. 2018 Jan;77:1-10. doi: 10.1016/j.jbi.2017.11.014. Epub 2017 Nov 22.


It's all in the timing: calibrating temporal penalties for biomedical data sharing.

Xia W, Wan Z, Yin Z, Gaupp J, Liu Y, Clayton EW, Kantarcioglu M, Vorobeychik Y, Malin BA.

J Am Med Inform Assoc. 2018 Jan 1;25(1):25-31. doi: 10.1093/jamia/ocx101.


Predicting Negative Events: Using Post-discharge Data to Detect High-Risk Patients.

Sulieman L, Fabbri D, Wang F, Hu J, Malin BA.

AMIA Annu Symp Proc. 2017 Feb 10;2016:1169-1178. eCollection 2016.


Identifying collaborative care teams through electronic medical record utilization patterns.

Chen Y, Lorenzi NM, Sandberg WS, Wolgast K, Malin BA.

J Am Med Inform Assoc. 2017 Apr 1;24(e1):e111-e120. doi: 10.1093/jamia/ocw124.


Is the Juice Worth the Squeeze? Costs and Benefits of Multiple Human Annotators for Clinical Text De-identification.

Carrell DS, Cronkite DJ, Malin BA, Aberdeen JS, Hirschman L.

Methods Inf Med. 2016 Aug 5;55(4):356-64. doi: 10.3414/ME15-01-0122. Epub 2016 Jul 13.


Optimizing annotation resources for natural language de-identification via a game theoretic framework.

Li M, Carrell D, Aberdeen J, Hirschman L, Kirby J, Li B, Vorobeychik Y, Malin BA.

J Biomed Inform. 2016 Jun;61:97-109. doi: 10.1016/j.jbi.2016.03.019. Epub 2016 Mar 25.


Preserving temporal relations in clinical data while maintaining privacy.

Hripcsak G, Mirhaji P, Low AF, Malin BA.

J Am Med Inform Assoc. 2016 Nov;23(6):1040-1045. doi: 10.1093/jamia/ocw001. Epub 2016 Mar 24.


Privacy in the Genomic Era.

Naveed M, Ayday E, Clayton EW, Fellay J, Gunter CA, Hubaux JP, Malin BA, Wang X.

ACM Comput Surv. 2015 Sep;48(1). pii: 6.


A multi-institution evaluation of clinical profile anonymization.

Heatherly R, Rasmussen LV, Peissig PL, Pacheco JA, Harris P, Denny JC, Malin BA.

J Am Med Inform Assoc. 2016 Apr;23(e1):e131-7. doi: 10.1093/jamia/ocv154. Epub 2015 Nov 13.


Design and implementation of a privacy preserving electronic health record linkage tool in Chicago.

Kho AN, Cashy JP, Jackson KL, Pah AR, Goel S, Boehnke J, Humphries JE, Kominers SD, Hota BN, Sims SA, Malin BA, French DD, Walunas TL, Meltzer DO, Kaleba EO, Jones RC, Galanter WL.

J Am Med Inform Assoc. 2015 Sep;22(5):1072-80. doi: 10.1093/jamia/ocv038. Epub 2015 Jun 23.


R-U policy frontiers for health data de-identification.

Xia W, Heatherly R, Ding X, Li J, Malin BA.

J Am Med Inform Assoc. 2015 Sep;22(5):1029-41. doi: 10.1093/jamia/ocv004. Epub 2015 Apr 24.


A game theoretic framework for analyzing re-identification risk.

Wan Z, Vorobeychik Y, Xia W, Clayton EW, Kantarcioglu M, Ganta R, Heatherly R, Malin BA.

PLoS One. 2015 Mar 25;10(3):e0120592. doi: 10.1371/journal.pone.0120592. eCollection 2015.


Ensuring patient privacy in data sharing for postapproval research.

Sarpatwari A, Kesselheim AS, Malin BA, Gagne JJ, Schneeweiss S.

N Engl J Med. 2014 Oct 23;371(17):1644-9. doi: 10.1056/NEJMsb1405487. No abstract available.


SecureMA: protecting participant privacy in genetic association meta-analysis.

Xie W, Kantarcioglu M, Bush WS, Crawford D, Denny JC, Heatherly R, Malin BA.

Bioinformatics. 2014 Dec 1;30(23):3334-41. doi: 10.1093/bioinformatics/btu561. Epub 2014 Aug 21.


De-identification of clinical narratives through writing complexity measures.

Li M, Carrell D, Aberdeen J, Hirschman L, Malin BA.

Int J Med Inform. 2014 Oct;83(10):750-67. doi: 10.1016/j.ijmedinf.2014.07.002. Epub 2014 Jul 24.


Limestone: high-throughput candidate phenotype generation via tensor factorization.

Ho JC, Ghosh J, Steinhubl SR, Stewart WF, Denny JC, Malin BA, Sun J.

J Biomed Inform. 2014 Dec;52:199-211. doi: 10.1016/j.jbi.2014.07.001. Epub 2014 Jul 16.


Size matters: how population size influences genotype-phenotype association studies in anonymized data.

Heatherly R, Denny JC, Haines JL, Roden DM, Malin BA.

J Biomed Inform. 2014 Dec;52:243-50. doi: 10.1016/j.jbi.2014.07.005. Epub 2014 Jul 16.


Predicting changes in hypertension control using electronic health records from a chronic disease management program.

Sun J, McNaughton CD, Zhang P, Perer A, Gkoulalas-Divanis A, Denny JC, Kirby J, Lasko T, Saip A, Malin BA.

J Am Med Inform Assoc. 2014 Mar-Apr;21(2):337-44. doi: 10.1136/amiajnl-2013-002033. Epub 2013 Sep 17.


Ethical, legal, and social implications of incorporating genomic information into electronic health records.

Hazin R, Brothers KB, Malin BA, Koenig BA, Sanderson SC, Rothstein MA, Williams MS, Clayton EW, Kullo IJ.

Genet Med. 2013 Oct;15(10):810-6. doi: 10.1038/gim.2013.117. Epub 2013 Sep 12. Review.


State of the art in clinical informatics: evidence and examples.

McCoy AB, Wright A, Eysenbach G, Malin BA, Patterson ES, Xu H, Sittig DF.

Yearb Med Inform. 2013;8:13-9. Review.


Ethical and practical challenges to studying patients who opt out of large-scale biorepository research.

Rosenbloom ST, Madison JL, Brothers KB, Bowton EA, Clayton EW, Malin BA, Roden DM, Pulley J.

J Am Med Inform Assoc. 2013 Dec;20(e2):e221-5. doi: 10.1136/amiajnl-2013-001937. Epub 2013 Jul 25.


Correction: Enabling Genomic-Phenomic Association Discovery without Sacrificing Anonymity.

Heatherly RD, Loukides G, Denny JC, Haines JL, Roden DM, Malin BA.

PLoS One. 2013 Jun 18;8(6). doi: 10.1371/annotation/db45627a-50ec-4c52-8b5f-95dec75b1c80. Print 2013.


Data re-identification: societal safeguards.

Altman RB, Clayton EW, Kohane IS, Malin BA, Roden DM.

Science. 2013 Mar 1;339(6123):1032-3. doi: 10.1126/science.339.6123.1032-c. No abstract available.


Enabling genomic-phenomic association discovery without sacrificing anonymity.

Heatherly RD, Loukides G, Denny JC, Haines JL, Roden DM, Malin BA.

PLoS One. 2013;8(2):e53875. doi: 10.1371/journal.pone.0053875. Epub 2013 Feb 6.


Biomedical data privacy: problems, perspectives, and recent advances.

Malin BA, Emam KE, O'Keefe CM.

J Am Med Inform Assoc. 2013 Jan 1;20(1):2-6. doi: 10.1136/amiajnl-2012-001509. Epub 2012 Dec 6. No abstract available.


A modeling environment for patient portals.

Duncavage S, Mathe J, Werner J, Malin BA, Ledeczi A, Sztipanovits J.

AMIA Annu Symp Proc. 2007 Oct 11:201-5.


A secure protocol to distribute unlinkable health data.

Malin BA, Sweeney L.

AMIA Annu Symp Proc. 2005:485-9.


Protecting genomic sequence anonymity with generalization lattices.

Malin BA.

Methods Inf Med. 2005;44(5):687-92.


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