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Items: 1 to 50 of 64

1.

Current evidence allows multiple models for the peopling of the Americas.

Potter BA, Baichtal JF, Beaudoin AB, Fehren-Schmitz L, Haynes CV, Holliday VT, Holmes CE, Ives JW, Kelly RL, Llamas B, Malhi RS, Miller DS, Reich D, Reuther JD, Schiffels S, Surovell TA.

Sci Adv. 2018 Aug 8;4(8):eaat5473. doi: 10.1126/sciadv.aat5473. eCollection 2018 Aug. Review.

2.

A framework for enhancing ethical genomic research with Indigenous communities.

Claw KG, Anderson MZ, Begay RL, Tsosie KS, Fox K, Garrison NA; Summer internship for INdigenous peoples in Genomics (SING) Consortium.

Nat Commun. 2018 Jul 27;9(1):2957. doi: 10.1038/s41467-018-05188-3. Review.

3.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
4.

trnL outperforms rbcL as a DNA metabarcoding marker when compared with the observed plant component of the diet of wild white-faced capuchins (Cebus capucinus, Primates).

Mallott EK, Garber PA, Malhi RS.

PLoS One. 2018 Jun 26;13(6):e0199556. doi: 10.1371/journal.pone.0199556. eCollection 2018.

5.

Ancient human parallel lineages within North America contributed to a coastal expansion.

Scheib CL, Li H, Desai T, Link V, Kendall C, Dewar G, Griffith PW, Mörseburg A, Johnson JR, Potter A, Kerr SL, Endicott P, Lindo J, Haber M, Xue Y, Tyler-Smith C, Sandhu MS, Lorenz JG, Randall TD, Faltyskova Z, Pagani L, Danecek P, O'Connell TC, Martz P, Boraas AS, Byrd BF, Leventhal A, Cambra R, Williamson R, Lesage L, Holguin B, Ygnacio-De Soto E, Rosas J, Metspalu M, Stock JT, Manica A, Scally A, Wegmann D, Malhi RS, Kivisild T.

Science. 2018 Jun 1;360(6392):1024-1027. doi: 10.1126/science.aar6851.

PMID:
29853687
6.

Chaco Canyon Dig Unearths Ethical Concerns.

Claw KG, Lippert D, Bardill J, Cordova A, Fox K, Yracheta JM, Bader AC, Bolnick DA, Malhi RS, TallBear K, Garrison NA.

Hum Biol. 2017 Jul;89(3):177-180.

7.

Patterns of Genetic Coding Variation in a Native American Population before and after European Contact.

Lindo J, Rogers M, Mallott EK, Petzelt B, Mitchell J, Archer D, Cybulski JS, Malhi RS, DeGiorgio M.

Am J Hum Genet. 2018 May 3;102(5):806-815. doi: 10.1016/j.ajhg.2018.03.008. Epub 2018 Apr 26.

PMID:
29706345
8.

Advancing the ethics of paleogenomics.

Bardill J, Bader AC, Garrison NA, Bolnick DA, Raff JA, Walker A, Malhi RS; Summer internship for INdigenous peoples in Genomics (SING) Consortium.

Science. 2018 Apr 27;360(6387):384-385. doi: 10.1126/science.aaq1131. Epub 2018 Apr 26. No abstract available.

PMID:
29700256
9.

Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis).

Brandt JR, van Coeverden de Groot PJ, Witt KE, Engelbrektsson PK, Helgen KM, Malhi RS, Ryder OA, Roca AL.

J Hered. 2018 Jun 27;109(5):553-565. doi: 10.1093/jhered/esy019.

PMID:
29684146
10.

Race and diversity in U.S. Biological Anthropology: A decade of AAPA initiatives.

Antón SC, Malhi RS, Fuentes A.

Am J Phys Anthropol. 2018 Jan;165 Suppl 65:158-180. doi: 10.1002/ajpa.23382.

PMID:
29380881
11.

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans.

Moreno-Mayar JV, Potter BA, Vinner L, Steinrücken M, Rasmussen S, Terhorst J, Kamm JA, Albrechtsen A, Malaspinas AS, Sikora M, Reuther JD, Irish JD, Malhi RS, Orlando L, Song YS, Nielsen R, Meltzer DJ, Willerslev E.

Nature. 2018 Jan 11;553(7687):203-207. doi: 10.1038/nature25173. Epub 2018 Jan 3.

PMID:
29323294
12.

Influence of fruit and invertebrate consumption on the gut microbiota of wild white-faced capuchins (Cebus capucinus).

Mallott EK, Amato KR, Garber PA, Malhi RS.

Am J Phys Anthropol. 2018 Mar;165(3):576-588. doi: 10.1002/ajpa.23395. Epub 2018 Jan 4.

PMID:
29313897
13.

Complete Mitochondrial Genome Sequencing of a Burial from a Romano-Christian Cemetery in the Dakhleh Oasis, Egypt: Preliminary Indications.

Molto JE, Loreille O, Mallott EK, Malhi RS, Fast S, Daniels-Higginbotham J, Marshall C, Parr R.

Genes (Basel). 2017 Oct 6;8(10). pii: E262. doi: 10.3390/genes8100262.

14.

Tracing the phylogeographic history of Southeast Asian long-tailed macaques through mitogenomes of museum specimens.

Yao L, Li H, Martin RD, Moreau CS, Malhi RS.

Mol Phylogenet Evol. 2017 Nov;116:227-238. doi: 10.1016/j.ympev.2017.08.006. Epub 2017 Aug 31.

PMID:
28863929
15.

2015 Gabriel W. Lasker Award.

Malhi RS.

Hum Biol. 2016 Oct;88(4):301. No abstract available.

PMID:
28826324
16.

Genetic Structure of First Nation Communities in the Pacific Northwest.

Hughes CE, Rogers MP, Owings AC, Petzelt B, Mitchell J, Harry H, Williams T, Goldberg D, Labuda D, Smith DG, Cybulski JS, Malhi RS.

Hum Biol. 2016 Oct;88(4):251-263.

PMID:
28826319
17.

Engaging rural communities in genetic research: challenges and opportunities.

Dean C, Fogleman AJ, Zahnd WE, Lipka AE, Malhi RS, Delfino KR, Jenkins WD.

J Community Genet. 2017 Jul;8(3):209-219. doi: 10.1007/s12687-017-0304-x. Epub 2017 May 5.

18.

Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity.

Lindo J, Achilli A, Perego UA, Archer D, Valdiosera C, Petzelt B, Mitchell J, Worl R, Dixon EJ, Fifield TE, Rasmussen M, Willerslev E, Cybulski JS, Kemp BM, DeGiorgio M, Malhi RS.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):4093-4098. doi: 10.1073/pnas.1620410114. Epub 2017 Apr 4.

19.

A time transect of exomes from a Native American population before and after European contact.

Lindo J, Huerta-Sánchez E, Nakagome S, Rasmussen M, Petzelt B, Mitchell J, Cybulski JS, Willerslev E, DeGiorgio M, Malhi RS.

Nat Commun. 2016 Nov 15;7:13175. doi: 10.1038/ncomms13175.

20.

ENGAGING NATIVE AMERICANS IN GENOMICS RESEARCH.

Malhi RS, Bader A.

Am Anthropol. 2015 Dec;117(4):743-744. Epub 2015 Dec 4. No abstract available.

21.
22.
23.

Variance in disease risk: rural populations and genetic diversity.

Jenkins WD, Lipka AE, Fogleman AJ, Delfino KR, Malhi RS, Hendricks B.

Genome. 2016 Jul;59(7):519-25. doi: 10.1139/gen-2016-0077. Epub 2016 May 24. Review.

PMID:
27334395
24.

A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d.

Sans M, Figueiro G, Hughes CE, Lindo J, Hidalgo PC, Malhi RS.

PLoS One. 2015 Oct 28;10(10):e0141808. doi: 10.1371/journal.pone.0141808. eCollection 2015.

25.

Low Mitochondrial DNA Diversity in an Ancient Population from China: Insight into Social Organization at the Fujia Site.

Dong Y, Li C, Luan F, Li Z, Li H, Cui Y, Zhou H, Malhi RS.

Hum Biol. 2015 Jan;87(1):71-84.

PMID:
26416323
26.

Isotopic and genetic analyses of a mass grave in central California: Implications for precontact hunter-gatherer warfare.

Eerkens JW, Carlson T, Malhi RS, Blake J, Bartelink EJ, Barfod GH, Estes A, Garibay R, Glessner J, Greenwald AM, Lentz K, Li H, Marshall CK.

Am J Phys Anthropol. 2016 Jan;159(1):116-25. doi: 10.1002/ajpa.22843. Epub 2015 Sep 2.

27.

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, Cornejo OE, Moreno-Mayar JV, Korneliussen TS, Pierre T, Rasmussen M, Campos PF, de Barros Damgaard P, Allentoft ME, Lindo J, Metspalu E, Rodríguez-Varela R, Mansilla J, Henrickson C, Seguin-Orlando A, Malmström H, Stafford T Jr, Shringarpure SS, Moreno-Estrada A, Karmin M, Tambets K, Bergström A, Xue Y, Warmuth V, Friend AD, Singarayer J, Valdes P, Balloux F, Leboreiro I, Vera JL, Rangel-Villalobos H, Pettener D, Luiselli D, Davis LG, Heyer E, Zollikofer CPE, Ponce de León MS, Smith CI, Grimes V, Pike KA, Deal M, Fuller BT, Arriaza B, Standen V, Luz MF, Ricaut F, Guidon N, Osipova L, Voevoda MI, Posukh OL, Balanovsky O, Lavryashina M, Bogunov Y, Khusnutdinova E, Gubina M, Balanovska E, Fedorova S, Litvinov S, Malyarchuk B, Derenko M, Mosher MJ, Archer D, Cybulski J, Petzelt B, Mitchell J, Worl R, Norman PJ, Parham P, Kemp BM, Kivisild T, Tyler-Smith C, Sandhu MS, Crawford M, Villems R, Smith DG, Waters MR, Goebel T, Johnson JR, Malhi RS, Jakobsson M, Meltzer DJ, Manica A, Durbin R, Bustamante CD, Song YS, Nielsen R, Willerslev E.

Science. 2015 Aug 21;349(6250):aab3884. doi: 10.1126/science.aab3884. Epub 2015 Jul 21.

28.

The ancestry and affiliations of Kennewick Man.

Rasmussen M, Sikora M, Albrechtsen A, Korneliussen TS, Moreno-Mayar JV, Poznik GD, Zollikofer CPE, de León MP, Allentoft ME, Moltke I, Jónsson H, Valdiosera C, Malhi RS, Orlando L, Bustamante CD, Stafford TW Jr, Meltzer DJ, Nielsen R, Willerslev E.

Nature. 2015 Jul 23;523(7561):455-458. doi: 10.1038/nature14625.

29.

Anthropology. Response to Comment on "Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans".

Kemp BM, Lindo J, Bolnick DA, Malhi RS, Chatters JC.

Science. 2015 Feb 20;347(6224):835. doi: 10.1126/science.1261188.

30.

DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories.

Witt KE, Judd K, Kitchen A, Grier C, Kohler TA, Ortman SG, Kemp BM, Malhi RS.

J Hum Evol. 2015 Feb;79:105-18. doi: 10.1016/j.jhevol.2014.10.012. Epub 2014 Dec 18.

PMID:
25532803
31.

Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.

Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, Yoder AD, Malhi RS, Perry GH.

J Hum Evol. 2015 Feb;79:45-54. doi: 10.1016/j.jhevol.2014.06.016. Epub 2014 Dec 16.

PMID:
25523037
32.

Providing a venue for influential research in anthropological genomics. Introduction.

Malhi RS, Kemp BM.

Hum Biol. 2014 Winter;86(1):5-6. No abstract available.

PMID:
25401982
33.

Patterns of genetic variation and the role of selection in HTR1A and HTR1B in macaques (Macaca).

Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Melnick DJ, Malhi RS.

BMC Genet. 2014 Nov 7;15:116. doi: 10.1186/s12863-014-0116-5.

34.

High-throughput sequencing of fecal DNA to identify insects consumed by wild Weddell's saddleback tamarins (Saguinus weddelli, Cebidae, Primates) in Bolivia.

Mallott EK, Malhi RS, Garber PA.

Am J Phys Anthropol. 2015 Mar;156(3):474-81. doi: 10.1002/ajpa.22654. Epub 2014 Nov 4.

PMID:
25369770
35.

Patterns of admixture and population structure in native populations of Northwest North America.

Verdu P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski JS, Rosenberg NA, Malhi RS.

PLoS Genet. 2014 Aug 14;10(8):e1004530. doi: 10.1371/journal.pgen.1004530. eCollection 2014 Aug.

36.

Early Americans: misstated results.

Kennett DJ, Asmerom Y, Kemp BM, Polyak V, Bolnick DA, Malhi RS, Culleton BJ.

Science. 2014 Jul 25;345(6195):390. doi: 10.1126/science.345.6195.390-a. Epub 2014 Jul 24. No abstract available.

PMID:
25061196
37.

Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans.

Chatters JC, Kennett DJ, Asmerom Y, Kemp BM, Polyak V, Blank AN, Beddows PA, Reinhardt E, Arroyo-Cabrales J, Bolnick DA, Malhi RS, Culleton BJ, Erreguerena PL, Rissolo D, Morell-Hart S, Stafford TW Jr.

Science. 2014 May 16;344(6185):750-4. doi: 10.1126/science.1252619.

38.

The genome of a Late Pleistocene human from a Clovis burial site in western Montana.

Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW Jr, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS 5th, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M, Nielsen R, Willerslev E.

Nature. 2014 Feb 13;506(7487):225-9. doi: 10.1038/nature13025.

39.

The evolutionary history of SLC6A4 and the role of plasticity in Macaca.

Shattuck MR, Satkoski-Trask J, Deinard A, Tito RY, Smith DG, Malhi RS.

Am J Phys Anthropol. 2014 Apr;153(4):605-16. doi: 10.1002/ajpa.22460. Epub 2013 Dec 24.

40.

Reconciling migration models to the Americas with the variation of North American native mitogenomes.

Achilli A, Perego UA, Lancioni H, Olivieri A, Gandini F, Hooshiar Kashani B, Battaglia V, Grugni V, Angerhofer N, Rogers MP, Herrera RJ, Woodward SR, Labuda D, Smith DG, Cybulski JS, Semino O, Malhi RS, Torroni A.

Proc Natl Acad Sci U S A. 2013 Aug 27;110(35):14308-13. doi: 10.1073/pnas.1306290110. Epub 2013 Aug 12.

41.

Ancient DNA analysis of mid-holocene individuals from the Northwest Coast of North America reveals different evolutionary paths for mitogenomes.

Cui Y, Lindo J, Hughes CE, Johnson JW, Hernandez AG, Kemp BM, Ma J, Cunningham R, Petzelt B, Mitchell J, Archer D, Cybulski JS, Malhi RS.

PLoS One. 2013 Jul 3;8(7):e66948. doi: 10.1371/journal.pone.0066948. Print 2013.

42.

4040 SNPs for genomic analysis in the rhesus macaque (Macaca mulatta).

Trask JS, Garnica WT, Kanthaswamy S, Malhi RS, Smith DG.

Genomics. 2011 Nov;98(5):352-8. doi: 10.1016/j.ygeno.2011.08.004. Epub 2011 Aug 31.

43.

High-throughput single-nucleotide polymorphism discovery and the search for candidate genes for long-term SIVmac nonprogression in Chinese rhesus macaques (Macaca mulatta).

Trask JS, Garnica WT, Malhi RS, Kanthaswamy S, Smith DG.

J Med Primatol. 2011 Aug;40(4):224-32. doi: 10.1111/j.1600-0684.2011.00486.x.

44.

Genotyping single nucleotide polymorphisms (SNPs) across species in Old World Monkeys.

Malhi RS, Trask JS, Shattuck M, Johnson J, Chakraborty D, Kanthaswamy S, Ramakrishnan U, Smith DG.

Am J Primatol. 2011 Oct;73(10):1031-40. doi: 10.1002/ajp.20969. Epub 2011 May 31.

PMID:
21630301
45.

The effect of SNP discovery method and sample size on estimation of population genetic data for Chinese and Indian rhesus macaques (Macaca mulatta).

Trask JA, Malhi RS, Kanthaswamy S, Johnson J, Garnica WT, Malladi VS, Smith DG.

Primates. 2011 Apr;52(2):129-38. doi: 10.1007/s10329-010-0232-4. Epub 2011 Jan 5.

PMID:
21207104
46.

Evaluating the Farming/Language Dispersal Hypothesis with genetic variation exhibited by populations in the Southwest and Mesoamerica.

Kemp BM, González-Oliver A, Malhi RS, Monroe C, Schroeder KB, McDonough J, Rhett G, Resendéz A, Peñaloza-Espinosa RI, Buentello-Malo L, Gorodesky C, Smith DG.

Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6759-64. doi: 10.1073/pnas.0905753107. Epub 2010 Mar 29.

47.

Brief communication: mitochondrial haplotype C4c confirmed as a founding genome in the Americas.

Malhi RS, Cybulski JS, Tito RY, Johnson J, Harry H, Dan C.

Am J Phys Anthropol. 2010 Mar;141(3):494-7. doi: 10.1002/ajpa.21238.

PMID:
20027611
48.

Multiple Asian pig origins revealed through genomic analyses.

Luetkemeier ES, Sodhi M, Schook LB, Malhi RS.

Mol Phylogenet Evol. 2010 Mar;54(3):680-6. doi: 10.1016/j.ympev.2009.11.004. Epub 2009 Nov 10.

PMID:
19900568
49.

Uses and limitations of genetic data relating to Athapaskan migrations: a reply to Seymour.

Malhi RS, Schroeder KB, Kemp BM.

Am J Phys Anthropol. 2009 Oct;140(2):203-4. doi: 10.1002/ajpa.21130. No abstract available.

PMID:
19591212
50.

Haplotypic background of a private allele at high frequency in the Americas.

Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA.

Mol Biol Evol. 2009 May;26(5):995-1016. doi: 10.1093/molbev/msp024. Epub 2009 Feb 12.

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